PDB Short entry for 1MQZ HEADER ANTIBIOTIC 17-SEP-02 1MQZ TITLE NMR SOLUTION STRUCTURE OF TYPE-B LANTIBIOTICS MERSACIDIN BOUND TO TITLE 2 LIPID II IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: LANTIBIOTIC MERSACIDIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TYPE-B LANTIBIOTICS MERSACIDIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. HIL-Y85/54728; SOURCE 3 ORGANISM_TAXID: 69002; SOURCE 4 STRAIN: HIL Y-85, 54728 KEYWDS ANTIBIOTIC, ANTIMICROBIAL, LANTIBIOTICS, BACTERIOCIN, PEPTIDOGLYCAN, KEYWDS 2 METHICILLIN RESISTANCE, THIOESTER EXPDTA SOLUTION NMR NUMMDL 17 AUTHOR S.-T.HSU,E.BREUKINK,G.BIERBAUM,H.-G.SAHL,B.DE KRUIJFF,R.KAPTEIN, AUTHOR 2 N.A.VAN NULAND,A.M.BONVIN REVDAT 6 08-AUG-18 1MQZ 1 REMARK REVDAT 5 27-JUL-11 1MQZ 1 REVDAT REVDAT 4 13-JUL-11 1MQZ 1 VERSN REVDAT 3 24-FEB-09 1MQZ 1 VERSN REVDAT 2 11-JAN-05 1MQZ 1 JRNL REVDAT 1 11-MAR-03 1MQZ 0 JRNL AUTH S.-T.HSU,E.BREUKINK,G.BIERBAUM,H.-G.SAHL,B.DE KRUIJFF, JRNL AUTH 2 R.KAPTEIN,N.A.VAN NULAND,A.M.BONVIN JRNL TITL NMR STUDY OF MERSACIDIN AND LIPID II INTERACTION IN JRNL TITL 2 DODECYLPHOSPHOCHOLINE MICELLES. CONFORMATIONAL CHANGES ARE A JRNL TITL 3 KEY TO ANTIMICROBIAL ACTIVITY JRNL REF J.BIOL.CHEM. V. 278 13110 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12562773 JRNL DOI 10.1074/JBC.M211144200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.1 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: OPLS WATER REFINEMENT REMARK 4 REMARK 4 1MQZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017120. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM MERSACIDIN IN 10 MM SODIUM REMARK 210 PHOSPHATE BUFFER AT PH 6.0, 2MM REMARK 210 UNLABELED LIPID II, 100MM REMARK 210 PERDEUTERATED DPC, 37% METHANOL/ REMARK 210 63% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, NMRPIPE, CNS 1.1, ARIA REMARK 210 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING TORSION, REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 17 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 MERSACIDIN IS A GLOBULAR TYPE B LANTIBIOTIC. THE REMARK 400 LANTIBIOTICS ARE CHARACTERIZED BY THIOETHER AMINO ACIDS LANTHIONINE REMARK 400 AND/OR METHYLLANTHIONINE. REMARK 400 HERE, MERSACIDIN IS REPRESENTED BY THE SEQUENCE (SEQRES) REMARK 400 REMARK 400 THE MERSACIDIN IS OLIGOPEPTIDE, A MEMBER OF ANTIBIOTIC CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: MERSACIDIN REMARK 400 CHAIN: A REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: MERSACIDIN IS A TETRACYCLIC PEPTIDE. POST REMARK 400 TRANSLATIONAL MATURATION OF LANTIBIOTICS INVOLVES REMARK 400 THE ENZYMIC CONVERSION OF THR, AND SER INTO REMARK 400 DEHYDRATED AA AND THE FORMATION OF THIOETHER BONDS REMARK 400 WITH CYSTEINE. THE CARBOXY-TERMINAL BETA- REMARK 400 METHYLLANTHIONINE UNDERGOES DECARBOXYLATION. REMARK 400 THIOETHER BONDS WITH CYSTEINE RESULT IN FOUR RINGS. REMARK 400 THIS IS FOLLOWED BY MEMBRANE TRANSLOCATION AND REMARK 400 CLEAVAGE OF THE MODIFIED PRECURSOR. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AJ1 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE LANTIBIOTIC ACTAGARDINE REMARK 900 RELATED ID: 1MQX RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN IN MEOH/H2O REMARK 900 MIXTURE REMARK 900 RELATED ID: 1MQY RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN IN DPC MICELLES REMARK 900 RELATED ID: 1QOW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TUPE B LANTIBIOTIC MERSACIDIN REMARK 900 RELATED ID: 1W9N RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE LANTIBIOTIC EPILANCIN 15X REMARK 900 RELATED ID: 1WCO RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF NISIN AND LIPID II COMPLEX REMARK 900 RELATED ID: 2DDE RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE LANTIBIOTIC CINNAMYCIN COMPLEXED WITH REMARK 900 LYSOPHOSPHATIDYLETHANOLAMINE REMARK 900 RELATED ID: 2KTN RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF LCH-ALPHA PEPTIDE FROM TWO-COMPONENT REMARK 900 LANTIBIOTIC SYSTEM LICHENICIDIN VK21 A1 REMARK 900 RELATED ID: 2KTO RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF LCH-BETA PEPTIDE FROM TWO-COMPONENT REMARK 900 LANTIBIOTIC LICHENICIDIN VK21 A2 REMARK 900 RELATED ID: 5581 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT DATA OF MERSACIDIN IN MEOH/H2O REMARK 900 RELATED ID: 5582 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT DATA OF MERSACIDIN DPCBOUND REMARK 900 RELATED ID: 5580 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT DATA OF MERSACIDIN IN LIPID II DBREF 1MQZ A 1 20 UNP P43683 MRSA_BACSP 49 68 SEQRES 1 A 20 CYS DBB PHE DBB LEU PRO GLY GLY GLY GLY VAL CYS DBB SEQRES 2 A 20 LEU DBB DHA GLU CYS ILE TEE MODRES 1MQZ DBB A 2 THR POST-TRANSLATIONAL MODIFICATION MODRES 1MQZ DBB A 4 THR POST-TRANSLATIONAL MODIFICATION MODRES 1MQZ DBB A 13 THR POST-TRANSLATIONAL MODIFICATION MODRES 1MQZ DBB A 15 THR POST-TRANSLATIONAL MODIFICATION MODRES 1MQZ DHA A 16 SER POST-TRANSLATIONAL MODIFICATION MODRES 1MQZ TEE A 20 CYS POST-TRANSLATIONAL MODIFICATION HET DBB A 2 12 HET DBB A 4 12 HET DBB A 13 12 HET DBB A 15 12 HET DHA A 16 8 HET TEE A 20 7 HETNAM DBB D-ALPHA-AMINOBUTYRIC ACID HETNAM DHA 2-AMINO-ACRYLIC ACID HETNAM TEE 2-AMINO-ETHENETHIOL HETSYN DHA 2,3-DIDEHYDROALANINE HETSYN TEE 2-THIOETHENAMINE FORMUL 1 DBB 4(C4 H9 N O2) FORMUL 1 DHA C3 H5 N O2 FORMUL 1 TEE C2 H5 N S LINK C CYS A 1 N DBB A 2 1555 1555 1.34 LINK SG CYS A 1 CB DBB A 2 1555 1555 1.81 LINK C DBB A 2 N PHE A 3 1555 1555 1.33 LINK C PHE A 3 N DBB A 4 1555 1555 1.32 LINK C DBB A 4 N LEU A 5 1555 1555 1.33 LINK CB DBB A 4 SG CYS A 12 1555 1555 1.81 LINK C CYS A 12 N DBB A 13 1555 1555 1.33 LINK CB DBB A 13 SG CYS A 18 1555 1555 1.80 LINK C DBB A 13 N LEU A 14 1555 1555 1.32 LINK C LEU A 14 N DBB A 15 1555 1555 1.33 LINK CB DBB A 15 SG TEE A 20 1555 1555 1.81 LINK C DBB A 15 N DHA A 16 1555 1555 1.33 LINK C DHA A 16 N GLU A 17 1555 1555 1.33 LINK C ILE A 19 N TEE A 20 1555 1555 1.33 CISPEP 1 CYS A 1 DBB A 2 1 1.95 CISPEP 2 CYS A 1 DBB A 2 2 1.88 CISPEP 3 CYS A 1 DBB A 2 3 0.64 CISPEP 4 CYS A 1 DBB A 2 4 0.39 CISPEP 5 CYS A 1 DBB A 2 5 1.46 CISPEP 6 CYS A 1 DBB A 2 6 1.07 CISPEP 7 CYS A 1 DBB A 2 7 -1.75 CISPEP 8 CYS A 1 DBB A 2 8 -2.39 CISPEP 9 CYS A 1 DBB A 2 9 1.28 CISPEP 10 CYS A 1 DBB A 2 10 -3.46 CISPEP 11 CYS A 1 DBB A 2 11 4.13 CISPEP 12 CYS A 1 DBB A 2 12 -2.28 CISPEP 13 CYS A 1 DBB A 2 13 4.83 CISPEP 14 CYS A 1 DBB A 2 14 0.63 CISPEP 15 CYS A 1 DBB A 2 15 1.65 CISPEP 16 CYS A 1 DBB A 2 16 0.96 CISPEP 17 CYS A 1 DBB A 2 17 0.99 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000