PDB Short entry for 1N2M
HEADER    LYASE                                   23-OCT-02   1N2M              
TITLE     THE S53A PROENZYME STRUCTURE OF METHANOCOCCUS JANNASCHII.             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE;                 
COMPND   3 CHAIN: A, B, C, D, E, F;                                             
COMPND   4 SYNONYM: PVLARGDC;                                                   
COMPND   5 EC: 4.1.1.19;                                                        
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 OTHER_DETAILS: PROENZYME FORM                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII;                  
SOURCE   3 ORGANISM_TAXID: 2190;                                                
SOURCE   4 GENE: MJ0316;                                                        
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21-CODON-PLUS(DE3)-RIL (STRATAGENE);     
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET19B (NOVAGEN)                          
KEYWDS    PYRUVOYL GROUP, PYRUVATE, AGMATINE, ARGININE DECARBOXYLASE, LYASE     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    W.D.TOLBERT,D.E.GRAHAM,R.H.WHITE,S.E.EALICK                           
REVDAT   4   14-FEB-24 1N2M    1       REMARK                                   
REVDAT   3   15-NOV-17 1N2M    1       REMARK                                   
REVDAT   2   24-FEB-09 1N2M    1       VERSN                                    
REVDAT   1   25-MAR-03 1N2M    0                                                
JRNL        AUTH   W.D.TOLBERT,D.E.GRAHAM,R.H.WHITE,S.E.EALICK                  
JRNL        TITL   PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE FROM METHANOCOCCUS 
JRNL        TITL 2 JANNASCHII: CRYSTAL STRUCTURES OF THE SELF-CLEAVED AND S53A  
JRNL        TITL 3 PROENZYME FORMS                                              
JRNL        REF    STRUCTURE                     V.  11   285 2003              
JRNL        REFN                   ISSN 0969-2126                               
JRNL        PMID   12623016                                                     
JRNL        DOI    10.1016/S0969-2126(03)00026-1                                
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   D.E.GRAHAM,H.XU,R.H.WHITE                                    
REMARK   1  TITL   METHANOCOCCUS JANNASCHII USES A PYRUVOYL-DEPENDENT ARGININE  
REMARK   1  TITL 2 DECARBOXYLASE IN POLYAMINE BIOSYNTHESIS                      
REMARK   1  REF    J.BIOL.CHEM.                  V. 277 23500 2002              
REMARK   1  REFN                   ISSN 0021-9258                               
REMARK   1  DOI    10.1074/JBC.M203467200                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 28.69                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : NULL                           
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 87.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 59911                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.186                           
REMARK   3   FREE R VALUE                     : 0.221                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 10.000                          
REMARK   3   FREE R VALUE TEST SET COUNT      : 5966                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.003                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.90                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.02                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 52.70                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 5440                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2280                       
REMARK   3   BIN FREE R VALUE                    : 0.2600                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 9.40                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 565                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.011                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 7132                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 64                                      
REMARK   3   SOLVENT ATOMS            : 498                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 10.80                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 25.70                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -5.09000                                             
REMARK   3    B22 (A**2) : 12.54000                                             
REMARK   3    B33 (A**2) : -7.45000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.35000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.20                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.16                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.25                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.20                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.006                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.400                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 25.00                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.200                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.470 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.240 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 2.200 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 3.230 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.41                                                 
REMARK   3   BSOL        : 33.24                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEINMAO.PARAM                               
REMARK   3  PARAMETER FILE  2  : WATER.PARAM                                    
REMARK   3  PARAMETER FILE  3  : MPD.PARAM                                      
REMARK   3  PARAMETER FILE  4  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEINMAO.TOP                                 
REMARK   3  TOPOLOGY FILE  2   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  3   : MPD.TOP                                        
REMARK   3  TOPOLOGY FILE  4   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1N2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-02.                  
REMARK 100 THE DEPOSITION ID IS D_1000017440.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 28-SEP-02                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : CHESS                              
REMARK 200  BEAMLINE                       : A1                                 
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.947                              
REMARK 200  MONOCHROMATOR                  : SI (111)                           
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 210                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 61718                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.900                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 28.700                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 90.2                               
REMARK 200  DATA REDUNDANCY                : 3.000                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.06100                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 12.4000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.97                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 51.5                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 1.85                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.26200                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 5.200                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 1MT1                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 38.36                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000, 2-METHYL-2,4-PENTANEDIOL,      
REMARK 280  GLYCEROL, N-[2-HYDROXYETHYL]PIPERAZINE-N'-[2-ETHANSULFONIC ACID],   
REMARK 280  BETA-OCTYL GLUCOSIDE, PUTRESCINE, ETHYLENEDIAMINETETRAACETIC        
REMARK 280  ACID, DITHIOTHREITOL, PH 7.0, VAPOR DIFFUSION, HANGING DROP,        
REMARK 280  TEMPERATURE 298K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       45.65500            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2                                                    
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: TWO PROENZYME TRIMERS ARE IN THE ASYMMETRIC UNIT.            
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 7850 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 18540 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 7340 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 17440 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     ASN A     2                                                      
REMARK 465     ALA A     3                                                      
REMARK 465     GLU A     4                                                      
REMARK 465     ILE A     5                                                      
REMARK 465     ASN A     6                                                      
REMARK 465     MET B     1                                                      
REMARK 465     ASN B     2                                                      
REMARK 465     ALA B     3                                                      
REMARK 465     GLU B     4                                                      
REMARK 465     ILE B     5                                                      
REMARK 465     MET C     1                                                      
REMARK 465     ASN C     2                                                      
REMARK 465     MET D     1                                                      
REMARK 465     ASN D     2                                                      
REMARK 465     ALA D     3                                                      
REMARK 465     GLU D     4                                                      
REMARK 465     ILE D     5                                                      
REMARK 465     ASN D     6                                                      
REMARK 465     PRO D     7                                                      
REMARK 465     LEU D     8                                                      
REMARK 465     HIS D     9                                                      
REMARK 465     ALA D    10                                                      
REMARK 465     TYR D    11                                                      
REMARK 465     MET E     1                                                      
REMARK 465     ASN E     2                                                      
REMARK 465     ALA E     3                                                      
REMARK 465     MET F     1                                                      
REMARK 465     ASN F     2                                                      
REMARK 465     ALA F     3                                                      
REMARK 465     GLU F     4                                                      
REMARK 465     ILE F     5                                                      
REMARK 465     ASN F     6                                                      
REMARK 465     PRO F     7                                                      
REMARK 465     LEU F     8                                                      
REMARK 465     HIS F     9                                                      
REMARK 465     ALA F    10                                                      
REMARK 465     TYR F    11                                                      
REMARK 465     PHE F    12                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ALA A  53       84.25     87.88                                   
REMARK 500    LYS A 152      -53.62   -134.56                                   
REMARK 500    LYS A 152      -53.34   -134.56                                   
REMARK 500    LYS B  13     -169.04   -103.75                                   
REMARK 500    ALA B  53       86.15     89.82                                   
REMARK 500    LYS B 152      -52.00   -142.50                                   
REMARK 500    ALA C  53       68.54    108.10                                   
REMARK 500    GLU C  58       -2.72     71.01                                   
REMARK 500    LYS C 152      -51.42   -134.24                                   
REMARK 500    SER D  52      -70.11    -72.30                                   
REMARK 500    ALA D  53       31.44   -173.27                                   
REMARK 500    LYS D 152      -49.61   -135.39                                   
REMARK 500    ALA E  53       38.95   -178.45                                   
REMARK 500    LYS E 152      -53.90   -130.43                                   
REMARK 500    ALA F  53       90.99     88.89                                   
REMARK 500    GLU F  58       -0.24     67.04                                   
REMARK 500    LYS F 152      -51.46   -134.12                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 7001                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD F 7002                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD D 7003                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD E 7004                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD C 7005                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 7006                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD D 7007                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 7008                
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1MT1   RELATED DB: PDB                                   
REMARK 900 ORIGINAL STRUCTURE (SELENOMETHIONINE LABELED ENZYME)                 
REMARK 900 RELATED ID: 1N13   RELATED DB: PDB                                   
REMARK 900 NATIVE STRUCTURE/AGMATINE COMPLEX                                    
DBREF  1N2M A    1   165  UNP    Q57764   PDAD_METJA       1    165             
DBREF  1N2M B    1   165  UNP    Q57764   PDAD_METJA       1    165             
DBREF  1N2M C    1   165  UNP    Q57764   PDAD_METJA       1    165             
DBREF  1N2M D    1   165  UNP    Q57764   PDAD_METJA       1    165             
DBREF  1N2M E    1   165  UNP    Q57764   PDAD_METJA       1    165             
DBREF  1N2M F    1   165  UNP    Q57764   PDAD_METJA       1    165             
SEQADV 1N2M ALA A   53  UNP  Q57764    SER    53 SEE REMARK 999                 
SEQADV 1N2M ALA B   53  UNP  Q57764    SER    53 SEE REMARK 999                 
SEQADV 1N2M ALA C   53  UNP  Q57764    SER    53 SEE REMARK 999                 
SEQADV 1N2M ALA D   53  UNP  Q57764    SER    53 SEE REMARK 999                 
SEQADV 1N2M ALA E   53  UNP  Q57764    SER    53 SEE REMARK 999                 
SEQADV 1N2M ALA F   53  UNP  Q57764    SER    53 SEE REMARK 999                 
SEQRES   1 A  165  MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE LYS          
SEQRES   2 A  165  LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER GLU          
SEQRES   3 A  165  GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU LEU          
SEQRES   4 A  165  ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SER          
SEQRES   5 A  165  ALA ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO          
SEQRES   6 A  165  LYS LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY          
SEQRES   7 A  165  TYR ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA          
SEQRES   8 A  165  ALA ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS          
SEQRES   9 A  165  GLY LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS LYS          
SEQRES  10 A  165  GLU ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY          
SEQRES  11 A  165  PHE GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER          
SEQRES  12 A  165  ILE ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA          
SEQRES  13 A  165  PHE ALA ALA ALA ALA LEU TRP TYR LYS                          
SEQRES   1 B  165  MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE LYS          
SEQRES   2 B  165  LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER GLU          
SEQRES   3 B  165  GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU LEU          
SEQRES   4 B  165  ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SER          
SEQRES   5 B  165  ALA ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO          
SEQRES   6 B  165  LYS LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY          
SEQRES   7 B  165  TYR ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA          
SEQRES   8 B  165  ALA ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS          
SEQRES   9 B  165  GLY LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS LYS          
SEQRES  10 B  165  GLU ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY          
SEQRES  11 B  165  PHE GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER          
SEQRES  12 B  165  ILE ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA          
SEQRES  13 B  165  PHE ALA ALA ALA ALA LEU TRP TYR LYS                          
SEQRES   1 C  165  MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE LYS          
SEQRES   2 C  165  LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER GLU          
SEQRES   3 C  165  GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU LEU          
SEQRES   4 C  165  ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SER          
SEQRES   5 C  165  ALA ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO          
SEQRES   6 C  165  LYS LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY          
SEQRES   7 C  165  TYR ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA          
SEQRES   8 C  165  ALA ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS          
SEQRES   9 C  165  GLY LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS LYS          
SEQRES  10 C  165  GLU ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY          
SEQRES  11 C  165  PHE GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER          
SEQRES  12 C  165  ILE ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA          
SEQRES  13 C  165  PHE ALA ALA ALA ALA LEU TRP TYR LYS                          
SEQRES   1 D  165  MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE LYS          
SEQRES   2 D  165  LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER GLU          
SEQRES   3 D  165  GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU LEU          
SEQRES   4 D  165  ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SER          
SEQRES   5 D  165  ALA ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO          
SEQRES   6 D  165  LYS LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY          
SEQRES   7 D  165  TYR ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA          
SEQRES   8 D  165  ALA ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS          
SEQRES   9 D  165  GLY LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS LYS          
SEQRES  10 D  165  GLU ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY          
SEQRES  11 D  165  PHE GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER          
SEQRES  12 D  165  ILE ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA          
SEQRES  13 D  165  PHE ALA ALA ALA ALA LEU TRP TYR LYS                          
SEQRES   1 E  165  MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE LYS          
SEQRES   2 E  165  LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER GLU          
SEQRES   3 E  165  GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU LEU          
SEQRES   4 E  165  ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SER          
SEQRES   5 E  165  ALA ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO          
SEQRES   6 E  165  LYS LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY          
SEQRES   7 E  165  TYR ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA          
SEQRES   8 E  165  ALA ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS          
SEQRES   9 E  165  GLY LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS LYS          
SEQRES  10 E  165  GLU ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY          
SEQRES  11 E  165  PHE GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER          
SEQRES  12 E  165  ILE ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA          
SEQRES  13 E  165  PHE ALA ALA ALA ALA LEU TRP TYR LYS                          
SEQRES   1 F  165  MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE LYS          
SEQRES   2 F  165  LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER GLU          
SEQRES   3 F  165  GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU LEU          
SEQRES   4 F  165  ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SER          
SEQRES   5 F  165  ALA ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO          
SEQRES   6 F  165  LYS LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY          
SEQRES   7 F  165  TYR ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA          
SEQRES   8 F  165  ALA ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS          
SEQRES   9 F  165  GLY LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS LYS          
SEQRES  10 F  165  GLU ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY          
SEQRES  11 F  165  PHE GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER          
SEQRES  12 F  165  ILE ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA          
SEQRES  13 F  165  PHE ALA ALA ALA ALA LEU TRP TYR LYS                          
HET    MRD  A7006       8                                                       
HET    MRD  B7001       8                                                       
HET    MRD  B7008       8                                                       
HET    MRD  C7005       8                                                       
HET    MRD  D7003       8                                                       
HET    MRD  D7007       8                                                       
HET    MRD  E7004       8                                                       
HET    MRD  F7002       8                                                       
HETNAM     MRD (4R)-2-METHYLPENTANE-2,4-DIOL                                    
FORMUL   7  MRD    8(C6 H14 O2)                                                 
FORMUL  15  HOH   *498(H2 O)                                                    
HELIX    1   1 THR A   29  GLY A   42  1                                  14    
HELIX    2   2 SER A  115  GLY A  135  1                                  21    
HELIX    3   3 HIS B    9  LYS B   13  5                                   5    
HELIX    4   4 THR B   29  GLY B   42  1                                  14    
HELIX    5   5 SER B  115  GLY B  135  1                                  21    
HELIX    6   6 THR C   29  GLY C   42  1                                  14    
HELIX    7   7 SER C  115  GLY C  135  1                                  21    
HELIX    8   8 THR D   29  GLY D   42  1                                  14    
HELIX    9   9 SER D  115  GLY D  135  1                                  21    
HELIX   10  10 THR E   29  GLY E   42  1                                  14    
HELIX   11  11 SER E  115  GLY E  135  1                                  21    
HELIX   12  12 THR F   29  GLY F   42  1                                  14    
HELIX   13  13 SER F  115  GLY F  135  1                                  21    
SHEET    1   A 5 ASN A  47  ARG A  50  0                                        
SHEET    2   A 5 LEU A  72  SER A  82  1  O  THR A  75   N  ILE A  49           
SHEET    3   A 5 GLY A 154  TRP A 163 -1  O  ALA A 160   N  ALA A  76           
SHEET    4   A 5 THR A  17  GLU A  26 -1  N  VAL A  21   O  ALA A 159           
SHEET    5   A 5 GLU A  60  ILE A  61  1  O  GLU A  60   N  VAL A  18           
SHEET    1   B 4 ILE A  54  MET A  55  0                                        
SHEET    2   B 4 GLY A 105  GLY A 112 -1  O  GLY A 105   N  MET A  55           
SHEET    3   B 4 THR A  88  PRO A  98 -1  N  ALA A  96   O  LEU A 106           
SHEET    4   B 4 LEU A 138  THR A 149 -1  O  HIS A 148   N  ILE A  89           
SHEET    1   C 5 ASN B  47  ARG B  50  0                                        
SHEET    2   C 5 LEU B  72  SER B  82  1  O  THR B  75   N  ILE B  49           
SHEET    3   C 5 GLY B 154  TRP B 163 -1  O  ALA B 160   N  ALA B  76           
SHEET    4   C 5 THR B  17  GLU B  26 -1  N  VAL B  21   O  ALA B 159           
SHEET    5   C 5 GLU B  60  ILE B  61  1  O  GLU B  60   N  VAL B  18           
SHEET    1   D 4 ILE B  54  MET B  55  0                                        
SHEET    2   D 4 GLY B 105  GLY B 112 -1  O  GLY B 105   N  MET B  55           
SHEET    3   D 4 THR B  88  PRO B  98 -1  N  SER B  90   O  GLY B 112           
SHEET    4   D 4 LEU B 138  THR B 149 -1  O  ASP B 139   N  ILE B  97           
SHEET    1   E 5 ASN C  47  ARG C  50  0                                        
SHEET    2   E 5 LEU C  72  SER C  82  1  O  VAL C  73   N  ASN C  47           
SHEET    3   E 5 GLY C 154  TRP C 163 -1  O  ALA C 160   N  ALA C  76           
SHEET    4   E 5 THR C  17  GLU C  26 -1  N  VAL C  21   O  ALA C 159           
SHEET    5   E 5 GLU C  60  ILE C  61  1  O  GLU C  60   N  VAL C  18           
SHEET    1   F 4 ILE C  54  MET C  55  0                                        
SHEET    2   F 4 GLY C 105  GLY C 112 -1  O  GLY C 105   N  MET C  55           
SHEET    3   F 4 THR C  88  PRO C  98 -1  N  ALA C  96   O  LEU C 106           
SHEET    4   F 4 LEU C 138  THR C 149 -1  O  ASP C 139   N  ILE C  97           
SHEET    1   G 5 ASN D  47  ARG D  50  0                                        
SHEET    2   G 5 LEU D  72  SER D  82  1  O  VAL D  73   N  ILE D  49           
SHEET    3   G 5 GLY D 154  TRP D 163 -1  O  ALA D 160   N  ALA D  76           
SHEET    4   G 5 THR D  17  GLU D  26 -1  N  VAL D  21   O  ALA D 159           
SHEET    5   G 5 GLU D  60  ILE D  61  1  O  GLU D  60   N  VAL D  18           
SHEET    1   H 4 ILE D  54  MET D  55  0                                        
SHEET    2   H 4 GLY D 105  GLY D 112 -1  O  GLY D 105   N  MET D  55           
SHEET    3   H 4 THR D  88  PRO D  98 -1  N  ALA D  92   O  TYR D 110           
SHEET    4   H 4 LEU D 138  THR D 149 -1  O  ARG D 140   N  ILE D  97           
SHEET    1   I 5 ASN E  47  ARG E  50  0                                        
SHEET    2   I 5 LEU E  72  SER E  82  1  O  THR E  75   N  ILE E  49           
SHEET    3   I 5 GLY E 154  TRP E 163 -1  O  ALA E 160   N  ALA E  76           
SHEET    4   I 5 THR E  17  GLU E  26 -1  N  SER E  19   O  ALA E 161           
SHEET    5   I 5 GLU E  60  ILE E  61  1  O  GLU E  60   N  VAL E  18           
SHEET    1   J 4 ILE E  54  MET E  55  0                                        
SHEET    2   J 4 GLY E 105  GLY E 112 -1  O  GLY E 105   N  MET E  55           
SHEET    3   J 4 THR E  88  PRO E  98 -1  N  ALA E  92   O  TYR E 110           
SHEET    4   J 4 LEU E 138  THR E 149 -1  O  ARG E 140   N  ILE E  97           
SHEET    1   K 5 ASN F  47  ARG F  50  0                                        
SHEET    2   K 5 LEU F  72  SER F  82  1  O  THR F  75   N  ILE F  49           
SHEET    3   K 5 GLY F 154  TRP F 163 -1  O  ALA F 160   N  ALA F  76           
SHEET    4   K 5 THR F  17  GLU F  26 -1  N  VAL F  21   O  ALA F 159           
SHEET    5   K 5 GLU F  60  ILE F  61  1  O  GLU F  60   N  VAL F  18           
SHEET    1   L 4 ILE F  54  MET F  55  0                                        
SHEET    2   L 4 GLY F 105  GLY F 112 -1  O  GLY F 105   N  MET F  55           
SHEET    3   L 4 THR F  88  PRO F  98 -1  N  ALA F  96   O  LEU F 106           
SHEET    4   L 4 LEU F 138  THR F 149 -1  O  ARG F 140   N  ILE F  97           
SITE     1 AC1  5 GLU A 109  PHE B  34  TYR B  77  TYR B  79                    
SITE     2 AC1  5 ILE B  81                                                     
SITE     1 AC2  6 GLU D 109  HOH D6487  LEU F  31  TYR F  77                    
SITE     2 AC2  6 TYR F  79  ILE F  81                                          
SITE     1 AC3  5 LEU D  31  PHE D  34  TYR D  79  ILE D  81                    
SITE     2 AC3  5 GLU E 109                                                     
SITE     1 AC4  5 LEU E  31  TYR E  77  TYR E  79  ILE E  81                    
SITE     2 AC4  5 GLU F 109                                                     
SITE     1 AC5  6 GLU B 109  LEU C  31  PHE C  34  TYR C  77                    
SITE     2 AC5  6 TYR C  79  ILE C  81                                          
SITE     1 AC6  1 TYR A  79                                                     
SITE     1 AC7  7 PHE D 131  GLU D 132  GLY D 135  TRP D 136                    
SITE     2 AC7  7 GLY F 135  TRP F 136  GLU F 137                               
SITE     1 AC8  6 GLU B 132  GLY B 135  TRP B 136  GLY C 135                    
SITE     2 AC8  6 TRP C 136  GLU C 137                                          
CRYST1   56.260   91.310   86.200  90.00  94.72  90.00 P 1 21 1     12          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.017775  0.000000  0.001468        0.00000                         
SCALE2      0.000000  0.010952  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.011640        0.00000