PDB Short entry for 1N54 HEADER RNA BINDING PROTEIN 04-NOV-02 1N54 TITLE CAP BINDING COMPLEX M7GPPPG FREE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 80 KDA NUCLEAR CAP BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NCBP 80 KDA SUBUNIT, CAP BINDING PROTEIN 80, CBP80; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 20 KDA NUCLEAR CAP BINDING PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: NCBP 20 KDA SUBUNIT, CAP BINDING PROTEIN 20, CBP20, NCBP COMPND 10 INTERACTING PROTEIN 1, NIP1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBP80; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PBACPAK; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: CBP20; SOURCE 17 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 18 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 22 EXPRESSION_SYSTEM_VECTOR: PBACPAK KEYWDS CBP80, CBBP20, NUCLEAR CAP BINDING COMPLEX, M7GPPPG, RNP DOMAIN, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.CALERO,K.WILSON,T.LY,J.RIOS-STEINER,J.CLARDY,R.CERIONE REVDAT 5 14-FEB-24 1N54 1 REMARK REVDAT 4 13-JUL-11 1N54 1 VERSN REVDAT 3 24-FEB-09 1N54 1 VERSN REVDAT 2 13-JAN-04 1N54 1 JRNL REMARK REVDAT 1 18-FEB-03 1N54 0 JRNL AUTH G.CALERO,K.WILSON,T.LY,J.RIOS-STEINER,J.CLARDY,R.CERIONE JRNL TITL STRUCTURAL BASIS OF M7GPPPG BINDING TO THE NUCLEAR JRNL TITL 2 CAP-BINDING PROTEIN COMPLEX. JRNL REF NAT.STRUCT.BIOL. V. 9 912 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 12434151 JRNL DOI 10.1038/NSB874 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 72.9 REMARK 3 NUMBER OF REFLECTIONS : 25307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2312 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.84 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 24.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 936 REMARK 3 BIN R VALUE (WORKING SET) : 0.4040 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 114 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.038 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6995 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.27000 REMARK 3 B22 (A**2) : -8.27000 REMARK 3 B33 (A**2) : 16.53000 REMARK 3 B12 (A**2) : 22.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM SIGMAA (A) : 0.74 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.75 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.26 REMARK 3 BSOL : 21.25 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GOL_PARAMETER.PARAM REMARK 3 PARAMETER FILE 5 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : GOL_TOPOLOGY.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DATA SET HAD 15% TWINNING. USED CNS REMARK 3 TWINNING REFINEMENT REMARK 4 REMARK 4 1N54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017529. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.943 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33886 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 48.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1N52 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, MAGNESIUM CHLORIDE, GLYCEROL, REMARK 280 TRIS, GLYCINE, ETHYLENE GLYCOL, PH 7.25, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.15333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.57667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.57667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 117.15333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 HIS A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 ASP A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 GLN A 14 REMARK 465 PRO A 15 REMARK 465 HIS A 16 REMARK 465 LYS A 17 REMARK 465 ARG A 18 REMARK 465 ARG A 19 REMARK 465 LYS A 20 REMARK 465 THR A 21 REMARK 465 SER A 22 REMARK 465 ASP A 23 REMARK 465 PRO A 527 REMARK 465 ASN A 528 REMARK 465 GLN A 529 REMARK 465 ASP A 530 REMARK 465 ASP A 531 REMARK 465 ASP A 532 REMARK 465 ASP A 533 REMARK 465 ASP A 534 REMARK 465 GLU A 535 REMARK 465 GLY A 536 REMARK 465 PHE A 537 REMARK 465 SER A 538 REMARK 465 LEU A 666 REMARK 465 ALA A 667 REMARK 465 ARG A 668 REMARK 465 GLN A 669 REMARK 465 HIS A 670 REMARK 465 LYS A 671 REMARK 465 ARG A 672 REMARK 465 ARG A 673 REMARK 465 SER A 674 REMARK 465 ASP A 675 REMARK 465 ASP A 676 REMARK 465 ASP A 677 REMARK 465 ASP A 678 REMARK 465 ARG A 679 REMARK 465 SER A 680 REMARK 465 SER A 681 REMARK 465 ASP A 682 REMARK 465 ARG A 683 REMARK 465 LYS A 684 REMARK 465 ASP A 685 REMARK 465 GLY A 686 REMARK 465 VAL A 687 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 LEU B 5 REMARK 465 ARG B 127 REMARK 465 GLY B 128 REMARK 465 ARG B 129 REMARK 465 SER B 130 REMARK 465 GLY B 131 REMARK 465 GLY B 132 REMARK 465 GLN B 133 REMARK 465 VAL B 134 REMARK 465 ARG B 135 REMARK 465 ASP B 136 REMARK 465 GLU B 137 REMARK 465 TYR B 138 REMARK 465 ARG B 139 REMARK 465 GLN B 140 REMARK 465 ASP B 141 REMARK 465 TYR B 142 REMARK 465 ASP B 143 REMARK 465 ALA B 144 REMARK 465 GLY B 145 REMARK 465 ARG B 146 REMARK 465 GLY B 147 REMARK 465 GLY B 148 REMARK 465 TYR B 149 REMARK 465 GLY B 150 REMARK 465 LYS B 151 REMARK 465 LEU B 152 REMARK 465 ALA B 153 REMARK 465 GLN B 154 REMARK 465 ASN B 155 REMARK 465 GLN B 156 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 27 O HOH A 1627 1.93 REMARK 500 OE2 GLU B 31 O HOH B 1578 2.01 REMARK 500 O PHE A 413 O HOH A 1695 2.11 REMARK 500 OH TYR A 185 OD2 ASP A 193 2.11 REMARK 500 OD2 ASP A 580 O HOH A 1645 2.12 REMARK 500 NH2 ARG A 251 O HOH A 1747 2.16 REMARK 500 NH2 ARG A 165 O PRO A 274 2.18 REMARK 500 CG2 THR A 513 O HOH A 1743 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD LYS A 187 CD LYS A 187 5675 1.70 REMARK 500 O HOH A 1599 O HOH A 1599 6555 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 64 104.62 51.63 REMARK 500 SER A 66 -45.92 -16.83 REMARK 500 LEU A 83 -86.96 -30.47 REMARK 500 ALA A 95 33.92 -77.14 REMARK 500 ARG A 96 -23.00 -154.92 REMARK 500 ASN A 119 41.06 71.04 REMARK 500 VAL A 139 -45.59 -135.83 REMARK 500 PHE A 173 -96.44 -73.89 REMARK 500 LEU A 174 -42.51 -18.29 REMARK 500 TRP A 179 -83.73 -98.66 REMARK 500 LYS A 188 17.55 53.67 REMARK 500 VAL A 211 -50.26 -23.05 REMARK 500 ARG A 247 37.24 -143.29 REMARK 500 HIS A 248 -32.92 -145.14 REMARK 500 TYR A 253 39.54 -86.64 REMARK 500 GLN A 265 167.31 -49.30 REMARK 500 GLU A 278 13.14 -61.80 REMARK 500 PRO A 283 137.04 -37.75 REMARK 500 HIS A 325 48.10 -101.24 REMARK 500 SER A 338 54.92 -105.23 REMARK 500 LYS A 342 -71.41 -47.10 REMARK 500 GLN A 361 104.34 -50.98 REMARK 500 PRO A 363 -74.79 -65.51 REMARK 500 HIS A 367 -164.69 -125.13 REMARK 500 SER A 386 -52.74 -121.78 REMARK 500 PRO A 388 -72.87 -47.35 REMARK 500 GLN A 389 -36.50 -38.09 REMARK 500 GLN A 425 46.74 32.06 REMARK 500 PHE A 426 34.61 36.38 REMARK 500 GLU A 431 -9.99 -52.65 REMARK 500 ARG A 450 -70.42 -59.18 REMARK 500 SER A 460 -124.86 -154.20 REMARK 500 HIS A 462 -35.14 -36.07 REMARK 500 PRO A 481 40.58 -65.40 REMARK 500 TYR A 487 57.66 -110.19 REMARK 500 SER A 494 0.57 -66.46 REMARK 500 LYS A 511 46.93 80.94 REMARK 500 ARG A 595 -2.98 -55.88 REMARK 500 HIS A 597 84.25 -154.62 REMARK 500 ASP A 606 -71.99 -55.44 REMARK 500 GLU A 664 23.37 -67.40 REMARK 500 GLU A 689 6.49 -68.51 REMARK 500 GLU A 690 3.42 -58.94 REMARK 500 LEU A 721 -65.02 -99.35 REMARK 500 LEU A 736 67.85 -67.52 REMARK 500 GLN A 759 -17.35 -48.15 REMARK 500 LEU A 768 -53.99 -122.80 REMARK 500 ILE A 778 -71.34 -80.17 REMARK 500 LEU A 779 -38.73 -35.72 REMARK 500 LYS B 7 -138.38 -123.95 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1555 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1556 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1557 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1558 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1559 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1560 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1561 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H2T RELATED DB: PDB REMARK 900 THE SAME PROTEIN BUT GENETICALLY ENGINEERED REMARK 900 RELATED ID: 1H2V RELATED DB: PDB REMARK 900 THE SAME PROTEIN BUT GENETICALLY ENGINEERED REMARK 900 RELATED ID: 1H2U RELATED DB: PDB REMARK 900 THE SAME PROTEIN BUT GENETICALLY ENGINEERED REMARK 900 RELATED ID: 1H6K RELATED DB: PDB REMARK 900 THE SAME PROTEIN BUT PROTEOLIZED REMARK 900 RELATED ID: 1N52 RELATED DB: PDB REMARK 900 THE SAME PROTEIN BUT WITH M7GPPPG DBREF 1N54 A 1 790 UNP Q09161 CB80_HUMAN 1 790 DBREF 1N54 B 1 156 UNP P52298 NCBP2_HUMAN 1 156 SEQRES 1 A 790 MET SER ARG ARG ARG HIS SER ASP GLU ASN ASP GLY GLY SEQRES 2 A 790 GLN PRO HIS LYS ARG ARG LYS THR SER ASP ALA ASN GLU SEQRES 3 A 790 THR GLU ASP HIS LEU GLU SER LEU ILE CYS LYS VAL GLY SEQRES 4 A 790 GLU LYS SER ALA CYS SER LEU GLU SER ASN LEU GLU GLY SEQRES 5 A 790 LEU ALA GLY VAL LEU GLU ALA ASP LEU PRO ASN TYR LYS SEQRES 6 A 790 SER LYS ILE LEU ARG LEU LEU CYS THR VAL ALA ARG LEU SEQRES 7 A 790 LEU PRO GLU LYS LEU THR ILE TYR THR THR LEU VAL GLY SEQRES 8 A 790 LEU LEU ASN ALA ARG ASN TYR ASN PHE GLY GLY GLU PHE SEQRES 9 A 790 VAL GLU ALA MET ILE ARG GLN LEU LYS GLU SER LEU LYS SEQRES 10 A 790 ALA ASN ASN TYR ASN GLU ALA VAL TYR LEU VAL ARG PHE SEQRES 11 A 790 LEU SER ASP LEU VAL ASN CYS HIS VAL ILE ALA ALA PRO SEQRES 12 A 790 SER MET VAL ALA MET PHE GLU ASN PHE VAL SER VAL THR SEQRES 13 A 790 GLN GLU GLU ASP VAL PRO GLN VAL ARG ARG ASP TRP TYR SEQRES 14 A 790 VAL TYR ALA PHE LEU SER SER LEU PRO TRP VAL GLY LYS SEQRES 15 A 790 GLU LEU TYR GLU LYS LYS ASP ALA GLU MET ASP ARG ILE SEQRES 16 A 790 PHE ALA ASN THR GLU SER TYR LEU LYS ARG ARG GLN LYS SEQRES 17 A 790 THR HIS VAL PRO MET LEU GLN VAL TRP THR ALA ASP LYS SEQRES 18 A 790 PRO HIS PRO GLN GLU GLU TYR LEU ASP CYS LEU TRP ALA SEQRES 19 A 790 GLN ILE GLN LYS LEU LYS LYS ASP ARG TRP GLN GLU ARG SEQRES 20 A 790 HIS ILE LEU ARG PRO TYR LEU ALA PHE ASP SER ILE LEU SEQRES 21 A 790 CYS GLU ALA LEU GLN HIS ASN LEU PRO PRO PHE THR PRO SEQRES 22 A 790 PRO PRO HIS THR GLU ASP SER VAL TYR PRO MET PRO ARG SEQRES 23 A 790 VAL ILE PHE ARG MET PHE ASP TYR THR ASP ASP PRO GLU SEQRES 24 A 790 GLY PRO VAL MET PRO GLY SER HIS SER VAL GLU ARG PHE SEQRES 25 A 790 VAL ILE GLU GLU ASN LEU HIS CYS ILE ILE LYS SER HIS SEQRES 26 A 790 TRP LYS GLU ARG LYS THR CYS ALA ALA GLN LEU VAL SER SEQRES 27 A 790 TYR PRO GLY LYS ASN LYS ILE PRO LEU ASN TYR HIS ILE SEQRES 28 A 790 VAL GLU VAL ILE PHE ALA GLU LEU PHE GLN LEU PRO ALA SEQRES 29 A 790 PRO PRO HIS ILE ASP VAL MET TYR THR THR LEU LEU ILE SEQRES 30 A 790 GLU LEU CYS LYS LEU GLN PRO GLY SER LEU PRO GLN VAL SEQRES 31 A 790 LEU ALA GLN ALA THR GLU MET LEU TYR MET ARG LEU ASP SEQRES 32 A 790 THR MET ASN THR THR CYS VAL ASP ARG PHE ILE ASN TRP SEQRES 33 A 790 PHE SER HIS HIS LEU SER ASN PHE GLN PHE ARG TRP SER SEQRES 34 A 790 TRP GLU ASP TRP SER ASP CYS LEU SER GLN ASP PRO GLU SEQRES 35 A 790 SER PRO LYS PRO LYS PHE VAL ARG GLU VAL LEU GLU LYS SEQRES 36 A 790 CYS MET ARG LEU SER TYR HIS GLN ARG ILE LEU ASP ILE SEQRES 37 A 790 VAL PRO PRO THR PHE SER ALA LEU CYS PRO ALA ASN PRO SEQRES 38 A 790 THR CYS ILE TYR LYS TYR GLY ASP GLU SER SER ASN SER SEQRES 39 A 790 LEU PRO GLY HIS SER VAL ALA LEU CYS LEU ALA VAL ALA SEQRES 40 A 790 PHE LYS SER LYS ALA THR ASN ASP GLU ILE PHE SER ILE SEQRES 41 A 790 LEU LYS ASP VAL PRO ASN PRO ASN GLN ASP ASP ASP ASP SEQRES 42 A 790 ASP GLU GLY PHE SER PHE ASN PRO LEU LYS ILE GLU VAL SEQRES 43 A 790 PHE VAL GLN THR LEU LEU HIS LEU ALA ALA LYS SER PHE SEQRES 44 A 790 SER HIS SER PHE SER ALA LEU ALA LYS PHE HIS GLU VAL SEQRES 45 A 790 PHE LYS THR LEU ALA GLU SER ASP GLU GLY LYS LEU HIS SEQRES 46 A 790 VAL LEU ARG VAL MET PHE GLU VAL TRP ARG ASN HIS PRO SEQRES 47 A 790 GLN MET ILE ALA VAL LEU VAL ASP LYS MET ILE ARG THR SEQRES 48 A 790 GLN ILE VAL ASP CYS ALA ALA VAL ALA ASN TRP ILE PHE SEQRES 49 A 790 SER SER GLU LEU SER ARG ASP PHE THR ARG LEU PHE VAL SEQRES 50 A 790 TRP GLU ILE LEU HIS SER THR ILE ARG LYS MET ASN LYS SEQRES 51 A 790 HIS VAL LEU LYS ILE GLN LYS GLU LEU GLU GLU ALA LYS SEQRES 52 A 790 GLU LYS LEU ALA ARG GLN HIS LYS ARG ARG SER ASP ASP SEQRES 53 A 790 ASP ASP ARG SER SER ASP ARG LYS ASP GLY VAL LEU GLU SEQRES 54 A 790 GLU GLN ILE GLU ARG LEU GLN GLU LYS VAL GLU SER ALA SEQRES 55 A 790 GLN SER GLU GLN LYS ASN LEU PHE LEU VAL ILE PHE GLN SEQRES 56 A 790 ARG PHE ILE MET ILE LEU THR GLU HIS LEU VAL ARG CYS SEQRES 57 A 790 GLU THR ASP GLY THR SER VAL LEU THR PRO TRP TYR LYS SEQRES 58 A 790 ASN CYS ILE GLU ARG LEU GLN GLN ILE PHE LEU GLN HIS SEQRES 59 A 790 HIS GLN ILE ILE GLN GLN TYR MET VAL THR LEU GLU ASN SEQRES 60 A 790 LEU LEU PHE THR ALA GLU LEU ASP PRO HIS ILE LEU ALA SEQRES 61 A 790 VAL PHE GLN GLN PHE CYS ALA LEU GLN ALA SEQRES 1 B 156 MET SER GLY GLY LEU LEU LYS ALA LEU ARG SER ASP SER SEQRES 2 B 156 TYR VAL GLU LEU SER GLN TYR ARG ASP GLN HIS PHE ARG SEQRES 3 B 156 GLY ASP ASN GLU GLU GLN GLU LYS LEU LEU LYS LYS SER SEQRES 4 B 156 CYS THR LEU TYR VAL GLY ASN LEU SER PHE TYR THR THR SEQRES 5 B 156 GLU GLU GLN ILE TYR GLU LEU PHE SER LYS SER GLY ASP SEQRES 6 B 156 ILE LYS LYS ILE ILE MET GLY LEU ASP LYS MET LYS LYS SEQRES 7 B 156 THR ALA CYS GLY PHE CYS PHE VAL GLU TYR TYR SER ARG SEQRES 8 B 156 ALA ASP ALA GLU ASN ALA MET ARG TYR ILE ASN GLY THR SEQRES 9 B 156 ARG LEU ASP ASP ARG ILE ILE ARG THR ASP TRP ASP ALA SEQRES 10 B 156 GLY PHE LYS GLU GLY ARG GLN TYR GLY ARG GLY ARG SER SEQRES 11 B 156 GLY GLY GLN VAL ARG ASP GLU TYR ARG GLN ASP TYR ASP SEQRES 12 B 156 ALA GLY ARG GLY GLY TYR GLY LYS LEU ALA GLN ASN GLN HET GOL A1556 6 HET GOL A1557 6 HET GOL A1558 6 HET GOL A1560 6 HET GOL B1555 6 HET GOL B1559 6 HET GOL B1561 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 7(C3 H8 O3) FORMUL 10 HOH *255(H2 O) HELIX 1 1 ASN A 25 GLU A 40 1 16 HELIX 2 2 SER A 45 ALA A 59 1 15 HELIX 3 3 LYS A 65 LEU A 79 1 15 HELIX 4 4 LYS A 82 ALA A 95 1 14 HELIX 5 5 ASN A 97 ALA A 118 1 22 HELIX 6 6 ASN A 120 VAL A 135 1 16 HELIX 7 7 ASN A 136 HIS A 138 5 3 HELIX 8 8 ALA A 141 SER A 154 1 14 HELIX 9 9 VAL A 155 GLU A 158 5 4 HELIX 10 10 PRO A 162 TYR A 185 1 24 HELIX 11 11 ASP A 193 ARG A 205 1 13 HELIX 12 12 HIS A 210 GLN A 215 1 6 HELIX 13 13 GLU A 227 LYS A 241 1 15 HELIX 14 14 ARG A 251 ALA A 255 5 5 HELIX 15 15 PHE A 256 CYS A 261 1 6 HELIX 16 16 SER A 308 HIS A 325 1 18 HELIX 17 17 GLU A 328 SER A 338 1 11 HELIX 18 18 PRO A 346 PHE A 360 1 15 HELIX 19 19 ILE A 368 GLN A 383 1 16 HELIX 20 20 SER A 386 ARG A 401 1 16 HELIX 21 21 LEU A 402 MET A 405 5 4 HELIX 22 22 ASN A 406 ASN A 423 1 18 HELIX 23 23 SER A 429 SER A 434 5 6 HELIX 24 24 SER A 443 LEU A 459 1 17 HELIX 25 25 TYR A 461 VAL A 469 1 9 HELIX 26 26 PRO A 470 CYS A 477 5 8 HELIX 27 27 GLY A 497 SER A 510 1 14 HELIX 28 28 THR A 513 ASP A 523 1 11 HELIX 29 29 ASN A 540 ALA A 555 1 16 HELIX 30 30 SER A 558 PHE A 569 1 12 HELIX 31 31 PHE A 569 ALA A 577 1 9 HELIX 32 32 SER A 579 ARG A 595 1 17 HELIX 33 33 HIS A 597 THR A 611 1 15 HELIX 34 34 ASP A 615 PHE A 624 1 10 HELIX 35 35 SER A 625 SER A 629 5 5 HELIX 36 36 ARG A 634 LYS A 663 1 30 HELIX 37 37 GLU A 689 VAL A 726 1 38 HELIX 38 38 VAL A 726 ASP A 731 1 6 HELIX 39 39 THR A 737 HIS A 754 1 18 HELIX 40 40 HIS A 754 GLN A 759 1 6 HELIX 41 41 TYR A 761 LEU A 768 1 8 HELIX 42 42 ASP A 775 CYS A 786 1 12 HELIX 43 43 ALA A 787 ALA A 790 5 4 HELIX 44 44 ASN B 29 LYS B 37 1 9 HELIX 45 45 THR B 52 SER B 61 1 10 HELIX 46 46 SER B 90 ILE B 101 1 12 SHEET 1 A 4 ILE B 66 LEU B 73 0 SHEET 2 A 4 ALA B 80 TYR B 88 -1 O PHE B 85 N ILE B 70 SHEET 3 A 4 THR B 41 GLY B 45 -1 N VAL B 44 O CYS B 84 SHEET 4 A 4 ARG B 112 TRP B 115 -1 O ASP B 114 N TYR B 43 SHEET 1 B 2 ARG B 105 LEU B 106 0 SHEET 2 B 2 ARG B 109 ILE B 110 -1 O ARG B 109 N LEU B 106 CISPEP 1 LYS A 221 PRO A 222 0 -1.14 CISPEP 2 LEU A 362 PRO A 363 0 0.36 SITE 1 AC1 6 ARG A 458 GLU A 639 TYR B 57 GLU B 58 SITE 2 AC1 6 SER B 61 HOH B1591 SITE 1 AC2 4 LYS A 607 LYS B 67 LYS B 68 TYR B 89 SITE 1 AC3 3 LYS A 37 LEU A 688 HOH A1725 SITE 1 AC4 3 ILE A 368 SER B 63 GLY B 64 SITE 1 AC5 2 ARG B 26 GLN B 32 SITE 1 AC6 3 HIS A 420 HOH A1717 HOH A1731 SITE 1 AC7 3 LYS B 77 LYS B 78 THR B 79 CRYST1 111.770 111.770 175.730 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008947 0.005166 0.000000 0.00000 SCALE2 0.000000 0.010331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005691 0.00000