PDB Short entry for 1NA8 HEADER SIGNALING PROTEIN, MEMBRANE PROTEIN 27-NOV-02 1NA8 TITLE CRYSTAL STRUCTURE OF ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: APPENDAGE DOMAIN, RESIDUES 494-639 OF SWS Q9UJY5; COMPND 5 SYNONYM: GGA1 APPENDAGE DOMAIN; GOLGI-LOCALIZED, GAMMA EAR- COMPND 6 CONTAINING, ARF-BINDING PROTEIN 1; GAMMA-ADAPTIN RELATED PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS CLATHRIN-ADAPTOR, GGA, APPENDAGE, BETA-SANDWICH, SIGNALING PROTEIN, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.W.LUI,B.M.COLLINS,J.HIRST,A.MOTLEY,C.MILLAR,P.SCHU,D.J.OWEN, AUTHOR 2 M.S.ROBINSON REVDAT 5 16-AUG-23 1NA8 1 SEQADV REVDAT 4 14-FEB-18 1NA8 1 REMARK REVDAT 3 13-JUL-11 1NA8 1 VERSN REVDAT 2 24-FEB-09 1NA8 1 VERSN REVDAT 1 29-JUL-03 1NA8 0 JRNL AUTH W.W.LUI,B.M.COLLINS,J.HIRST,A.MOTLEY,C.MILLAR,P.SCHU, JRNL AUTH 2 D.J.OWEN,M.S.ROBINSON JRNL TITL BINDING PARTNERS FOR THE COOH-TERMINAL APPENDAGE DOMAINS OF JRNL TITL 2 THE GGAS AND GAMMA-ADAPTIN JRNL REF MOL.CELL.BIOL. V. 14 2385 2003 JRNL REFN ISSN 0270-7306 JRNL PMID 12808037 JRNL DOI 10.1091/MBC.E02-11-0735 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 15310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 813 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2327 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 45.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.92000 REMARK 3 B22 (A**2) : 1.92000 REMARK 3 B33 (A**2) : -2.88000 REMARK 3 B12 (A**2) : 0.96000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2393 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2241 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3270 ; 1.718 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5244 ; 0.802 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 3.689 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 442 ;24.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 380 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2574 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 432 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 472 ; 0.239 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2218 ; 0.236 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 212 ; 0.169 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.106 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.269 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.264 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.563 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1500 ; 0.803 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2478 ; 1.483 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 893 ; 2.310 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 792 ; 3.992 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 489 A 639 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6738 34.7644 2.3842 REMARK 3 T TENSOR REMARK 3 T11: 0.0040 T22: 0.2564 REMARK 3 T33: 0.1345 T12: -0.0287 REMARK 3 T13: -0.0085 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.5684 L22: 2.0037 REMARK 3 L33: 6.4186 L12: -0.5898 REMARK 3 L13: 0.3244 L23: 0.6008 REMARK 3 S TENSOR REMARK 3 S11: 0.1190 S12: 0.0032 S13: 0.2046 REMARK 3 S21: -0.1782 S22: 0.0859 S23: -0.3355 REMARK 3 S31: -0.1895 S32: 1.0623 S33: -0.2050 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 495 B 639 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8884 32.6710 33.6510 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.2694 REMARK 3 T33: 0.1004 T12: -0.0471 REMARK 3 T13: -0.0312 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.4160 L22: 2.2218 REMARK 3 L33: 4.2627 L12: -0.0397 REMARK 3 L13: 0.6406 L23: 0.4229 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: -0.3304 S13: 0.3710 REMARK 3 S21: 0.2196 S22: -0.0775 S23: 0.1162 REMARK 3 S31: -0.3454 S32: -0.3197 S33: 0.1399 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1NA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 2001 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 57.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ID 1GYU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, AMMONIUM SULPHATE, PH REMARK 280 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.15000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.57500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.57500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSYMETRIC UNIT CONTAINS A DIMER OF TWO IDENTICAL REMARK 300 CHAINS BUT THIS DIMER IS NOT OBSERVED IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 MET B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 465 HIS B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 HIS B 492 REMARK 465 MET B 493 REMARK 465 GLU B 494 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 117 O HOH B 158 2.13 REMARK 500 ND1 HIS B 528 O HOH B 137 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 142 O HOH B 142 6765 1.27 REMARK 500 NZ LYS B 611 O HOH A 103 3665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 513 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 ASP A 626 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 532 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 499 -44.59 63.83 REMARK 500 ASP A 519 76.03 -165.24 REMARK 500 HIS A 521 17.46 57.96 REMARK 500 LYS A 566 -29.47 -39.33 REMARK 500 ASP A 618 18.66 -152.58 REMARK 500 ASP A 628 5.68 -156.50 REMARK 500 TRP A 636 -38.75 -33.84 REMARK 500 ASP B 519 86.65 -160.83 REMARK 500 GLN B 629 55.43 -116.67 REMARK 500 SER B 638 71.01 -160.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GYU RELATED DB: PDB REMARK 900 STRUCTURE OF THE APPENDAGE DOMAIN OF GAMMA-ADAPTIN REMARK 900 RELATED ID: 1NAF RELATED DB: PDB DBREF 1NA8 A 494 639 UNP Q9UJY5 GGA1_HUMAN 494 639 DBREF 1NA8 B 494 639 UNP Q9UJY5 GGA1_HUMAN 494 639 SEQADV 1NA8 MET A 486 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS A 487 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS A 488 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS A 489 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS A 490 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS A 491 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS A 492 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 MET A 493 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 MET A 578 UNP Q9UJY5 THR 578 CONFLICT SEQADV 1NA8 MET B 486 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS B 487 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS B 488 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS B 489 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS B 490 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS B 491 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 HIS B 492 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 MET B 493 UNP Q9UJY5 EXPRESSION TAG SEQADV 1NA8 MET B 578 UNP Q9UJY5 THR 578 CONFLICT SEQRES 1 A 154 MET HIS HIS HIS HIS HIS HIS MET GLU LEU SER LEU ALA SEQRES 2 A 154 SER ILE THR VAL PRO LEU GLU SER ILE LYS PRO SER ASN SEQRES 3 A 154 ILE LEU PRO VAL THR VAL TYR ASP GLN HIS GLY PHE ARG SEQRES 4 A 154 ILE LEU PHE HIS PHE ALA ARG ASP PRO LEU PRO GLY ARG SEQRES 5 A 154 SER ASP VAL LEU VAL VAL VAL VAL SER MET LEU SER THR SEQRES 6 A 154 ALA PRO GLN PRO ILE ARG ASN ILE VAL PHE GLN SER ALA SEQRES 7 A 154 VAL PRO LYS VAL MET LYS VAL LYS LEU GLN PRO PRO SER SEQRES 8 A 154 GLY MET GLU LEU PRO ALA PHE ASN PRO ILE VAL HIS PRO SEQRES 9 A 154 SER ALA ILE THR GLN VAL LEU LEU LEU ALA ASN PRO GLN SEQRES 10 A 154 LYS GLU LYS VAL ARG LEU ARG TYR LYS LEU THR PHE THR SEQRES 11 A 154 MET GLY ASP GLN THR TYR ASN GLU MET GLY ASP VAL ASP SEQRES 12 A 154 GLN PHE PRO PRO PRO GLU THR TRP GLY SER LEU SEQRES 1 B 154 MET HIS HIS HIS HIS HIS HIS MET GLU LEU SER LEU ALA SEQRES 2 B 154 SER ILE THR VAL PRO LEU GLU SER ILE LYS PRO SER ASN SEQRES 3 B 154 ILE LEU PRO VAL THR VAL TYR ASP GLN HIS GLY PHE ARG SEQRES 4 B 154 ILE LEU PHE HIS PHE ALA ARG ASP PRO LEU PRO GLY ARG SEQRES 5 B 154 SER ASP VAL LEU VAL VAL VAL VAL SER MET LEU SER THR SEQRES 6 B 154 ALA PRO GLN PRO ILE ARG ASN ILE VAL PHE GLN SER ALA SEQRES 7 B 154 VAL PRO LYS VAL MET LYS VAL LYS LEU GLN PRO PRO SER SEQRES 8 B 154 GLY MET GLU LEU PRO ALA PHE ASN PRO ILE VAL HIS PRO SEQRES 9 B 154 SER ALA ILE THR GLN VAL LEU LEU LEU ALA ASN PRO GLN SEQRES 10 B 154 LYS GLU LYS VAL ARG LEU ARG TYR LYS LEU THR PHE THR SEQRES 11 B 154 MET GLY ASP GLN THR TYR ASN GLU MET GLY ASP VAL ASP SEQRES 12 B 154 GLN PHE PRO PRO PRO GLU THR TRP GLY SER LEU FORMUL 3 HOH *172(H2 O) HELIX 1 1 HIS A 489 ALA A 498 1 10 HELIX 2 2 PRO A 503 ILE A 507 5 5 HELIX 3 3 THR A 635 LEU A 639 5 5 HELIX 4 4 PRO B 503 ILE B 507 5 5 HELIX 5 5 PRO B 632 TRP B 636 5 5 SHEET 1 A 5 VAL A 515 GLN A 520 0 SHEET 2 A 5 PHE A 523 ARG A 531 -1 O PHE A 523 N GLN A 520 SHEET 3 A 5 VAL A 540 SER A 549 -1 O SER A 546 N LEU A 526 SHEET 4 A 5 ILE A 592 ALA A 599 -1 O GLN A 594 N VAL A 545 SHEET 5 A 5 LYS A 569 LEU A 572 -1 N LYS A 569 O ALA A 599 SHEET 1 B 3 ILE A 555 ALA A 563 0 SHEET 2 B 3 LEU A 608 MET A 616 -1 O THR A 615 N ARG A 556 SHEET 3 B 3 GLN A 619 VAL A 627 -1 O TYR A 621 N PHE A 614 SHEET 1 C 5 VAL B 515 GLN B 520 0 SHEET 2 C 5 PHE B 523 ALA B 530 -1 O PHE B 527 N VAL B 515 SHEET 3 C 5 VAL B 540 SER B 549 -1 O VAL B 544 N HIS B 528 SHEET 4 C 5 ILE B 592 ALA B 599 -1 O LEU B 596 N VAL B 543 SHEET 5 C 5 LYS B 569 LEU B 572 -1 N LYS B 571 O LEU B 597 SHEET 1 D 3 ILE B 555 ALA B 563 0 SHEET 2 D 3 LEU B 608 MET B 616 -1 O LYS B 611 N GLN B 561 SHEET 3 D 3 GLN B 619 VAL B 627 -1 O VAL B 627 N LEU B 608 CRYST1 65.426 65.426 142.725 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015284 0.008825 0.000000 0.00000 SCALE2 0.000000 0.017649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007007 0.00000