PDB Short entry for 1NAB HEADER DNA 27-NOV-02 1NAB TITLE THE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN A DISACCHARIDE TITLE 2 ANTHRACYCLINE AND THE DNA HEXAMER D(CGATCG) REVEALS TWO DIFFERENT TITLE 3 BINDING SITES INVOLVING TWO DNA DUPLEXES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*GP*AP*TP*CP*G)-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: AUTOMATIC SYNTHESIS KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA EXPDTA X-RAY DIFFRACTION AUTHOR C.TEMPERINI,L.MESSORI,P.ORIOLI,C.DI BUGNO,F.ANIMATI,G.UGHETTO REVDAT 4 14-FEB-24 1NAB 1 REMARK REVDAT 3 08-FEB-12 1NAB 1 REMARK VERSN REVDAT 2 24-FEB-09 1NAB 1 VERSN REVDAT 1 25-FEB-03 1NAB 0 JRNL AUTH C.TEMPERINI,L.MESSORI,P.ORIOLI,C.DI BUGNO,F.ANIMATI, JRNL AUTH 2 G.UGHETTO JRNL TITL THE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN A DISACCHARIDE JRNL TITL 2 ANTHRACYCLINE AND THE DNA HEXAMER D(CGATCG) REVEALS TWO JRNL TITL 3 DIFFERENT BINDING SITES INVOLVING TWO DNA DUPLEXES JRNL REF NUCLEIC ACIDS RES. V. 31 1464 2003 JRNL REFN ISSN 0305-1048 JRNL PMID 12595554 JRNL DOI 10.1093/NAR/GKG245 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.A.FREDERICK,L.D.WILLIAMS,G.UGHETTO,G.A.VAN DER MAREL, REMARK 1 AUTH 2 J.H.VAN BOOM,A.RICH,A.H.WANG REMARK 1 TITL STRUCTURAL COMPARISON OF ANTICANCER DRUG-DNA COMPLEXES: REMARK 1 TITL 2 ADRIAMYCIN AND DAUNOMYCIN REMARK 1 REF BIOCHEMISTRY V. 29 2538 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 69.7 REMARK 3 NUMBER OF REFLECTIONS : 2321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 216 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 2621 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 240 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 18.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.08740 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, CACODYLATE, REMARK 280 SPERMINE HYDROCHLORIDE, MPD, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.51000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 18.90650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 18.90650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.26500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 18.90650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 18.90650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 15.75500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 18.90650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 18.90650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.26500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 18.90650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 18.90650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.75500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 31.51000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 50 O HOH B 52 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 O3' DC A 1 C3' -0.044 REMARK 500 DG A 2 P DG A 2 O5' 0.067 REMARK 500 DG A 2 C2' DG A 2 C1' 0.078 REMARK 500 DG A 2 O3' DG A 2 C3' -0.045 REMARK 500 DG A 2 C6 DG A 2 N1 -0.048 REMARK 500 DG A 2 N7 DG A 2 C8 0.046 REMARK 500 DG A 2 C2 DG A 2 N2 -0.095 REMARK 500 DA A 3 P DA A 3 O5' 0.060 REMARK 500 DA A 3 O4' DA A 3 C1' 0.077 REMARK 500 DA A 3 C8 DA A 3 N9 -0.061 REMARK 500 DA A 3 N9 DA A 3 C4 0.036 REMARK 500 DA A 3 C6 DA A 3 N6 0.048 REMARK 500 DT A 4 P DT A 4 O5' 0.065 REMARK 500 DC A 5 P DC A 5 O5' 0.100 REMARK 500 DC A 5 C2' DC A 5 C1' 0.062 REMARK 500 DC A 5 N3 DC A 5 C4 0.054 REMARK 500 DG A 6 C2' DG A 6 C1' 0.073 REMARK 500 DG A 6 C2 DG A 6 N2 -0.089 REMARK 500 DG B 8 C4' DG B 8 C3' 0.065 REMARK 500 DG B 8 C6 DG B 8 N1 -0.069 REMARK 500 DG B 8 C5 DG B 8 N7 -0.062 REMARK 500 DG B 8 N7 DG B 8 C8 0.041 REMARK 500 DG B 8 C2 DG B 8 N2 -0.083 REMARK 500 DA B 9 C5' DA B 9 C4' -0.080 REMARK 500 DA B 9 C4' DA B 9 C3' 0.073 REMARK 500 DA B 9 C2' DA B 9 C1' 0.073 REMARK 500 DA B 9 C8 DA B 9 N9 -0.053 REMARK 500 DA B 9 N9 DA B 9 C4 0.070 REMARK 500 DT B 10 C4' DT B 10 C3' 0.084 REMARK 500 DC B 11 C2' DC B 11 C1' 0.065 REMARK 500 DC B 11 O4' DC B 11 C1' -0.077 REMARK 500 DC B 11 C4 DC B 11 N4 0.070 REMARK 500 DC B 11 N1 DC B 11 C6 0.045 REMARK 500 DC B 11 N3 DC B 11 C4 0.102 REMARK 500 DG B 12 O3' DG B 12 C3' -0.053 REMARK 500 DG B 12 C6 DG B 12 N1 -0.056 REMARK 500 DG B 12 C2 DG B 12 N2 -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C4' - C3' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC A 1 C5' - C4' - O4' ANGL. DEV. = 11.1 DEGREES REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC A 1 C2 - N3 - C4 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC A 1 N3 - C4 - C5 ANGL. DEV. = -5.1 DEGREES REMARK 500 DC A 1 N1 - C2 - O2 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG A 2 O3' - P - O5' ANGL. DEV. = 12.7 DEGREES REMARK 500 DG A 2 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG A 2 P - O5' - C5' ANGL. DEV. = -12.6 DEGREES REMARK 500 DG A 2 O4' - C4' - C3' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG A 2 C1' - O4' - C4' ANGL. DEV. = 7.3 DEGREES REMARK 500 DG A 2 C4' - C3' - C2' ANGL. DEV. = -4.5 DEGREES REMARK 500 DG A 2 O4' - C1' - C2' ANGL. DEV. = -20.8 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 9.8 DEGREES REMARK 500 DG A 2 C6 - N1 - C2 ANGL. DEV. = -6.9 DEGREES REMARK 500 DG A 2 N1 - C2 - N3 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = 6.9 DEGREES REMARK 500 DG A 2 C5 - N7 - C8 ANGL. DEV. = -3.6 DEGREES REMARK 500 DG A 2 N7 - C8 - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG A 2 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 DG A 2 N3 - C2 - N2 ANGL. DEV. = -10.2 DEGREES REMARK 500 DG A 2 N1 - C6 - O6 ANGL. DEV. = -7.9 DEGREES REMARK 500 DA A 3 C5 - N7 - C8 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA A 3 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT A 4 O3' - P - O5' ANGL. DEV. = 12.7 DEGREES REMARK 500 DT A 4 O5' - P - OP1 ANGL. DEV. = -15.5 DEGREES REMARK 500 DT A 4 O5' - C5' - C4' ANGL. DEV. = -9.8 DEGREES REMARK 500 DT A 4 O4' - C1' - C2' ANGL. DEV. = -8.8 DEGREES REMARK 500 DT A 4 C4 - C5 - C6 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT A 4 C4 - C5 - C7 ANGL. DEV. = 5.4 DEGREES REMARK 500 DT A 4 C6 - C5 - C7 ANGL. DEV. = -9.1 DEGREES REMARK 500 DC A 5 P - O5' - C5' ANGL. DEV. = -13.1 DEGREES REMARK 500 DC A 5 C4' - C3' - C2' ANGL. DEV. = -5.6 DEGREES REMARK 500 DC A 5 C3' - C2' - C1' ANGL. DEV. = -7.0 DEGREES REMARK 500 DC A 5 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC A 5 N1 - C2 - O2 ANGL. DEV. = 6.9 DEGREES REMARK 500 DC A 5 C5 - C4 - N4 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC A 5 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DG A 6 O3' - P - O5' ANGL. DEV. = 12.6 DEGREES REMARK 500 DG A 6 O5' - P - OP1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DG A 6 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DG A 6 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 6 C6 - N1 - C2 ANGL. DEV. = -7.8 DEGREES REMARK 500 DG A 6 N1 - C2 - N3 ANGL. DEV. = 7.1 DEGREES REMARK 500 DG A 6 C2 - N3 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 DG A 6 C5 - C6 - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DG A 6 N3 - C2 - N2 ANGL. DEV. = -7.0 DEGREES REMARK 500 DG A 6 N1 - C6 - O6 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 107 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 44D B 40 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 44D A 41 DBREF 1NAB A 1 6 PDB 1NAB 1NAB 1 6 DBREF 1NAB B 7 12 PDB 1NAB 1NAB 7 12 SEQRES 1 A 6 DC DG DA DT DC DG SEQRES 1 B 6 DC DG DA DT DC DG HET 44D A 41 46 HET 44D B 40 46 HETNAM 44D 7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2- HETNAM 2 44D YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6, HETNAM 3 44D 9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10- HETNAM 4 44D TETRAHYDRO-NAPHTHACENE-5,12-DIONE HETSYN 44D 4'-(O-ALPHA-L-DAUNOSAMINYL)-4-DEMETHOXYDOXORUBICIN FORMUL 3 44D 2(C32 H37 N O13) FORMUL 5 HOH *35(H2 O) SITE 1 AC1 10 DC A 5 DG A 6 HOH A 43 DC B 7 SITE 2 AC1 10 DG B 8 DA B 9 DG B 12 HOH B 46 SITE 3 AC1 10 HOH B 57 HOH B 63 SITE 1 AC2 7 DC A 1 DG A 2 DA A 3 DT A 4 SITE 2 AC2 7 HOH A 50 DC B 11 DG B 12 CRYST1 37.813 37.813 63.020 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015868 0.00000