PDB Short entry for 1NH4 HEADER VIRUS 18-DEC-02 1NH4 TITLE STRUCTURE OF THE COAT PROTEIN IN FD FILAMENTOUS BACTERIOPHAGE TITLE 2 PARTICLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR COAT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE FD; SOURCE 3 ORGANISM_TAXID: 10864; SOURCE 4 STRAIN: FD KEYWDS ALPHA HELIX, HELICAL VIRUS, VIRUS EXPDTA SOLID-STATE NMR NUMMDL 20 AUTHOR A.C.ZERI,M.F.MESLEH,A.A.NEVZOROV,S.J.OPELLA REVDAT 4 23-FEB-22 1NH4 1 REMARK REVDAT 3 24-FEB-09 1NH4 1 VERSN REVDAT 2 18-NOV-03 1NH4 1 JRNL REVDAT 1 06-MAY-03 1NH4 0 JRNL AUTH A.C.ZERI,M.F.MESLEH,A.A.NEVZOROV,S.J.OPELLA JRNL TITL STRUCTURE OF THE COAT PROTEIN IN FD FILAMENTOUS JRNL TITL 2 BACTERIOPHAGE PARTICLES DETERMINED BY SOLID-STATE NMR JRNL TITL 3 SPECTROSCOPY JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 6458 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 12750469 JRNL DOI 10.1073/PNAS.1132059100 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TECMAG LIBRA, SCWRL 2.1 REMARK 3 AUTHORS : TECMAG (TECMAG), DUNBRACK, R. (SCWRL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE FIRST FIVE N-TERMINAL RESIDUES OF THE COAT PROTEIN UNDERGO REMARK 3 ISOTROPIC MOVEMENTS AT ROOM TEMPERATURE AND STRUCTURAL PARAMETERS REMARK 3 CANNOT BE RESOLVED. REMARK 4 REMARK 4 1NH4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017865. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 338 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 15N 50MG/ML VIRUS PARTICLES IN REMARK 210 SUSPENSION, 5MM SODIUM BORATE REMARK 210 BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : PISEMA REMARK 210 SPECTROMETER FIELD STRENGTH : 550 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : HOME-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97 REMARK 210 METHOD USED : SOLID-STATE NMR SPECTROSCOPY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: REMARK 210 THIS STRUCTURE WAS GENERATED FROM THE FIVE-FOLD SYMMETRY OF REMARK 210 PDB ENTRY 1IFI, WHICH HAS THE SYMMETRY THAT RELATES REMARK 210 ONE PENTAMER TO THE NEXT. THIS ONE HAS HAD THE SIDECHAINS REMARK 210 ADDED USING THE PROGRAM SCWRL. REMARK 210 REMARK 210 THE STRUCTURE WAS DETERMINED BY SOLID STATE NUCLEAR MAGNETIC REMARK 210 RESONANCE USING THE WHOLE VIRUS IN SUSPENSION. A MODEL OF A REMARK 210 SECTION OF THE VIRION CAPSID WAS BUILT WITH 20 COPIES OF THE REMARK 210 PROTEIN ARRANGED IN AGREEMENT WITH PREVIOUS STUDIES BY FIBER REMARK 210 DIFFRACTION (MARVIN ET AL., J. MOL. BIOL. 235, 260286 (1994)). REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 5 REMARK 465 SER A 50 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 PRO A 6 N CB CG CD REMARK 470 ALA A 49 C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 32 HB THR A 36 1.06 REMARK 500 HG13 VAL A 33 HD12 ILE A 37 1.14 REMARK 500 O VAL A 33 HB ILE A 37 1.19 REMARK 500 O THR A 19 HG22 ILE A 22 1.22 REMARK 500 O VAL A 31 HB3 ALA A 35 1.34 REMARK 500 O ALA A 16 H GLU A 20 1.44 REMARK 500 O LEU A 41 H PHE A 45 1.45 REMARK 500 O LYS A 43 HB3 SER A 47 1.57 REMARK 500 O ALA A 35 HG12 ILE A 39 1.57 REMARK 500 O VAL A 29 H VAL A 33 1.58 REMARK 500 O ALA A 25 H VAL A 29 1.58 REMARK 500 O PHE A 42 HB THR A 46 1.59 REMARK 500 O GLN A 15 OG1 THR A 19 1.80 REMARK 500 O ILE A 32 CB THR A 36 2.00 REMARK 500 O VAL A 31 CB ALA A 35 2.11 REMARK 500 O LYS A 43 CB SER A 47 2.19 REMARK 500 O PHE A 42 CB THR A 46 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IFI RELATED DB: PDB REMARK 900 FIBER DIFFRACTION STRUCTURE REMARK 999 REMARK 999 AUTHORS INFORMED THAT THE SEQUENCE OF THEIR PROTEIN REMARK 999 IS IDENTICAL TO RESIDUES 27-76 OF THE DATABASE REFERENCE REMARK 999 SEQUENCE PROVIDED IN GENBANK ENTRY 8698956 BUT THAT THE REMARK 999 SOURCE OF THEIR PROTEIN IS DIFFERENT. RESIDUE 21 WAS REMARK 999 MUTATED FROM TYR TO MET. DBREF 1NH4 A 1 50 UNP Q9T0Q9 Q9T0Q9_BPFD 1 50 SEQRES 1 A 50 ALA GLU GLY ASP ASP PRO ALA LYS ALA ALA PHE ASP SER SEQRES 2 A 50 LEU GLN ALA SER ALA THR GLU MET ILE GLY TYR ALA TRP SEQRES 3 A 50 ALA MET VAL VAL VAL ILE VAL GLY ALA THR ILE GLY ILE SEQRES 4 A 50 LYS LEU PHE LYS LYS PHE THR SER LYS ALA SER HELIX 1 1 PRO A 6 ALA A 49 1 44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000