PDB Short entry for 1NK2 HEADER DNA BINDING PROTEIN/DNA 06-MAY-98 1NK2 TITLE VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*GP*TP*GP*TP*CP*AP*AP*GP*TP*GP*GP*CP*TP*GP*T)- COMPND 3 3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*CP*AP*GP*CP*CP*AP*CP*TP*TP*GP*AP*CP*AP*CP*A)- COMPND 8 3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HOMEOBOX PROTEIN VND; COMPND 13 CHAIN: P; COMPND 14 FRAGMENT: HOMEODOMAIN; COMPND 15 SYNONYM: VND/NK-2 HOMEODOMAIN, VENTRAL NERVOUS SYSTEM DEFECTIVE COMPND 16 PROTEIN, HOMEOBOX PROTEIN NK-2; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 7 ORGANISM_COMMON: FRUIT FLY; SOURCE 8 ORGANISM_TAXID: 7227; SOURCE 9 ORGAN: FRUIT; SOURCE 10 GENE: POTENTIAL; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS HOMEODOMAIN, HOMEOBOX, DNA-BINDING PROTEIN, EMBRYONIC DEVELOPMENT, KEYWDS 2 COMPLEX (HOMEODOMAIN-DNA), DNA BINDING PROTEIN-DNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.M.GRUSCHUS,D.H.H.TSAO,L.-H.WANG,M.NIRENBERG,J.A.FERRETTI REVDAT 3 23-FEB-22 1NK2 1 REMARK SEQADV REVDAT 2 24-FEB-09 1NK2 1 VERSN REVDAT 1 23-FEB-99 1NK2 0 JRNL AUTH J.M.GRUSCHUS,D.H.TSAO,L.H.WANG,M.NIRENBERG,J.A.FERRETTI JRNL TITL INTERACTIONS OF THE VND/NK-2 HOMEODOMAIN WITH DNA BY NUCLEAR JRNL TITL 2 MAGNETIC RESONANCE SPECTROSCOPY: BASIS OF BINDING JRNL TITL 3 SPECIFICITY. JRNL REF BIOCHEMISTRY V. 36 5372 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9154919 JRNL DOI 10.1021/BI9620060 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.GRUSCHUS,D.H.TSAO,L.H.WANG,M.NIRENBERG,J.A.FERRETTI REMARK 1 TITL INTERACTIONS OF THE VND/NK-2 HOMEODOMAIN WITH DNA BY NUCLEAR REMARK 1 TITL 2 MAGNETIC RESONANCE SPECTROSCOPY: BASIS OF BINDING REMARK 1 TITL 3 SPECIFICITY REMARK 1 REF BIOCHEMISTRY V. 36 5372 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.H.TSAO,J.M.GRUSCHUS,L.H.WANG,M.NIRENBERG,J.A.FERRETTI REMARK 1 TITL THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE NK-2 REMARK 1 TITL 2 HOMEODOMAIN FROM DROSOPHILA REMARK 1 REF J.MOL.BIOL. V. 251 297 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.H.TSAO,J.M.GRUSCHUS,L.H.WANG,M.NIRENBERG,J.A.FERRETTI REMARK 1 TITL ELONGATION OF HELIX III OF THE NK-2 HOMEODOMAIN UPON BINDING REMARK 1 TITL 2 TO DNA: A SECONDARY STRUCTURE STUDY BY NMR REMARK 1 REF BIOCHEMISTRY V. 33 15053 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHT II 97 AUTHOR : MSI MSI REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NMR REFINE/INSIGHT II 97 REMARK 4 REMARK 4 1NK2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175316. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 60MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-EDITED 3D NOESY H2O; 13C REMARK 210 -EDITED 3D NOESY D2O; 12C- REMARK 210 FILTERED 2D NOESY D2O; 1-1 REMARK 210 SEMISELECTIVE 2D NOESY H2O; REMARK 210 DEUTERIUM EXCHANGE 15N 2D HMQC REMARK 210 H2O; QUANTITATIVE HN-HALPHA J- REMARK 210 COUPLING REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMR REFINE REFINE REMARK 210 METHOD USED : DISTANCE GEOMETRY/ SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS IS THE ENSEMBLE OF 20 STRUCTURES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD13 ILE P 146 HD13 LEU P 148 0.97 REMARK 500 HD21 LEU P 124 HB3 TRP P 156 1.31 REMARK 500 H2'' DA A 7 H5'' DA A 8 1.33 REMARK 500 N1 DA A 8 H3 DT B 25 1.48 REMARK 500 O GLU P 125 H ARG P 129 1.49 REMARK 500 O THR P 121 H GLU P 125 1.49 REMARK 500 O6 DG A 9 H41 DC B 24 1.50 REMARK 500 O LYS P 118 H TYR P 122 1.50 REMARK 500 O ALA P 136 H GLU P 140 1.50 REMARK 500 O THR P 117 H THR P 121 1.50 REMARK 500 O LYS P 154 H GLN P 158 1.50 REMARK 500 O GLU P 140 H SER P 144 1.51 REMARK 500 H1 DG A 4 N3 DC B 29 1.52 REMARK 500 O TYR P 122 H ARG P 126 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DG A 2 C6 DG A 2 N1 0.049 REMARK 500 1 DG A 4 C6 DG A 4 N1 0.048 REMARK 500 1 DC A 6 C4 DC A 6 C5 0.055 REMARK 500 1 DG A 9 C6 DG A 9 N1 0.048 REMARK 500 1 DG A 11 C6 DG A 11 N1 0.073 REMARK 500 1 DG A 12 C6 DG A 12 N1 0.048 REMARK 500 1 DC A 13 C4 DC A 13 C5 0.055 REMARK 500 1 DG A 15 C6 DG A 15 N1 0.048 REMARK 500 1 DC B 18 C4 DC B 18 C5 0.056 REMARK 500 1 DG B 20 C6 DG B 20 N1 0.048 REMARK 500 1 DC B 21 C4 DC B 21 C5 0.055 REMARK 500 1 DC B 22 C4 DC B 22 C5 0.054 REMARK 500 1 DC B 24 C4 DC B 24 C5 0.054 REMARK 500 1 DG B 27 C6 DG B 27 N1 0.055 REMARK 500 1 DC B 29 C4 DC B 29 C5 0.054 REMARK 500 1 DC B 31 C4 DC B 31 C5 0.056 REMARK 500 2 DG A 2 C6 DG A 2 N1 0.048 REMARK 500 2 DG A 4 C6 DG A 4 N1 0.048 REMARK 500 2 DC A 6 C4 DC A 6 C5 0.054 REMARK 500 2 DG A 9 C6 DG A 9 N1 0.049 REMARK 500 2 DG A 11 C6 DG A 11 N1 0.074 REMARK 500 2 DG A 12 C6 DG A 12 N1 0.048 REMARK 500 2 DC A 13 C4 DC A 13 C5 0.055 REMARK 500 2 DG A 15 C6 DG A 15 N1 0.048 REMARK 500 2 DC B 18 C4 DC B 18 C5 0.055 REMARK 500 2 DG B 20 C6 DG B 20 N1 0.048 REMARK 500 2 DC B 21 C4 DC B 21 C5 0.055 REMARK 500 2 DC B 22 C4 DC B 22 C5 0.054 REMARK 500 2 DC B 24 C4 DC B 24 C5 0.054 REMARK 500 2 DG B 27 C6 DG B 27 N1 0.055 REMARK 500 2 DC B 29 C4 DC B 29 C5 0.055 REMARK 500 2 DC B 31 C4 DC B 31 C5 0.055 REMARK 500 3 DG A 2 C6 DG A 2 N1 0.048 REMARK 500 3 DG A 4 C6 DG A 4 N1 0.049 REMARK 500 3 DC A 6 C4 DC A 6 C5 0.055 REMARK 500 3 DG A 9 C6 DG A 9 N1 0.048 REMARK 500 3 DG A 11 C6 DG A 11 N1 0.073 REMARK 500 3 DG A 12 C6 DG A 12 N1 0.048 REMARK 500 3 DC A 13 C4 DC A 13 C5 0.056 REMARK 500 3 DG A 15 C6 DG A 15 N1 0.047 REMARK 500 3 DC B 18 C4 DC B 18 C5 0.055 REMARK 500 3 DG B 20 C6 DG B 20 N1 0.048 REMARK 500 3 DC B 21 C4 DC B 21 C5 0.054 REMARK 500 3 DC B 22 C4 DC B 22 C5 0.054 REMARK 500 3 DC B 24 C4 DC B 24 C5 0.054 REMARK 500 3 DG B 27 C6 DG B 27 N1 0.055 REMARK 500 3 DC B 29 C4 DC B 29 C5 0.054 REMARK 500 3 DC B 31 C4 DC B 31 C5 0.055 REMARK 500 4 DG A 2 C6 DG A 2 N1 0.048 REMARK 500 4 DG A 4 C6 DG A 4 N1 0.049 REMARK 500 REMARK 500 THIS ENTRY HAS 307 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DG A 2 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DG A 4 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DG A 9 N1 - C6 - O6 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DG A 11 N1 - C6 - O6 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 DG A 12 N1 - C6 - O6 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 DG A 15 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DG A 15 N1 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DG B 20 N1 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DC B 21 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DC B 21 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 1 DG B 27 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 ARG P 126 CG - CD - NE ANGL. DEV. = 12.6 DEGREES REMARK 500 1 ARG P 139 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 1 GLU P 170 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 2 DG A 2 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 2 DG A 4 N1 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 DT A 5 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 2 DC A 6 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 DC A 6 C3' - O3' - P ANGL. DEV. = 10.9 DEGREES REMARK 500 2 DA A 7 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DG A 9 N1 - C6 - O6 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 DG A 11 N1 - C6 - O6 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 DG A 12 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 2 DG A 15 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DG A 15 N1 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 DG B 20 N1 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 DC B 21 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 DC B 24 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 2 DG B 27 N1 - C6 - O6 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 ARG P 139 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 2 GLU P 170 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 3 DT A 1 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 3 DG A 2 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 3 DG A 4 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 3 DG A 9 N1 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 DG A 11 N1 - C6 - O6 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 DG A 12 N1 - C6 - O6 ANGL. DEV. = 4.0 DEGREES REMARK 500 3 DG A 15 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 DG A 15 N1 - C6 - O6 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 DA B 17 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 3 DG B 20 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 3 DC B 21 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 DC B 24 C6 - N1 - C2 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 DG B 27 N1 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 ARG P 126 CG - CD - NE ANGL. DEV. = 12.8 DEGREES REMARK 500 3 ARG P 139 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 3 GLU P 170 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 4 DT A 1 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 4 DG A 2 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 4 DG A 4 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 341 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER P 102 136.93 -178.25 REMARK 500 1 ASP P 103 -38.31 170.01 REMARK 500 1 LEU P 105 149.44 170.89 REMARK 500 1 PRO P 106 92.52 -50.28 REMARK 500 1 LYS P 108 54.86 -157.56 REMARK 500 1 VAL P 114 58.85 -107.12 REMARK 500 1 GLU P 138 -71.36 -53.92 REMARK 500 1 ARG P 147 34.70 82.13 REMARK 500 1 VAL P 153 -70.31 -64.53 REMARK 500 1 TYR P 173 173.57 159.01 REMARK 500 2 ASP P 103 23.32 169.96 REMARK 500 2 PRO P 106 92.75 -48.93 REMARK 500 2 LYS P 108 43.90 -98.20 REMARK 500 2 ARG P 110 -155.97 -118.75 REMARK 500 2 VAL P 114 59.09 -107.82 REMARK 500 2 TYR P 133 112.42 -161.60 REMARK 500 2 GLU P 138 -71.41 -54.29 REMARK 500 2 ARG P 147 35.50 82.18 REMARK 500 2 VAL P 153 -70.94 -64.15 REMARK 500 2 TYR P 173 144.66 -29.72 REMARK 500 3 SER P 102 74.04 -106.37 REMARK 500 3 ASP P 103 -38.34 170.15 REMARK 500 3 PRO P 106 91.47 -54.30 REMARK 500 3 LYS P 109 100.36 -58.84 REMARK 500 3 ARG P 110 98.37 71.26 REMARK 500 3 VAL P 114 58.36 -110.20 REMARK 500 3 ARG P 147 35.03 82.44 REMARK 500 3 VAL P 153 -71.88 -64.20 REMARK 500 3 TYR P 173 170.80 155.19 REMARK 500 4 ASP P 103 37.70 169.49 REMARK 500 4 PRO P 106 44.31 -84.96 REMARK 500 4 ARG P 110 50.40 -110.22 REMARK 500 4 VAL P 114 63.95 -102.32 REMARK 500 4 GLU P 138 -71.06 -54.03 REMARK 500 4 ARG P 147 37.21 81.19 REMARK 500 4 VAL P 153 -72.53 -64.38 REMARK 500 4 TYR P 173 173.33 158.85 REMARK 500 5 ASP P 103 -38.33 170.30 REMARK 500 5 PRO P 106 92.49 -50.23 REMARK 500 5 LYS P 108 -67.68 -128.10 REMARK 500 5 ARG P 110 130.06 177.93 REMARK 500 5 VAL P 114 56.86 -97.97 REMARK 500 5 ARG P 147 34.42 82.08 REMARK 500 5 VAL P 153 -71.84 -64.68 REMARK 500 5 TYR P 173 141.27 172.26 REMARK 500 6 SER P 102 89.28 81.83 REMARK 500 6 ASP P 103 -26.08 169.36 REMARK 500 6 PRO P 106 91.52 -54.00 REMARK 500 6 LYS P 111 92.45 -27.68 REMARK 500 6 VAL P 114 64.76 -108.32 REMARK 500 REMARK 500 THIS ENTRY HAS 183 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DG A 2 0.08 SIDE CHAIN REMARK 500 1 DG A 4 0.08 SIDE CHAIN REMARK 500 1 DA A 7 0.06 SIDE CHAIN REMARK 500 1 DG A 9 0.11 SIDE CHAIN REMARK 500 1 DT A 10 0.07 SIDE CHAIN REMARK 500 1 DG A 11 0.08 SIDE CHAIN REMARK 500 1 DG A 12 0.07 SIDE CHAIN REMARK 500 1 DG B 20 0.07 SIDE CHAIN REMARK 500 1 DC B 24 0.17 SIDE CHAIN REMARK 500 1 DT B 25 0.15 SIDE CHAIN REMARK 500 1 DT B 26 0.15 SIDE CHAIN REMARK 500 1 DG B 27 0.06 SIDE CHAIN REMARK 500 1 DA B 28 0.06 SIDE CHAIN REMARK 500 1 DC B 31 0.10 SIDE CHAIN REMARK 500 1 DA B 32 0.07 SIDE CHAIN REMARK 500 1 TYR P 122 0.14 SIDE CHAIN REMARK 500 1 PHE P 128 0.08 SIDE CHAIN REMARK 500 1 PHE P 157 0.12 SIDE CHAIN REMARK 500 1 TYR P 162 0.08 SIDE CHAIN REMARK 500 2 DG A 2 0.07 SIDE CHAIN REMARK 500 2 DT A 3 0.08 SIDE CHAIN REMARK 500 2 DC A 6 0.07 SIDE CHAIN REMARK 500 2 DG A 9 0.08 SIDE CHAIN REMARK 500 2 DG A 11 0.09 SIDE CHAIN REMARK 500 2 DG A 12 0.08 SIDE CHAIN REMARK 500 2 DC B 18 0.14 SIDE CHAIN REMARK 500 2 DG B 20 0.08 SIDE CHAIN REMARK 500 2 DC B 24 0.16 SIDE CHAIN REMARK 500 2 DT B 26 0.13 SIDE CHAIN REMARK 500 2 DG B 27 0.09 SIDE CHAIN REMARK 500 2 DA B 28 0.07 SIDE CHAIN REMARK 500 2 DC B 29 0.13 SIDE CHAIN REMARK 500 2 DA B 32 0.06 SIDE CHAIN REMARK 500 2 TYR P 122 0.13 SIDE CHAIN REMARK 500 2 PHE P 157 0.11 SIDE CHAIN REMARK 500 3 DG A 2 0.08 SIDE CHAIN REMARK 500 3 DT A 3 0.10 SIDE CHAIN REMARK 500 3 DG A 4 0.06 SIDE CHAIN REMARK 500 3 DG A 9 0.07 SIDE CHAIN REMARK 500 3 DT A 10 0.07 SIDE CHAIN REMARK 500 3 DG A 11 0.08 SIDE CHAIN REMARK 500 3 DA B 19 0.08 SIDE CHAIN REMARK 500 3 DG B 20 0.06 SIDE CHAIN REMARK 500 3 DC B 24 0.17 SIDE CHAIN REMARK 500 3 DT B 25 0.07 SIDE CHAIN REMARK 500 3 DT B 26 0.16 SIDE CHAIN REMARK 500 3 DG B 27 0.07 SIDE CHAIN REMARK 500 3 DA B 28 0.06 SIDE CHAIN REMARK 500 3 DA B 32 0.06 SIDE CHAIN REMARK 500 3 TYR P 122 0.12 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 357 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NK3 RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE DBREF 1NK2 P 101 177 UNP P22808 VND_DROME 61 137 DBREF 1NK2 A 1 16 PDB 1NK2 1NK2 1 16 DBREF 1NK2 B 17 32 PDB 1NK2 1NK2 17 32 SEQADV 1NK2 ALA P 101 UNP P22808 GLY 61 CONFLICT SEQRES 1 A 16 DT DG DT DG DT DC DA DA DG DT DG DG DC SEQRES 2 A 16 DT DG DT SEQRES 1 B 16 DA DC DA DG DC DC DA DC DT DT DG DA DC SEQRES 2 B 16 DA DC DA SEQRES 1 P 77 ALA SER ASP GLY LEU PRO ASN LYS LYS ARG LYS ARG ARG SEQRES 2 P 77 VAL LEU PHE THR LYS ALA GLN THR TYR GLU LEU GLU ARG SEQRES 3 P 77 ARG PHE ARG GLN GLN ARG TYR LEU SER ALA PRO GLU ARG SEQRES 4 P 77 GLU HIS LEU ALA SER LEU ILE ARG LEU THR PRO THR GLN SEQRES 5 P 77 VAL LYS ILE TRP PHE GLN ASN HIS ARG TYR LYS THR LYS SEQRES 6 P 77 ARG ALA GLN ASN GLU LYS GLY TYR GLU GLY HIS PRO HELIX 1 I LYS P 118 GLN P 130 1 13 HELIX 2 II ALA P 136 ILE P 146 1 11 HELIX 3 III PRO P 150 GLU P 170 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000