PDB Short entry for 1NL2 HEADER HYDROLASE 06-JAN-03 1NL2 TITLE BOVINE PROTHROMBIN FRAGMENT 1 IN COMPLEX WITH CALCIUM AND TITLE 2 LYSOPHOSPHOTIDYLSERINE CAVEAT 1NL2 LPS A 451 HAS WRONG CHIRALITY AT ATOM C31 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTHROMBIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FRAGMENT 1 (RESIDUES 1-156); COMPND 5 EC: 3.4.21.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HUANG,G.HUANG,B.FURIE,B.SEATON,B.C.FURIE REVDAT 6 15-NOV-23 1NL2 1 REMARK REVDAT 5 16-AUG-23 1NL2 1 HETSYN REVDAT 4 29-JUL-20 1NL2 1 CAVEAT COMPND REMARK SEQADV REVDAT 4 2 1 HETNAM LINK SITE ATOM REVDAT 3 13-JUL-11 1NL2 1 VERSN REVDAT 2 24-FEB-09 1NL2 1 VERSN REVDAT 1 16-SEP-03 1NL2 0 JRNL AUTH M.HUANG,A.C.RIGBY,X.MORELLI,M.A.GRANT,G.HUANG,B.FURIE, JRNL AUTH 2 B.SEATON,B.C.FURIE JRNL TITL STRUCTURAL BASIS OF MEMBRANE BINDING BY GLA DOMAINS OF JRNL TITL 2 VITAMIN K-DEPENDENT PROTEINS. JRNL REF NAT.STRUCT.BIOL. V. 10 751 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 12923575 JRNL DOI 10.1038/NSB971 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 11181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 793 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1622 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 129 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1175 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.58000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : -8.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.430 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 7.680 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 9.000 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 42.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PT.PAR REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000017967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11566 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1NL1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.44700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.47950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.60850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.47950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.44700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.60850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ASN A 101 C8 NAG A 303 1.66 REMARK 500 OD1 ASN A 101 C8 NAG A 303 1.68 REMARK 500 CB ASN A 101 C8 NAG A 303 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 56 O HOH A 541 4567 1.01 REMARK 500 ND2 ASN A 2 O HOH A 558 4467 1.51 REMARK 500 NE ARG A 93 O VAL A 141 3656 1.63 REMARK 500 O HOH A 502 O HOH A 541 4567 1.71 REMARK 500 CB GLN A 146 CL CL A 251 3646 1.92 REMARK 500 ND2 ASN A 2 O HOH A 509 4467 1.93 REMARK 500 CA PRO A 95 O HOH A 549 3656 1.97 REMARK 500 CD ARG A 93 O VAL A 141 3656 1.98 REMARK 500 CE LYS A 97 O GLN A 146 3656 1.98 REMARK 500 CB PRO A 95 O HOH A 549 3656 2.01 REMARK 500 NZ LYS A 97 O GLN A 146 3656 2.05 REMARK 500 OE12 CGU A 27 O HOH A 509 4467 2.05 REMARK 500 O ARG A 93 CG2 VAL A 143 3656 2.08 REMARK 500 O GLY A 69 CB TYR A 94 3646 2.13 REMARK 500 OH TYR A 94 CB VAL A 141 3656 2.14 REMARK 500 CD GLU A 56 O HOH A 541 4567 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 5 -123.60 -52.73 REMARK 500 ALA A 51 35.12 -142.33 REMARK 500 GLU A 112 -125.10 43.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 1 O REMARK 620 2 CGU A 7 OE11 80.5 REMARK 620 3 CGU A 7 OE12 64.0 53.0 REMARK 620 4 CGU A 17 OE21 66.2 71.6 108.7 REMARK 620 5 CGU A 17 OE22 120.8 78.8 131.1 54.7 REMARK 620 6 CGU A 21 OE11 78.0 146.8 133.3 76.6 90.8 REMARK 620 7 HOH A 527 O 78.1 122.4 69.6 139.2 155.4 77.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 2 OD1 REMARK 620 2 CGU A 7 OE11 91.5 REMARK 620 3 CGU A 8 OE22 65.3 81.0 REMARK 620 4 CGU A 17 OE21 129.4 67.7 144.4 REMARK 620 5 CGU A 17 OE11 143.8 94.1 80.4 85.3 REMARK 620 6 CGU A 27 OE22 86.5 128.3 141.0 74.3 116.6 REMARK 620 7 CGU A 27 OE11 87.5 149.1 70.6 133.5 69.9 82.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 8 OE12 REMARK 620 2 CGU A 8 OE21 86.8 REMARK 620 3 CGU A 27 OE12 104.6 96.7 REMARK 620 4 CGU A 30 OE21 155.2 68.4 78.2 REMARK 620 5 CGU A 30 OE22 150.5 112.7 95.1 50.1 REMARK 620 6 HOH A 504 O 83.4 169.5 82.2 121.2 77.8 REMARK 620 7 HOH A 507 O 91.1 82.4 164.2 86.9 71.0 101.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 8 OE21 REMARK 620 2 CGU A 8 OE22 47.7 REMARK 620 3 CGU A 17 OE11 115.1 69.6 REMARK 620 4 CGU A 27 OE11 86.5 65.0 80.4 REMARK 620 5 CGU A 30 OE21 72.7 108.5 156.4 77.8 REMARK 620 6 HOH A 514 O 76.4 117.2 131.7 147.6 70.9 REMARK 620 7 HOH A 519 O 93.4 86.1 63.9 140.5 139.5 68.9 REMARK 620 8 HOH A 522 O 161.9 148.0 83.0 95.1 90.0 93.2 96.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 207 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 15 OE21 REMARK 620 2 CGU A 15 OE12 86.1 REMARK 620 3 CGU A 20 OE21 158.1 78.6 REMARK 620 4 CGU A 20 OE11 85.1 93.5 80.5 REMARK 620 5 HOH A 537 O 109.8 88.3 85.4 165.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 21 OE12 REMARK 620 2 CGU A 21 OE22 77.8 REMARK 620 3 LPS A 451 OT1 92.1 168.5 REMARK 620 4 HOH A 557 O 150.8 129.7 61.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 26 OE12 REMARK 620 2 CGU A 26 OE21 75.5 REMARK 620 3 CGU A 30 OE11 88.2 148.5 REMARK 620 4 CGU A 30 OE22 81.1 71.8 79.3 REMARK 620 N 1 2 3 DBREF 1NL2 A 1 146 UNP P00735 THRB_BOVIN 44 189 SEQADV 1NL2 CGU A 7 UNP P00735 GLU 50 MODIFIED RESIDUE SEQADV 1NL2 CGU A 8 UNP P00735 GLU 51 MODIFIED RESIDUE SEQADV 1NL2 CGU A 15 UNP P00735 GLU 58 MODIFIED RESIDUE SEQADV 1NL2 CGU A 17 UNP P00735 GLU 60 MODIFIED RESIDUE SEQADV 1NL2 CGU A 20 UNP P00735 GLU 63 MODIFIED RESIDUE SEQADV 1NL2 CGU A 21 UNP P00735 GLU 64 MODIFIED RESIDUE SEQADV 1NL2 CGU A 26 UNP P00735 GLU 69 MODIFIED RESIDUE SEQADV 1NL2 CGU A 27 UNP P00735 GLU 70 MODIFIED RESIDUE SEQADV 1NL2 CGU A 30 UNP P00735 GLU 73 MODIFIED RESIDUE SEQADV 1NL2 CGU A 33 UNP P00735 GLU 76 MODIFIED RESIDUE SEQRES 1 A 146 ALA ASN LYS GLY PHE LEU CGU CGU VAL ARG LYS GLY ASN SEQRES 2 A 146 LEU CGU ARG CGU CYS LEU CGU CGU PRO CYS SER ARG CGU SEQRES 3 A 146 CGU ALA PHE CGU ALA LEU CGU SER LEU SER ALA THR ASP SEQRES 4 A 146 ALA PHE TRP ALA LYS TYR THR ALA CYS GLU SER ALA ARG SEQRES 5 A 146 ASN PRO ARG GLU LYS LEU ASN GLU CYS LEU GLU GLY ASN SEQRES 6 A 146 CYS ALA GLU GLY VAL GLY MET ASN TYR ARG GLY ASN VAL SEQRES 7 A 146 SER VAL THR ARG SER GLY ILE GLU CYS GLN LEU TRP ARG SEQRES 8 A 146 SER ARG TYR PRO HIS LYS PRO GLU ILE ASN SER THR THR SEQRES 9 A 146 HIS PRO GLY ALA ASP LEU ARG GLU ASN PHE CYS ARG ASN SEQRES 10 A 146 PRO ASP GLY SER ILE THR GLY PRO TRP CYS TYR THR THR SEQRES 11 A 146 SER PRO THR LEU ARG ARG GLU GLU CYS SER VAL PRO VAL SEQRES 12 A 146 CYS GLY GLN MODRES 1NL2 ASN A 77 ASN GLYCOSYLATION SITE MODRES 1NL2 ASN A 101 ASN GLYCOSYLATION SITE MODRES 1NL2 CGU A 7 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL2 CGU A 8 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL2 CGU A 15 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL2 CGU A 17 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL2 CGU A 20 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL2 CGU A 21 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL2 CGU A 26 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL2 CGU A 27 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL2 CGU A 30 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL2 CGU A 33 GLU GAMMA-CARBOXY-GLUTAMIC ACID HET CGU A 7 12 HET CGU A 8 12 HET CGU A 15 12 HET CGU A 17 12 HET CGU A 20 12 HET CGU A 21 12 HET CGU A 26 12 HET CGU A 27 12 HET CGU A 30 12 HET CGU A 33 12 HET NAG B 1 14 HET NAG B 2 14 HET NAG A 303 14 HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET CA A 206 1 HET CA A 207 1 HET CL A 250 1 HET CL A 251 1 HET CL A 252 1 HET LPS A 451 32 HETNAM CGU GAMMA-CARBOXY-GLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM LPS O-{HYDROXY[((2R)-2-HYDROXY-3-{[(1S)-1- HETNAM 2 LPS HYDROXYPENTADECYL]OXY}PROPYL)OXY]PHOSPHORYL}-L-SERINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN LPS LYSOPHOSPHOTIDYLSERINE FORMUL 1 CGU 10(C6 H9 N O6) FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 4 CA 7(CA 2+) FORMUL 11 CL 3(CL 1-) FORMUL 14 LPS C21 H44 N O9 P FORMUL 15 HOH *60(H2 O) HELIX 1 1 LEU A 6 ARG A 10 5 5 HELIX 2 2 ASN A 13 CYS A 18 1 6 HELIX 3 3 SER A 24 LEU A 32 1 9 HELIX 4 4 SER A 34 ALA A 47 1 14 HELIX 5 5 CYS A 48 ARG A 52 5 5 HELIX 6 6 PRO A 54 GLY A 64 1 11 SHEET 1 A 2 TRP A 126 TYR A 128 0 SHEET 2 A 2 ARG A 136 GLU A 138 -1 O GLU A 137 N CYS A 127 SSBOND 1 CYS A 18 CYS A 23 1555 1555 2.03 SSBOND 2 CYS A 48 CYS A 61 1555 1555 2.03 SSBOND 3 CYS A 66 CYS A 144 1555 1555 2.03 SSBOND 4 CYS A 87 CYS A 127 1555 1555 2.03 SSBOND 5 CYS A 115 CYS A 139 1555 1555 2.03 LINK C LEU A 6 N CGU A 7 1555 1555 1.33 LINK C CGU A 7 N CGU A 8 1555 1555 1.33 LINK C CGU A 8 N VAL A 9 1555 1555 1.33 LINK C LEU A 14 N CGU A 15 1555 1555 1.33 LINK C CGU A 15 N ARG A 16 1555 1555 1.33 LINK C ARG A 16 N CGU A 17 1555 1555 1.33 LINK C CGU A 17 N CYS A 18 1555 1555 1.33 LINK C LEU A 19 N CGU A 20 1555 1555 1.33 LINK C CGU A 20 N CGU A 21 1555 1555 1.33 LINK C CGU A 21 N PRO A 22 1555 1555 1.34 LINK C ARG A 25 N CGU A 26 1555 1555 1.33 LINK C CGU A 26 N CGU A 27 1555 1555 1.33 LINK C CGU A 27 N ALA A 28 1555 1555 1.33 LINK C PHE A 29 N CGU A 30 1555 1555 1.33 LINK C CGU A 30 N ALA A 31 1555 1555 1.33 LINK C LEU A 32 N CGU A 33 1555 1555 1.33 LINK C CGU A 33 N SER A 34 1555 1555 1.33 LINK ND2 ASN A 77 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 101 C1 NAG A 303 1555 1555 1.48 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.38 LINK O ALA A 1 CA CA A 205 1555 1555 2.35 LINK OD1 ASN A 2 CA CA A 204 1555 1555 2.41 LINK OE11 CGU A 7 CA CA A 204 1555 1555 2.61 LINK OE11 CGU A 7 CA CA A 205 1555 1555 2.49 LINK OE12 CGU A 7 CA CA A 205 1555 1555 2.46 LINK OE12 CGU A 8 CA CA A 202 1555 1555 2.45 LINK OE21 CGU A 8 CA CA A 202 1555 1555 2.58 LINK OE21 CGU A 8 CA CA A 203 1555 1555 2.27 LINK OE22 CGU A 8 CA CA A 203 1555 1555 2.95 LINK OE22 CGU A 8 CA CA A 204 1555 1555 2.26 LINK OE21 CGU A 15 CA CA A 207 1555 1555 2.05 LINK OE12 CGU A 15 CA CA A 207 1555 1555 2.37 LINK OE11 CGU A 17 CA CA A 203 1555 1555 2.41 LINK OE21 CGU A 17 CA CA A 204 1555 1555 2.37 LINK OE11 CGU A 17 CA CA A 204 1555 1555 2.53 LINK OE21 CGU A 17 CA CA A 205 1555 1555 2.26 LINK OE22 CGU A 17 CA CA A 205 1555 1555 2.51 LINK OE21 CGU A 20 CA CA A 207 1555 1555 2.39 LINK OE11 CGU A 20 CA CA A 207 1555 1555 2.27 LINK OE11 CGU A 21 CA CA A 205 1555 1555 2.50 LINK OE12 CGU A 21 CA CA A 206 1555 1555 2.42 LINK OE22 CGU A 21 CA CA A 206 1555 1555 2.42 LINK OE12 CGU A 26 CA CA A 201 1555 1555 2.42 LINK OE21 CGU A 26 CA CA A 201 1555 1555 2.39 LINK OE12 CGU A 27 CA CA A 202 1555 1555 2.45 LINK OE11 CGU A 27 CA CA A 203 1555 1555 2.11 LINK OE22 CGU A 27 CA CA A 204 1555 1555 2.34 LINK OE11 CGU A 27 CA CA A 204 1555 1555 2.59 LINK OE11 CGU A 30 CA CA A 201 1555 1555 2.17 LINK OE22 CGU A 30 CA CA A 201 1555 1555 2.50 LINK OE21 CGU A 30 CA CA A 202 1555 1555 2.45 LINK OE22 CGU A 30 CA CA A 202 1555 1555 2.71 LINK OE21 CGU A 30 CA CA A 203 1555 1555 2.50 LINK CA CA A 202 O HOH A 504 1555 1555 2.48 LINK CA CA A 202 O HOH A 507 1555 1555 2.05 LINK CA CA A 203 O HOH A 514 1555 1555 2.14 LINK CA CA A 203 O HOH A 519 1555 1555 2.45 LINK CA CA A 203 O HOH A 522 1555 1555 2.58 LINK CA CA A 205 O HOH A 527 1555 1555 2.43 LINK CA CA A 206 OT1 LPS A 451 1555 1555 2.20 LINK CA CA A 206 O HOH A 557 1555 1555 2.72 LINK CA CA A 207 O HOH A 537 1555 1555 2.76 CISPEP 1 ASN A 53 PRO A 54 0 -0.17 CISPEP 2 TYR A 94 PRO A 95 0 0.01 CRYST1 38.894 53.217 128.959 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007754 0.00000