PDB Short entry for 1NM0 HEADER OXIDOREDUCTASE 08-JAN-03 1NM0 TITLE PROTEUS MIRABILIS CATALASE IN COMPLEX WITH FORMIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATALASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS MIRABILIS; SOURCE 3 ORGANISM_TAXID: 584 KEYWDS ALPHA+BETA, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ANDREOLETTI,A.PERNOUD,P.GOUET,H.M.JOUVE REVDAT 5 16-AUG-23 1NM0 1 REMARK SEQADV LINK REVDAT 4 16-NOV-11 1NM0 1 HETATM REVDAT 3 13-JUL-11 1NM0 1 VERSN REVDAT 2 24-FEB-09 1NM0 1 VERSN REVDAT 1 20-JAN-04 1NM0 0 JRNL AUTH P.ANDREOLETTI,A.PERNOUD,G.SAINZ,P.GOUET,H.M.JOUVE JRNL TITL STRUCTURAL STUDIES OF PROTEUS MIRABILIS CATALASE IN ITS JRNL TITL 2 GROUND STATE, OXIDIZED STATE AND IN COMPLEX WITH FORMIC JRNL TITL 3 ACID. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 2163 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 14646074 JRNL DOI 10.1107/S0907444903019620 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 39356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6173 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 350 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3870 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.00000 REMARK 3 B22 (A**2) : 6.00000 REMARK 3 B33 (A**2) : -12.01000 REMARK 3 B12 (A**2) : 1.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.340 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.080 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.680 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.770 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.460 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 10.92 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PARAM19.CHROMO REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39651 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ID 1M85 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 166.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.33333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 166.66667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.33333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 166.66667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 83.33333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 166.66667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 83.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 49260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -457.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 110.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 110.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 490 LIES ON A SPECIAL POSITION. REMARK 375 O4 SO4 A 490 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 562 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 714 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 480 REMARK 465 LYS A 481 REMARK 465 ASP A 482 REMARK 465 ALA A 483 REMARK 465 LYS A 484 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 94 -160.67 -100.13 REMARK 500 VAL A 95 -56.99 -127.52 REMARK 500 LYS A 148 -147.35 -101.53 REMARK 500 SER A 196 -61.71 73.14 REMARK 500 TYR A 199 -166.20 -117.35 REMARK 500 PRO A 272 22.06 -77.46 REMARK 500 VAL A 292 -57.47 -132.79 REMARK 500 ASN A 348 43.50 -101.28 REMARK 500 LYS A 358 -78.24 -79.35 REMARK 500 PHE A 361 -177.17 -59.82 REMARK 500 HIS A 362 -94.36 -154.77 REMARK 500 ASN A 363 121.25 75.79 REMARK 500 ASP A 367 -135.82 57.49 REMARK 500 ASN A 375 -177.17 83.02 REMARK 500 ASP A 408 172.76 178.31 REMARK 500 HIS A 464 130.83 -171.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 491 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 337 OH REMARK 620 2 HEM A 491 NA 94.0 REMARK 620 3 HEM A 491 NB 94.0 90.5 REMARK 620 4 HEM A 491 NC 88.9 177.2 89.4 REMARK 620 5 HEM A 491 ND 84.4 90.6 178.1 89.6 REMARK 620 6 FMT A 492 O1 163.0 101.5 92.7 75.6 88.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 489 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 490 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 493 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M85 RELATED DB: PDB REMARK 900 STRUCTURE OF PROTEUS MIRABILIS CATALASE FOR THE NATIVE FORM REMARK 900 RELATED ID: 1MQF RELATED DB: PDB REMARK 900 COMPOUND I FROM PROTEUS MIRABILIS CATALASE REMARK 900 RELATED ID: 2CAG RELATED DB: PDB REMARK 900 CATALASE COMPOUND II REMARK 900 RELATED ID: 2CAH RELATED DB: PDB REMARK 900 STRUCTURE OF PROTEUS MIRABILIS PR CATALASE FOR THE NATIVE FORM (E- REMARK 900 FE(III)) COMPLEXED WITH NADPH REMARK 900 RELATED ID: 1E93 RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE AND BIOCHEMICAL PROPERTIES OF A REMARK 900 RECOMBINANT CATALASE DEPLETED IN IRON DBREF 1NM0 A 1 484 UNP P42321 CATA_PROMI 1 484 SEQADV 1NM0 OMT A 53 UNP P42321 MET 53 MODIFIED RESIDUE SEQRES 1 A 484 MET GLU LYS LYS LYS LEU THR THR ALA ALA GLY ALA PRO SEQRES 2 A 484 VAL VAL ASP ASN ASN ASN VAL ILE THR ALA GLY PRO ARG SEQRES 3 A 484 GLY PRO MET LEU LEU GLN ASP VAL TRP PHE LEU GLU LYS SEQRES 4 A 484 LEU ALA HIS PHE ASP ARG GLU VAL ILE PRO GLU ARG ARG SEQRES 5 A 484 OMT HIS ALA LYS GLY SER GLY ALA PHE GLY THR PHE THR SEQRES 6 A 484 VAL THR HIS ASP ILE THR LYS TYR THR ARG ALA LYS ILE SEQRES 7 A 484 PHE SER GLU VAL GLY LYS LYS THR GLU MET PHE ALA ARG SEQRES 8 A 484 PHE SER THR VAL ALA GLY GLU ARG GLY ALA ALA ASP ALA SEQRES 9 A 484 GLU ARG ASP ILE ARG GLY PHE ALA LEU LYS PHE TYR THR SEQRES 10 A 484 GLU GLU GLY ASN TRP ASP MET VAL GLY ASN ASN THR PRO SEQRES 11 A 484 VAL PHE TYR LEU ARG ASP PRO LEU LYS PHE PRO ASP LEU SEQRES 12 A 484 ASN HIS ILE VAL LYS ARG ASP PRO ARG THR ASN MET ARG SEQRES 13 A 484 ASN MET ALA TYR LYS TRP ASP PHE PHE SER HIS LEU PRO SEQRES 14 A 484 GLU SER LEU HIS GLN LEU THR ILE ASP MET SER ASP ARG SEQRES 15 A 484 GLY LEU PRO LEU SER TYR ARG PHE VAL HIS GLY PHE GLY SEQRES 16 A 484 SER HIS THR TYR SER PHE ILE ASN LYS ASP ASN GLU ARG SEQRES 17 A 484 PHE TRP VAL LYS PHE HIS PHE ARG CYS GLN GLN GLY ILE SEQRES 18 A 484 LYS ASN LEU MET ASP ASP GLU ALA GLU ALA LEU VAL GLY SEQRES 19 A 484 LYS ASP ARG GLU SER SER GLN ARG ASP LEU PHE GLU ALA SEQRES 20 A 484 ILE GLU ARG GLY ASP TYR PRO ARG TRP LYS LEU GLN ILE SEQRES 21 A 484 GLN ILE MET PRO GLU LYS GLU ALA SER THR VAL PRO TYR SEQRES 22 A 484 ASN PRO PHE ASP LEU THR LYS VAL TRP PRO HIS ALA ASP SEQRES 23 A 484 TYR PRO LEU MET ASP VAL GLY TYR PHE GLU LEU ASN ARG SEQRES 24 A 484 ASN PRO ASP ASN TYR PHE SER ASP VAL GLU GLN ALA ALA SEQRES 25 A 484 PHE SER PRO ALA ASN ILE VAL PRO GLY ILE SER PHE SER SEQRES 26 A 484 PRO ASP LYS MET LEU GLN GLY ARG LEU PHE SER TYR GLY SEQRES 27 A 484 ASP ALA HIS ARG TYR ARG LEU GLY VAL ASN HIS HIS GLN SEQRES 28 A 484 ILE PRO VAL ASN ALA PRO LYS CYS PRO PHE HIS ASN TYR SEQRES 29 A 484 HIS ARG ASP GLY ALA MET ARG VAL ASP GLY ASN SER GLY SEQRES 30 A 484 ASN GLY ILE THR TYR GLU PRO ASN SER GLY GLY VAL PHE SEQRES 31 A 484 GLN GLU GLN PRO ASP PHE LYS GLU PRO PRO LEU SER ILE SEQRES 32 A 484 GLU GLY ALA ALA ASP HIS TRP ASN HIS ARG GLU ASP GLU SEQRES 33 A 484 ASP TYR PHE SER GLN PRO ARG ALA LEU TYR GLU LEU LEU SEQRES 34 A 484 SER ASP ASP GLU HIS GLN ARG MET PHE ALA ARG ILE ALA SEQRES 35 A 484 GLY GLU LEU SER GLN ALA SER LYS GLU THR GLN GLN ARG SEQRES 36 A 484 GLN ILE ASP LEU PHE THR LYS VAL HIS PRO GLU TYR GLY SEQRES 37 A 484 ALA GLY VAL GLU LYS ALA ILE LYS VAL LEU GLU GLY LYS SEQRES 38 A 484 ASP ALA LYS MODRES 1NM0 OMT A 53 MET S-DIOXYMETHIONINE HET OMT A 53 10 HET SO4 A 485 5 HET SO4 A 486 5 HET SO4 A 487 5 HET SO4 A 488 5 HET SO4 A 489 5 HET SO4 A 490 5 HET HEM A 491 43 HET FMT A 492 3 HET GOL A 493 6 HETNAM OMT S-DIOXYMETHIONINE HETNAM SO4 SULFATE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 OMT C5 H11 N O4 S FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 HEM C34 H32 FE N4 O4 FORMUL 9 FMT C H2 O2 FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *471(H2 O) HELIX 1 1 ASP A 33 ASP A 44 1 12 HELIX 2 2 ALA A 76 SER A 80 5 5 HELIX 3 3 ASP A 136 LEU A 138 5 3 HELIX 4 4 LYS A 139 LYS A 148 1 10 HELIX 5 5 ASN A 157 HIS A 167 1 11 HELIX 6 6 LEU A 168 GLU A 170 5 3 HELIX 7 7 SER A 171 SER A 180 1 10 HELIX 8 8 ASP A 181 LEU A 184 5 4 HELIX 9 9 SER A 187 VAL A 191 5 5 HELIX 10 10 MET A 225 ASP A 236 1 12 HELIX 11 11 GLU A 238 ARG A 250 1 13 HELIX 12 12 LYS A 266 THR A 270 5 5 HELIX 13 13 ASN A 303 VAL A 308 1 6 HELIX 14 14 ASP A 327 GLY A 346 1 20 HELIX 15 15 ASN A 348 ILE A 352 5 5 HELIX 16 16 GLN A 393 LYS A 397 5 5 HELIX 17 17 ASN A 411 ASP A 415 5 5 HELIX 18 18 PHE A 419 LEU A 429 1 11 HELIX 19 19 SER A 430 SER A 446 1 17 HELIX 20 20 SER A 449 HIS A 464 1 16 HELIX 21 21 HIS A 464 GLU A 479 1 16 SHEET 1 A11 ILE A 322 SER A 323 0 SHEET 2 A11 TYR A 199 ILE A 202 -1 O SER A 200 N SER A 323 SHEET 3 A11 ARG A 208 CYS A 217 -1 O PHE A 209 N PHE A 201 SHEET 4 A11 ARG A 255 PRO A 264 -1 O LYS A 257 N ARG A 216 SHEET 5 A11 MET A 290 ARG A 299 -1 N MET A 290 O ILE A 260 SHEET 6 A11 GLY A 57 VAL A 66 -1 N PHE A 61 O ARG A 299 SHEET 7 A11 LYS A 85 SER A 93 -1 O THR A 86 N PHE A 64 SHEET 8 A11 GLY A 110 THR A 117 -1 N GLY A 110 O SER A 93 SHEET 9 A11 GLY A 120 ASN A 127 -1 O GLY A 120 N THR A 117 SHEET 10 A11 GLY A 193 PHE A 194 -1 N PHE A 194 O ASN A 127 SHEET 11 A11 ARG A 208 CYS A 217 -1 N PHE A 215 O GLY A 193 LINK C ARG A 52 N OMT A 53 1555 1555 1.33 LINK C OMT A 53 N HIS A 54 1555 1555 1.34 LINK OH TYR A 337 FE HEM A 491 1555 1555 1.99 LINK FE HEM A 491 O1 FMT A 492 1555 1555 2.85 CISPEP 1 GLU A 383 PRO A 384 0 0.28 SITE 1 AC1 4 ARG A 182 HIS A 192 ARG A 216 HOH A 860 SITE 1 AC2 4 ARG A 423 HOH A 553 HOH A 843 HOH A 905 SITE 1 AC3 3 SER A 430 ASP A 432 ARG A 436 SITE 1 AC4 3 ARG A 182 ASN A 223 HOH A 841 SITE 1 AC5 2 ARG A 216 GLN A 218 SITE 1 AC6 4 ARG A 45 ARG A 342 TYR A 343 HOH A 661 SITE 1 AC7 23 ASP A 44 ARG A 51 HIS A 54 ARG A 91 SITE 2 AC7 23 VAL A 125 GLY A 126 ASN A 127 PRO A 137 SITE 3 AC7 23 PHE A 140 GLY A 195 SER A 196 HIS A 197 SITE 4 AC7 23 PHE A 313 MET A 329 ARG A 333 SER A 336 SITE 5 AC7 23 TYR A 337 HIS A 341 ARG A 344 FMT A 492 SITE 6 AC7 23 HOH A 494 HOH A 642 HOH A 646 SITE 1 AC8 6 OMT A 53 HIS A 54 ASN A 127 PHE A 132 SITE 2 AC8 6 PHE A 140 HEM A 491 SITE 1 AC9 8 GLU A 38 HIS A 42 ARG A 342 HIS A 349 SITE 2 AC9 8 HOH A 593 HOH A 625 HOH A 696 HOH A 697 CRYST1 110.000 110.000 250.000 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009091 0.005249 0.000000 0.00000 SCALE2 0.000000 0.010497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004000 0.00000