PDB Short entry for 1NMY HEADER TRANSFERASE 12-JAN-03 1NMY TITLE CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH FLTMP AND APPNHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIMILAR TO THYMIDYLATE KINASE (DTMP KINASE); COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.4.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, THYMIDYLATE KINASE, P-LOOP, FLUOROTHYMIDINE EXPDTA X-RAY DIFFRACTION AUTHOR N.OSTERMANN,D.SEGURA-PENA,C.MEIER,T.VEIT,M.MONNERJAHN,M.KONRAD, AUTHOR 2 A.LAVIE REVDAT 6 14-FEB-24 1NMY 1 REMARK REVDAT 5 27-OCT-21 1NMY 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1NMY 1 REMARK REVDAT 3 13-JUL-11 1NMY 1 VERSN REVDAT 2 24-FEB-09 1NMY 1 VERSN REVDAT 1 18-MAR-03 1NMY 0 JRNL AUTH N.OSTERMANN,D.SEGURA-PENA,C.MEIER,T.VEIT,M.MONNERJAHN, JRNL AUTH 2 M.KONRAD,A.LAVIE JRNL TITL STRUCTURES OF HUMAN THYMIDYLATE KINASE IN COMPLEX WITH JRNL TITL 2 PRODRUGS: IMPLICATIONS FOR THE STRUCTURE-BASED DESIGN OF JRNL TITL 3 NOVEL COMPOUNDS JRNL REF BIOCHEMISTRY V. 42 2568 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12614151 JRNL DOI 10.1021/BI027302T REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1641 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000018019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9076 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34069 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FOURIER METHODS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% PEG 3350, 100 MM TRIS/HCL, PH REMARK 280 8.0, 5% FILTERED DEAD SEA WATER, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.89050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.62900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.62900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.33575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.62900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.62900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.44525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.62900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.62900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.33575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.62900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.62900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 12.44525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 24.89050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 101.25800 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 101.25800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 24.89050 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 HIS A 148 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 512 O HOH A 751 1.99 REMARK 500 OP1 FDM A 301 O HOH A 762 2.03 REMARK 500 O HOH A 652 O HOH A 704 2.15 REMARK 500 O1G ANP A 303 O HOH A 755 2.19 REMARK 500 O HOH A 678 O HOH A 849 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 4 O HOH A 795 3554 1.78 REMARK 500 OE2 GLU A 185 O HOH A 789 4455 1.85 REMARK 500 O HOH A 684 O HOH A 684 8665 2.07 REMARK 500 O HOH A 767 O HOH A 792 3554 2.11 REMARK 500 O HOH A 520 O HOH A 836 8665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 16 -6.99 95.86 REMARK 500 ARG A 97 147.77 76.14 REMARK 500 TYR A 98 -145.52 -149.98 REMARK 500 ARG A 143 44.08 -105.55 REMARK 500 TYR A 151 -5.12 76.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 20 OG REMARK 620 2 ADP A 302 O2B 92.0 REMARK 620 3 ANP A 303 O2B 88.6 7.2 REMARK 620 4 ANP A 303 O2G 171.0 83.1 87.3 REMARK 620 5 HOH A 504 O 84.6 93.7 99.6 88.2 REMARK 620 6 HOH A 505 O 87.6 179.0 171.9 97.4 87.2 REMARK 620 7 HOH A 506 O 90.0 92.0 85.7 97.6 172.3 87.1 REMARK 620 8 HOH A 507 O 170.7 97.2 100.5 16.5 95.7 83.1 88.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 501 O REMARK 620 2 HOH A 501 O 168.5 REMARK 620 3 HOH A 502 O 95.6 78.0 REMARK 620 4 HOH A 502 O 90.8 98.0 84.1 REMARK 620 5 HOH A 503 O 87.4 82.6 85.4 169.1 REMARK 620 6 HOH A 503 O 96.1 89.3 166.3 103.0 88.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 DBREF 1NMY A 4 212 UNP P23919 DTYMK_HUMAN 4 216 SEQADV 1NMY ALA A 200 UNP P23919 ARG 204 ENGINEERED MUTATION SEQRES 1 A 209 ARG ARG GLY ALA LEU ILE VAL LEU GLU GLY VAL ASP ARG SEQRES 2 A 209 ALA GLY LYS SER THR GLN SER ARG LYS LEU VAL GLU ALA SEQRES 3 A 209 LEU CYS ALA ALA GLY HIS ARG ALA GLU LEU LEU ARG PHE SEQRES 4 A 209 PRO GLU ARG SER THR GLU ILE GLY LYS LEU LEU SER SER SEQRES 5 A 209 TYR LEU GLN LYS LYS SER ASP VAL GLU ASP HIS SER VAL SEQRES 6 A 209 HIS LEU LEU PHE SER ALA ASN ARG TRP GLU GLN VAL PRO SEQRES 7 A 209 LEU ILE LYS GLU LYS LEU SER GLN GLY VAL THR LEU VAL SEQRES 8 A 209 VAL ASP ARG TYR ALA PHE SER GLY VAL ALA PHE THR GLY SEQRES 9 A 209 ALA LYS GLU ASN PHE SER LEU ASP TRP CYS LYS GLN PRO SEQRES 10 A 209 ASP VAL GLY LEU PRO LYS PRO ASP LEU VAL LEU PHE LEU SEQRES 11 A 209 GLN LEU GLN LEU ALA ASP ALA ALA LYS ARG GLY ALA PHE SEQRES 12 A 209 GLY HIS GLU ARG TYR GLU ASN GLY ALA PHE GLN GLU ARG SEQRES 13 A 209 ALA LEU ARG CYS PHE HIS GLN LEU MET LYS ASP THR THR SEQRES 14 A 209 LEU ASN TRP LYS MET VAL ASP ALA SER LYS SER ILE GLU SEQRES 15 A 209 ALA VAL HIS GLU ASP ILE ARG VAL LEU SER GLU ASP ALA SEQRES 16 A 209 ILE ALA THR ALA THR GLU LYS PRO LEU GLY GLU LEU TRP SEQRES 17 A 209 LYS HET MG A 401 1 HET MG A 402 1 HET FDM A 301 42 HET ADP A 302 27 HET ANP A 303 31 HETNAM MG MAGNESIUM ION HETNAM FDM 3'-FLUORO-3'-DEOXYTHYMIDINE MONOPHOSPHATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETSYN FDM PHOSPHORIC ACID MONO-[3-FLUORO-5-(5-METHYL-2,4-DIOXO-3, HETSYN 2 FDM 4-DIHYDRO-2H-PYRIMIDIN-1-YL)-TETRAHYRO-FURAN-2- HETSYN 3 FDM YLMETHYL] ESTER FORMUL 2 MG 2(MG 2+) FORMUL 4 FDM C10 H14 F N2 O7 P FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 ANP C10 H17 N6 O12 P3 FORMUL 7 HOH *353(H2 O) HELIX 1 1 GLY A 18 ALA A 33 1 16 HELIX 2 2 THR A 47 GLN A 58 1 12 HELIX 3 3 GLU A 64 GLU A 78 1 15 HELIX 4 4 GLN A 79 GLN A 89 1 11 HELIX 5 5 TYR A 98 ALA A 108 1 11 HELIX 6 6 SER A 113 GLN A 119 1 7 HELIX 7 7 PRO A 120 VAL A 122 5 3 HELIX 8 8 GLN A 136 LYS A 142 1 7 HELIX 9 9 ASN A 153 MET A 168 1 16 HELIX 10 10 SER A 183 THR A 203 1 21 SHEET 1 A 5 ALA A 37 ARG A 41 0 SHEET 2 A 5 THR A 92 ASP A 96 1 O VAL A 94 N LEU A 40 SHEET 3 A 5 LEU A 8 GLY A 13 1 N ILE A 9 O LEU A 93 SHEET 4 A 5 LEU A 129 GLN A 134 1 O LEU A 131 N VAL A 10 SHEET 5 A 5 TRP A 175 ASP A 179 1 O VAL A 178 N PHE A 132 LINK OG SER A 20 MG MG A 401 1555 1555 2.15 LINK O2BAADP A 302 MG MG A 401 1555 1555 2.04 LINK O2BBANP A 303 MG MG A 401 1555 1555 1.96 LINK O2GBANP A 303 MG MG A 401 1555 1555 2.07 LINK MG MG A 401 O HOH A 504 1555 1555 2.13 LINK MG MG A 401 O HOH A 505 1555 1555 2.11 LINK MG MG A 401 O HOH A 506 1555 1555 2.07 LINK MG MG A 401 O HOH A 507 1555 1555 2.07 LINK MG MG A 402 O HOH A 501 1555 1555 2.05 LINK MG MG A 402 O HOH A 501 1555 8665 2.27 LINK MG MG A 402 O HOH A 502 1555 1555 2.22 LINK MG MG A 402 O HOH A 502 1555 8665 1.91 LINK MG MG A 402 O HOH A 503 1555 1555 2.29 LINK MG MG A 402 O HOH A 503 1555 8665 1.99 CISPEP 1 PHE A 42 PRO A 43 0 -1.09 SITE 1 AC1 21 GLY A 18 LYS A 19 SER A 20 THR A 21 SITE 2 AC1 21 ARG A 143 LYS A 182 ILE A 184 MG A 401 SITE 3 AC1 21 HOH A 504 HOH A 506 HOH A 507 HOH A 508 SITE 4 AC1 21 HOH A 537 HOH A 566 HOH A 573 HOH A 583 SITE 5 AC1 21 HOH A 592 HOH A 607 HOH A 624 HOH A 651 SITE 6 AC1 21 HOH A 674 SITE 1 AC2 28 ASP A 15 ARG A 16 GLY A 18 LYS A 19 SITE 2 AC2 28 SER A 20 THR A 21 ARG A 97 ARG A 143 SITE 3 AC2 28 LYS A 182 ILE A 184 MG A 401 HOH A 504 SITE 4 AC2 28 HOH A 505 HOH A 506 HOH A 512 HOH A 514 SITE 5 AC2 28 HOH A 537 HOH A 566 HOH A 573 HOH A 583 SITE 6 AC2 28 HOH A 592 HOH A 607 HOH A 624 HOH A 651 SITE 7 AC2 28 HOH A 674 HOH A 682 HOH A 751 HOH A 755 SITE 1 AC3 22 PHE A 42 PRO A 43 ARG A 45 PHE A 72 SITE 2 AC3 22 ARG A 76 ARG A 97 GLY A 102 PHE A 105 SITE 3 AC3 22 TYR A 151 HOH A 504 HOH A 505 HOH A 507 SITE 4 AC3 22 HOH A 512 HOH A 528 HOH A 542 HOH A 553 SITE 5 AC3 22 HOH A 555 HOH A 636 HOH A 682 HOH A 751 SITE 6 AC3 22 HOH A 761 HOH A 762 SITE 1 AC4 7 SER A 20 ADP A 302 ANP A 303 HOH A 504 SITE 2 AC4 7 HOH A 505 HOH A 506 HOH A 507 SITE 1 AC5 3 HOH A 501 HOH A 502 HOH A 503 CRYST1 101.258 101.258 49.781 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009876 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020088 0.00000