PDB Short entry for 1NPE HEADER STRUCTURAL PROTEIN 17-JAN-03 1NPE TITLE CRYSTAL STRUCTURE OF NIDOGEN/LAMININ COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIDOGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: G3 YWTD DOMAIN, SEQUENCE DATABASE RESIDUE 941-1203; COMPND 5 SYNONYM: ENTACTIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LAMININ GAMMA-1 CHAIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: MODULES III 3-5, SEQUENCE DATABASE RESIDUE 769-932; COMPND 11 SYNONYM: LAMININ B2 CHAIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NID OR NID1 OR ENT; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: 293-EBNA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCEP-PU; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 GENE: LAMC1; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: 293-EBNA; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PCEP4 KEYWDS GLYCOPROTEIN, BASEMENT MEMBRANE, BETA-PROPELLER, EGF-LIKE, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.TAKAGI,Y.T.YANG,J.-H.LIU,J.-H.WANG,T.A.SPRINGER REVDAT 3 16-AUG-23 1NPE 1 REMARK LINK REVDAT 2 24-FEB-09 1NPE 1 VERSN REVDAT 1 12-AUG-03 1NPE 0 JRNL AUTH J.TAKAGI,Y.T.YANG,J.-H.LIU,J.-H.WANG,T.A.SPRINGER JRNL TITL COMPLEX BETWEEN NIDOGEN AND LAMININ FRAGMENTS REVEALS A JRNL TITL 2 PARADIGMATIC BETA-PROPELLER INTERFACE JRNL REF NATURE V. 424 969 2003 JRNL REFN ISSN 0028-0836 JRNL PMID 12931195 JRNL DOI 10.1038/NATURE01873 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 25858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2545 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.58100 REMARK 3 B22 (A**2) : -2.96000 REMARK 3 B33 (A**2) : -2.62100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.461 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.43 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.246 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000018079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25885 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 18.00 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IJQ AND 1KLO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M NAAC, 0.05 M CDSO4, 0.1 M, HEPES REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.09000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.29000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.29000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1176 REMARK 465 GLN A 1177 REMARK 465 GLY A 1178 REMARK 465 HIS A 1179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A1106 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 931 70.07 54.24 REMARK 500 ARG A 987 -45.67 -133.87 REMARK 500 ASP A 989 48.95 39.09 REMARK 500 ASP A1030 19.88 -154.07 REMARK 500 ARG A1037 -79.13 -148.68 REMARK 500 ASN A1054 108.72 -34.01 REMARK 500 GLN A1075 -41.44 -140.11 REMARK 500 TYR A1122 72.29 -154.29 REMARK 500 TYR A1166 -123.65 -120.17 REMARK 500 LYS B 753 7.14 57.41 REMARK 500 ASP B 779 79.50 -154.17 REMARK 500 ASN B 784 46.85 -151.73 REMARK 500 ASP B 844 44.79 -95.63 REMARK 500 LYS B 845 -111.87 -98.47 REMARK 500 GLN B 858 18.94 52.63 REMARK 500 GLN B 892 0.98 -67.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A5001 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 3 O REMARK 620 2 HOH A 23 O 98.3 REMARK 620 3 HOH A 25 O 90.4 91.3 REMARK 620 4 SER A1010 O 75.8 169.7 80.4 REMARK 620 5 ASP A1013 OD1 159.7 99.6 98.7 87.8 REMARK 620 6 VAL A1034 O 77.8 91.5 168.1 95.4 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B5004 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 84 O REMARK 620 2 HIS A1160 ND1 103.5 REMARK 620 3 HIS B 759 NE2 96.4 103.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A5003 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 94 O REMARK 620 2 HOH A 108 O 133.5 REMARK 620 3 HIS A1101 NE2 87.6 103.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A5005 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 102 O REMARK 620 2 HIS A 944 ND1 106.9 REMARK 620 3 GLU B 754 OE2 155.7 96.6 REMARK 620 4 GLU B 754 OE1 120.5 105.6 44.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B5002 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1064 ND1 REMARK 620 2 ASP A1066 OD2 127.1 REMARK 620 3 ASP A1066 OD1 106.7 52.2 REMARK 620 4 THR A1068 OG1 74.3 121.7 70.4 REMARK 620 5 HOH B 89 O 84.4 80.2 128.0 155.9 REMARK 620 6 GLU B 831 OE1 144.8 86.2 103.2 99.2 91.6 REMARK 620 7 GLU B 831 OE2 93.6 136.9 135.8 78.4 92.0 51.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B5006 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 105 O REMARK 620 2 HOH B 106 O 165.3 REMARK 620 3 HIS B 875 NE2 65.1 129.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 5002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 5003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 5004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 5005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 5006 DBREF 1NPE A 913 1179 UNP P02468 LAMC1_MOUSE 941 1207 DBREF 1NPE B 736 899 UNP P10493 NIDO_MOUSE 769 932 SEQRES 1 A 267 GLY THR HIS LEU LEU PHE ALA GLN THR GLY LYS ILE GLU SEQRES 2 A 267 ARG LEU PRO LEU GLU ARG ASN THR MET LYS LYS THR GLU SEQRES 3 A 267 ALA LYS ALA PHE LEU HIS ILE PRO ALA LYS VAL ILE ILE SEQRES 4 A 267 GLY LEU ALA PHE ASP CYS VAL ASP LYS VAL VAL TYR TRP SEQRES 5 A 267 THR ASP ILE SER GLU PRO SER ILE GLY ARG ALA SER LEU SEQRES 6 A 267 HIS GLY GLY GLU PRO THR THR ILE ILE ARG GLN ASP LEU SEQRES 7 A 267 GLY SER PRO GLU GLY ILE ALA LEU ASP HIS LEU GLY ARG SEQRES 8 A 267 THR ILE PHE TRP THR ASP SER GLN LEU ASP ARG ILE GLU SEQRES 9 A 267 VAL ALA LYS MET ASP GLY THR GLN ARG ARG VAL LEU PHE SEQRES 10 A 267 ASP THR GLY LEU VAL ASN PRO ARG GLY ILE VAL THR ASP SEQRES 11 A 267 PRO VAL ARG GLY ASN LEU TYR TRP THR ASP TRP ASN ARG SEQRES 12 A 267 ASP ASN PRO LYS ILE GLU THR SER HIS MET ASP GLY THR SEQRES 13 A 267 ASN ARG ARG ILE LEU ALA GLN ASP ASN LEU GLY LEU PRO SEQRES 14 A 267 ASN GLY LEU THR PHE ASP ALA PHE SER SER GLN LEU CYS SEQRES 15 A 267 TRP VAL ASP ALA GLY THR HIS ARG ALA GLU CYS LEU ASN SEQRES 16 A 267 PRO ALA GLN PRO GLY ARG ARG LYS VAL LEU GLU GLY LEU SEQRES 17 A 267 GLN TYR PRO PHE ALA VAL THR SER TYR GLY LYS ASN LEU SEQRES 18 A 267 TYR TYR THR ASP TRP LYS THR ASN SER VAL ILE ALA MET SEQRES 19 A 267 ASP LEU ALA ILE SER LYS GLU MET ASP THR PHE HIS PRO SEQRES 20 A 267 HIS LYS GLN THR ARG LEU TYR GLY ILE THR ILE ALA LEU SEQRES 21 A 267 SER GLN CYS PRO GLN GLY HIS SEQRES 1 B 164 GLN PRO CYS PRO CYS PRO GLY GLY SER SER CYS ALA ILE SEQRES 2 B 164 VAL PRO LYS THR LYS GLU VAL VAL CYS THR HIS CYS PRO SEQRES 3 B 164 THR GLY THR ALA GLY LYS ARG CYS GLU LEU CYS ASP ASP SEQRES 4 B 164 GLY TYR PHE GLY ASP PRO LEU GLY SER ASN GLY PRO VAL SEQRES 5 B 164 ARG LEU CYS ARG PRO CYS GLN CYS ASN ASP ASN ILE ASP SEQRES 6 B 164 PRO ASN ALA VAL GLY ASN CYS ASN ARG LEU THR GLY GLU SEQRES 7 B 164 CYS LEU LYS CYS ILE TYR ASN THR ALA GLY PHE TYR CYS SEQRES 8 B 164 ASP ARG CYS LYS GLU GLY PHE PHE GLY ASN PRO LEU ALA SEQRES 9 B 164 PRO ASN PRO ALA ASP LYS CYS LYS ALA CYS ALA CYS ASN SEQRES 10 B 164 PRO TYR GLY THR VAL GLN GLN GLN SER SER CYS ASN PRO SEQRES 11 B 164 VAL THR GLY GLN CYS GLN CYS LEU PRO HIS VAL SER GLY SEQRES 12 B 164 ARG ASP CYS GLY THR CYS ASP PRO GLY TYR TYR ASN LEU SEQRES 13 B 164 GLN SER GLY GLN GLY CYS GLU ARG HET CD A5001 1 HET CD A5003 1 HET CD A5005 1 HET CD B5002 1 HET CD B5004 1 HET CD B5006 1 HETNAM CD CADMIUM ION FORMUL 3 CD 6(CD 2+) FORMUL 9 HOH *127(H2 O) HELIX 1 1 LYS A 935 ALA A 939 5 5 HELIX 2 2 THR B 856 GLN B 860 5 5 HELIX 3 3 ASN B 890 GLY B 894 5 5 SHEET 1 A 6 THR A 983 ILE A 986 0 SHEET 2 A 6 SER A 971 SER A 976 -1 O ILE A 972 N ILE A 985 SHEET 3 A 6 VAL A 961 ASP A 966 -1 N VAL A 962 O ALA A 975 SHEET 4 A 6 LYS A 940 ASP A 956 -1 N ILE A 951 O THR A 965 SHEET 5 A 6 THR A 914 LEU A 929 -1 O GLN A 920 N ILE A 950 SHEET 6 A 6 ILE A1168 ALA A1171 -1 O THR A1169 N LEU A 917 SHEET 1 B 4 PRO A 993 ASP A 999 0 SHEET 2 B 4 THR A1004 ASP A1009 -1 O THR A1004 N ASP A 999 SHEET 3 B 4 ARG A1014 LYS A1019 -1 O ARG A1014 N ASP A1009 SHEET 4 B 4 ARG A1026 PHE A1029 -1 O ARG A1026 N VAL A1017 SHEET 1 C 4 PRO A1036 ASP A1042 0 SHEET 2 C 4 ASN A1047 ASP A1052 -1 O ASN A1047 N ASP A1042 SHEET 3 C 4 LYS A1059 HIS A1064 -1 N LYS A1059 O ASP A1052 SHEET 4 C 4 ARG A1071 ALA A1074 -1 O ARG A1071 N THR A1062 SHEET 1 D 4 PRO A1081 ASP A1087 0 SHEET 2 D 4 GLN A1092 ASP A1097 -1 O GLN A1092 N ASP A1087 SHEET 3 D 4 ARG A1102 ASN A1107 -1 O ARG A1102 N ASP A1097 SHEET 4 D 4 GLN A1110 GLU A1118 -1 N GLN A1110 O ASN A1107 SHEET 1 E 4 PRO A1123 TYR A1129 0 SHEET 2 E 4 ASN A1132 ASP A1137 -1 O ASN A1132 N TYR A1129 SHEET 3 E 4 SER A1142 ASP A1147 -1 O SER A1142 N ASP A1137 SHEET 4 E 4 LYS A1152 PHE A1157 -1 O LYS A1152 N ASP A1147 SHEET 1 F 2 CYS B 746 ILE B 748 0 SHEET 2 F 2 VAL B 755 CYS B 757 -1 N VAL B 756 O ALA B 747 SHEET 1 G 2 THR B 764 ALA B 765 0 SHEET 2 G 2 LEU B 771 CYS B 772 -1 O LEU B 771 N ALA B 765 SHEET 1 H 2 TYR B 776 ASP B 779 0 SHEET 2 H 2 ARG B 788 PRO B 792 -1 O ARG B 788 N ASP B 779 SHEET 1 I 2 THR B 821 ALA B 822 0 SHEET 2 I 2 ARG B 828 CYS B 829 -1 O ARG B 828 N ALA B 822 SHEET 1 J 2 PHE B 833 PHE B 834 0 SHEET 2 J 2 LYS B 847 ALA B 848 -1 N LYS B 847 O PHE B 834 SHEET 1 K 2 VAL B 876 SER B 877 0 SHEET 2 K 2 THR B 883 CYS B 884 -1 O THR B 883 N SER B 877 SSBOND 1 CYS A 957 CYS A 1175 1555 1555 2.04 SSBOND 2 CYS A 1094 CYS A 1105 1555 1555 2.04 SSBOND 3 CYS B 738 CYS B 746 1555 1555 2.04 SSBOND 4 CYS B 740 CYS B 757 1555 1555 2.03 SSBOND 5 CYS B 760 CYS B 769 1555 1555 2.03 SSBOND 6 CYS B 772 CYS B 790 1555 1555 2.04 SSBOND 7 CYS B 793 CYS B 807 1555 1555 2.04 SSBOND 8 CYS B 795 CYS B 814 1555 1555 2.03 SSBOND 9 CYS B 817 CYS B 826 1555 1555 2.03 SSBOND 10 CYS B 829 CYS B 846 1555 1555 2.03 SSBOND 11 CYS B 849 CYS B 863 1555 1555 2.03 SSBOND 12 CYS B 851 CYS B 870 1555 1555 2.03 SSBOND 13 CYS B 872 CYS B 881 1555 1555 2.04 SSBOND 14 CYS B 884 CYS B 897 1555 1555 2.03 LINK O HOH A 3 CD CD A5001 1555 1555 2.63 LINK O HOH A 23 CD CD A5001 1555 1555 2.48 LINK O HOH A 25 CD CD A5001 1555 1555 2.68 LINK O HOH A 84 CD CD B5004 1555 1555 2.77 LINK O HOH A 94 CD CD A5003 1555 1555 1.92 LINK O HOH A 102 CD CD A5005 1555 1555 2.71 LINK O HOH A 108 CD CD A5003 1555 1555 2.36 LINK ND1 HIS A 944 CD CD A5005 1555 1555 2.51 LINK O SER A1010 CD CD A5001 1555 1555 2.39 LINK OD1 ASP A1013 CD CD A5001 1555 1555 2.10 LINK O VAL A1034 CD CD A5001 1555 1555 2.32 LINK ND1 HIS A1064 CD CD B5002 4467 1555 2.22 LINK OD2 ASP A1066 CD CD B5002 4467 1555 2.20 LINK OD1 ASP A1066 CD CD B5002 4467 1555 2.66 LINK OG1 THR A1068 CD CD B5002 4467 1555 2.32 LINK NE2 HIS A1101 CD CD A5003 1555 1555 2.07 LINK ND1 HIS A1160 CD CD B5004 1555 1555 2.64 LINK CD CD A5005 OE2 GLU B 754 1555 1555 3.04 LINK CD CD A5005 OE1 GLU B 754 1555 1555 2.74 LINK O HOH B 89 CD CD B5002 1555 1555 2.64 LINK O HOH B 105 CD CD B5006 1555 1555 2.54 LINK O HOH B 106 CD CD B5006 1555 1555 2.38 LINK NE2 HIS B 759 CD CD B5004 1555 1555 2.15 LINK OE1 GLU B 831 CD CD B5002 1555 1555 2.41 LINK OE2 GLU B 831 CD CD B5002 1555 1555 2.63 LINK NE2 HIS B 875 CD CD B5006 1555 1555 2.42 CISPEP 1 GLU A 969 PRO A 970 0 -0.47 SITE 1 AC1 6 HOH A 3 HOH A 23 HOH A 25 SER A1010 SITE 2 AC1 6 ASP A1013 VAL A1034 SITE 1 AC2 6 HIS A1064 ASP A1066 THR A1068 HOH B 89 SITE 2 AC2 6 GLU B 831 SER B 862 SITE 1 AC3 3 HOH A 94 HOH A 108 HIS A1101 SITE 1 AC4 3 HOH A 84 HIS A1160 HIS B 759 SITE 1 AC5 3 HOH A 102 HIS A 944 GLU B 754 SITE 1 AC6 3 HOH B 105 HOH B 106 HIS B 875 CRYST1 72.180 75.830 104.580 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013854 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009562 0.00000