PDB Short entry for 1NPL HEADER SUGAR BINDING PROTEIN 17-DEC-98 1NPL TITLE MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM DAFFODIL (NARCISSUS TITLE 2 PSEUDONARCISSUS) BULBS IN COMPLEX WITH MANNOSE-ALPHA1,3-MANNOSE CAVEAT 1NPL MAN E 2 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (AGGLUTININ); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DAFFODIL LECTIN; COMPND 5 OTHER_DETAILS: FROM DAFFODIL PLANT FAMILY OF AMARYLLIDACEAE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NARCISSUS PSEUDONARCISSUS; SOURCE 3 ORGANISM_COMMON: DAFFODIL; SOURCE 4 ORGANISM_TAXID: 39639; SOURCE 5 STRAIN: DUTCH MASTER; SOURCE 6 ORGAN: BULBS KEYWDS LECTIN, AGGLUTININ, MANNOBIOSE, MANNOSE-ALPHA1, 3-MANNOSE, DAFFODIL, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.K.SAUERBORN,L.M.WRIGHT,C.D.REYNOLDS,J.G.GROSSMANN,P.J.RIZKALLAH REVDAT 5 29-JUL-20 1NPL 1 CAVEAT COMPND REMARK SEQADV REVDAT 5 2 1 HETNAM LINK SITE ATOM REVDAT 4 13-JUL-11 1NPL 1 VERSN REVDAT 3 24-FEB-09 1NPL 1 VERSN REVDAT 2 29-DEC-99 1NPL 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 23-DEC-98 1NPL 0 JRNL AUTH M.K.SAUERBORN,L.M.WRIGHT,C.D.REYNOLDS,J.G.GROSSMANN, JRNL AUTH 2 P.J.RIZKALLAH JRNL TITL INSIGHTS INTO CARBOHYDRATE RECOGNITION BY NARCISSUS JRNL TITL 2 PSEUDONARCISSUS LECTIN: THE CRYSTAL STRUCTURE AT 2 A JRNL TITL 3 RESOLUTION IN COMPLEX WITH ALPHA1-3 MANNOBIOSE. JRNL REF J.MOL.BIOL. V. 290 185 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10388566 JRNL DOI 10.1006/JMBI.1999.2862 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 8984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 457 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.800 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.037 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.039 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.015 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.140 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.185 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.207 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 8.900 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 16.500; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 17.100; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.040 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.820 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.060 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 DISORDERED REGION WERE REFINED IN TWO EQUAL CONFORMATIONS REMARK 3 (50% OCCUPANCY EACH). NO ATTEMPT WAS MADE AT REFINING THEIR REMARK 3 OCCUPANCIES. THE MODEL WAS CHECKED AGAINST ELECTRON REMARK 3 DENSITY. REMARK 4 REMARK 4 1NPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-96 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRROR, MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9490 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.07000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.27300 REMARK 200 R SYM FOR SHELL (I) : 0.27600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROTATION METHOD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION, SITTING DROP, 10 REMARK 280 MG/ML IN PBS CONTAINING UP TO 20 MM MANNOBIOSE, EQUILIBRATED REMARK 280 AGAINST 40 - 60% AMMONIUM SULPHATE. 17 DEG. C, 4 - 6 DAYS, PH REMARK 280 6.5, VAPOR DIFFUSION - SITTING DROP, TEMPERATURE 290K, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.65000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.65000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.65000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.60000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.65000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.60000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.30000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 73.30000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 37.30000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 37.30000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.30000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.30000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 154 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 49 NH2 ARG A 68 1.90 REMARK 500 OD1 ASN A 44 O HOH A 248 1.91 REMARK 500 O ASP A 37 O HOH A 186 2.02 REMARK 500 OH TYR A 5 O1 PO4 A 150 2.04 REMARK 500 O3 MAN D 1 O5 MAN D 2 2.07 REMARK 500 O6 MAN D 2 O HOH A 225 2.08 REMARK 500 N SER A 58 O2 PO4 A 152 2.17 REMARK 500 O HOH A 242 O HOH A 243 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 18 O3 PO4 A 150 3656 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 14 OE1 - CD - OE2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ARG A 20 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ASP A 37 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 MET A 56 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 TYR A 65 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 68 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 101 CD - NE - CZ ANGL. DEV. = 22.1 DEGREES REMARK 500 ARG A 101 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 36 -116.59 59.41 REMARK 500 ASP A 49 -166.29 -173.65 REMARK 500 ASN A 69 28.44 80.24 REMARK 500 ARG A 92 1.60 80.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 1NPL A 1 109 GB 289871 L16511 24 132 SEQADV 1NPL PHE A 15 GB 289871 TYR 38 CONFLICT SEQADV 1NPL ASN A 17 GB 289871 SER 40 CONFLICT SEQADV 1NPL ASN A 18 GB 289871 TYR 41 CONFLICT SEQADV 1NPL GLU A 27 GB 289871 GLN 50 CONFLICT SEQADV 1NPL ASP A 35 GB 289871 ASN 58 CONFLICT SEQADV 1NPL LEU A 48 GB 289871 VAL 71 CONFLICT SEQADV 1NPL ASP A 49 GB 289871 SER 72 CONFLICT SEQADV 1NPL ARG A 50 GB 289871 SER 73 CONFLICT SEQADV 1NPL ARG A 51 GB 289871 GLY 74 CONFLICT SEQADV 1NPL SER A 58 GB 289871 THR 81 CONFLICT SEQADV 1NPL PRO A 67 GB 289871 ARG 90 CONFLICT SEQADV 1NPL ARG A 68 GB 289871 LYS 91 CONFLICT SEQRES 1 A 109 ASP ASN ILE LEU TYR SER GLY GLU THR LEU SER PRO GLY SEQRES 2 A 109 GLU PHE LEU ASN ASN GLY ARG TYR VAL PHE ILE MET GLN SEQRES 3 A 109 GLU ASP CYS ASN LEU VAL LEU TYR ASP VAL ASP LYS PRO SEQRES 4 A 109 ILE TRP ALA THR ASN THR GLY GLY LEU ASP ARG ARG CYS SEQRES 5 A 109 HIS LEU SER MET GLN SER ASP GLY ASN LEU VAL VAL TYR SEQRES 6 A 109 SER PRO ARG ASN ASN PRO ILE TRP ALA SER ASN THR GLY SEQRES 7 A 109 GLY GLU ASN GLY ASN TYR VAL CYS VAL LEU GLN LYS ASP SEQRES 8 A 109 ARG ASN VAL VAL ILE TYR GLY THR ALA ARG TRP ALA THR SEQRES 9 A 109 GLY THR ASN ILE HIS HET MAN B 1 12 HET MAN B 2 11 HET MAN C 1 12 HET MAN C 2 11 HET MAN D 1 12 HET MAN D 2 11 HET MAN E 1 24 HET MAN E 2 22 HET PO4 A 150 5 HET PO4 A 151 5 HET PO4 A 152 5 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PO4 PHOSPHATE ION FORMUL 2 MAN 8(C6 H12 O6) FORMUL 6 PO4 3(O4 P 3-) FORMUL 9 HOH *97(H2 O) SHEET 1 A 3 ILE A 3 TYR A 5 0 SHEET 2 A 3 VAL A 85 LEU A 88 -1 N CYS A 86 O LEU A 4 SHEET 3 A 3 VAL A 94 TYR A 97 -1 N TYR A 97 O VAL A 85 SHEET 1 B 4 PHE A 15 ASN A 18 0 SHEET 2 B 4 TYR A 21 MET A 25 -1 N PHE A 23 O LEU A 16 SHEET 3 B 4 LEU A 31 ASP A 35 -1 N TYR A 34 O VAL A 22 SHEET 4 B 4 LYS A 38 ALA A 42 -1 N TRP A 41 O LEU A 33 SHEET 1 C 3 HIS A 53 MET A 56 0 SHEET 2 C 3 LEU A 62 TYR A 65 -1 N TYR A 65 O HIS A 53 SHEET 3 C 3 PRO A 71 ALA A 74 -1 N TRP A 73 O VAL A 64 SSBOND 1 CYS A 29 CYS A 52 1555 1555 2.00 LINK O3 MAN B 1 C1 MAN B 2 1555 1555 1.40 LINK O3 MAN C 1 C1 MAN C 2 1555 1555 1.40 LINK O3 MAN D 1 C1 MAN D 2 1555 1555 1.40 LINK O3 AMAN E 1 C1 AMAN E 2 1555 1555 1.40 LINK O3 BMAN E 1 C1 BMAN E 2 1555 1555 1.42 CISPEP 1 GLY A 98 THR A 99 0 3.39 CRYST1 73.300 101.200 37.300 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013642 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026810 0.00000