PDB Short entry for 1NYU HEADER MEMBRANE PROTEIN/HORMONE/GROWTH FACTOR 13-FEB-03 1NYU TITLE CRYSTAL STRUCTURE OF ACTIVIN A BOUND TO THE ECD OF ACTRIIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIVIN RECEPTOR; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: N-TERMINAL EXTRACELLULAR DOMAIN (RESIDUES 19-119); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INHIBIN BETA A CHAIN; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: MATURE DOMAIN (RESIDUES 311-426); COMPND 10 SYNONYM: ACTIVIN BETA-A CHAIN, ERYTHROID DIFFERENTIATION PROTEIN, COMPND 11 EDF; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ACTRIIB; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF+; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVL1392; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: INHBA; SOURCE 17 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BA83.6-02 KEYWDS ACTIVIN, TYPE II, TGF BETA, ACTRIIB, EXTRACELLULAR DOMAIN, MEMBRANE KEYWDS 2 PROTEIN-HORMONE-GROWTH FACTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.B.THOMPSON,T.K.WOODRUFF,T.S.JARDETZKY REVDAT 5 16-AUG-23 1NYU 1 SEQADV REVDAT 4 11-OCT-17 1NYU 1 REMARK REVDAT 3 30-MAY-12 1NYU 1 DBREF SEQADV VERSN REVDAT 2 24-FEB-09 1NYU 1 VERSN REVDAT 1 08-APR-03 1NYU 0 JRNL AUTH T.B.THOMPSON,T.K.WOODRUFF,T.S.JARDETZKY JRNL TITL STRUCTURES OF AN ACTRIIB:ACTIVIN A COMPLEX REVEAL A NOVEL JRNL TITL 2 BINDING MODE FOR TGF-BETA LIGAND:RECEPTOR INTERACTIONS JRNL REF EMBO J. V. 22 1555 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12660162 JRNL DOI 10.1093/EMBOJ/CDG156 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 8777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 657 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1329 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 107 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2375 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 95.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.06000 REMARK 3 B22 (A**2) : 3.06000 REMARK 3 B33 (A**2) : -6.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.49 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.020 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.26 REMARK 3 BSOL : 34.22 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8777 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 14.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BRUTE, BEAST, CNS REMARK 200 STARTING MODEL: PDB ENTRY 1BTE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CHLORIDE, HEPES, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.01050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.66500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.50525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.66500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.51575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.66500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 11.50525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.66500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.51575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 23.01050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 ARG A 21 REMARK 465 GLY A 22 REMARK 465 GLU A 23 REMARK 465 ALA A 24 REMARK 465 GLU A 25 REMARK 465 GLY A 45 REMARK 465 PRO A 119 REMARK 465 LEU A 120 REMARK 465 VAL A 121 REMARK 465 PRO A 122 REMARK 465 ARG A 123 REMARK 465 GLY B 1 REMARK 465 ASN B 9 REMARK 465 ALA B 49 REMARK 465 GLY B 50 REMARK 465 THR B 51 REMARK 465 SER B 52 REMARK 465 GLY B 53 REMARK 465 SER B 54 REMARK 465 SER B 55 REMARK 465 LEU B 56 REMARK 465 SER B 57 REMARK 465 PHE B 58 REMARK 465 HIS B 59 REMARK 465 SER B 60 REMARK 465 THR B 61 REMARK 465 VAL B 62 REMARK 465 ILE B 63 REMARK 465 ASN B 64 REMARK 465 HIS B 65 REMARK 465 TYR B 66 REMARK 465 ARG B 67 REMARK 465 MET B 68 REMARK 465 ARG B 69 REMARK 465 GLY B 70 REMARK 465 HIS B 71 REMARK 465 SER B 72 REMARK 465 PRO B 73 REMARK 465 PHE B 74 REMARK 465 ALA B 75 REMARK 465 ASN B 76 REMARK 465 SER C 19 REMARK 465 GLY C 20 REMARK 465 ARG C 21 REMARK 465 GLY C 22 REMARK 465 GLU C 23 REMARK 465 ALA C 24 REMARK 465 GLU C 25 REMARK 465 GLU C 37 REMARK 465 ARG C 64 REMARK 465 ASN C 65 REMARK 465 SER C 66 REMARK 465 SER C 67 REMARK 465 GLY C 68 REMARK 465 ASP C 81 REMARK 465 ASP C 86 REMARK 465 ARG C 87 REMARK 465 GLN C 88 REMARK 465 PRO C 119 REMARK 465 LEU C 120 REMARK 465 VAL C 121 REMARK 465 PRO C 122 REMARK 465 ARG C 123 REMARK 465 GLY D 1 REMARK 465 LEU D 2 REMARK 465 GLU D 3 REMARK 465 CYS D 4 REMARK 465 ASP D 5 REMARK 465 GLY D 6 REMARK 465 LYS D 7 REMARK 465 VAL D 8 REMARK 465 ASN D 9 REMARK 465 ILE D 10 REMARK 465 GLN D 15 REMARK 465 PHE D 20 REMARK 465 LYS D 21 REMARK 465 ASP D 22 REMARK 465 ILE D 23 REMARK 465 GLY D 24 REMARK 465 TRP D 25 REMARK 465 ASN D 26 REMARK 465 ASP D 27 REMARK 465 TRP D 28 REMARK 465 ALA D 37 REMARK 465 SER D 46 REMARK 465 HIS D 47 REMARK 465 ILE D 48 REMARK 465 ALA D 49 REMARK 465 GLY D 50 REMARK 465 THR D 51 REMARK 465 SER D 52 REMARK 465 GLY D 53 REMARK 465 SER D 54 REMARK 465 SER D 55 REMARK 465 LEU D 56 REMARK 465 SER D 57 REMARK 465 PHE D 58 REMARK 465 HIS D 59 REMARK 465 SER D 60 REMARK 465 THR D 61 REMARK 465 VAL D 62 REMARK 465 ILE D 63 REMARK 465 ASN D 64 REMARK 465 HIS D 65 REMARK 465 TYR D 66 REMARK 465 ARG D 67 REMARK 465 MET D 68 REMARK 465 ARG D 69 REMARK 465 GLY D 70 REMARK 465 HIS D 71 REMARK 465 SER D 72 REMARK 465 PRO D 73 REMARK 465 PHE D 74 REMARK 465 ALA D 75 REMARK 465 ASN D 76 REMARK 465 LEU D 77 REMARK 465 LYS D 78 REMARK 465 SER D 79 REMARK 465 GLN D 98 REMARK 465 ASN D 99 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 26 OG1 CG2 REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 ASP A 54 CG OD1 OD2 REMARK 470 SER A 66 OG REMARK 470 SER A 67 OG REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 ASP B 5 CG OD1 OD2 REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 VAL B 8 CG1 CG2 REMARK 470 ILE B 10 CG1 CG2 CD1 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 GLN B 15 CG CD OE1 NE2 REMARK 470 TYR B 39 OH REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLU B 43 CG CD OE1 OE2 REMARK 470 ILE B 48 CG1 CG2 CD1 REMARK 470 LEU B 77 CG CD1 CD2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 SER B 79 OG REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 TYR C 32 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 40 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 50 CG CD OE1 OE2 REMARK 470 GLU C 52 CG CD OE1 OE2 REMARK 470 GLN C 53 CG CD OE1 NE2 REMARK 470 ASP C 54 CG OD1 OD2 REMARK 470 ARG C 56 CG CD NE CZ NH1 NH2 REMARK 470 THR C 69 OG1 CG2 REMARK 470 GLU C 71 CG CD OE1 OE2 REMARK 470 ASN C 83 CG OD1 ND2 REMARK 470 CYS C 84 SG REMARK 470 THR C 93 OG1 CG2 REMARK 470 GLU C 95 CG CD OE1 OE2 REMARK 470 TYR C 100 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 112 CG CD NE CZ NH1 NH2 REMARK 470 PRO C 117 CG CD REMARK 470 GLU C 118 CG CD OE1 OE2 REMARK 470 CYS D 12 SG REMARK 470 LYS D 13 CG CD CE NZ REMARK 470 LYS D 14 CG CD CE NZ REMARK 470 VAL D 18 CG1 CG2 REMARK 470 SER D 19 OG REMARK 470 HIS D 36 CG ND1 CD2 CE1 NE2 REMARK 470 TYR D 39 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 41 CG CD OE1 OE2 REMARK 470 GLU D 43 CG CD OE1 OE2 REMARK 470 LYS D 85 CG CD CE NZ REMARK 470 LEU D 86 CG CD1 CD2 REMARK 470 ARG D 87 CG CD NE CZ NH1 NH2 REMARK 470 SER D 90 OG REMARK 470 ASP D 95 CG OD1 OD2 REMARK 470 ASP D 96 CG OD1 OD2 REMARK 470 LYS D 102 CG CD CE NZ REMARK 470 LYS D 103 CG CD CE NZ REMARK 470 GLU D 111 CG CD OE1 OE2 REMARK 470 GLU D 112 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ILE D 30 O LEU D 92 1.97 REMARK 500 O THR C 26 OD1 ASN C 107 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU C 111 OE2 GLU C 111 7555 1.55 REMARK 500 OE2 GLU A 111 OE2 GLU A 111 7556 1.92 REMARK 500 NZ LYS A 75 OE1 GLU A 111 7556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 29 CA - CB - SG ANGL. DEV. = -11.3 DEGREES REMARK 500 CYS A 59 CA - CB - SG ANGL. DEV. = -11.1 DEGREES REMARK 500 PRO A 117 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 SER B 46 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 ASP D 104 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 SER D 116 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 40 71.88 43.01 REMARK 500 ASP A 54 72.00 53.48 REMARK 500 ASN A 65 75.74 -114.19 REMARK 500 VAL A 73 -74.23 -126.52 REMARK 500 ASP A 80 113.37 -23.08 REMARK 500 ASP A 86 10.66 58.12 REMARK 500 ASP B 5 -167.19 -166.11 REMARK 500 GLN C 53 -98.27 -35.23 REMARK 500 ALA D 31 145.77 -170.97 REMARK 500 ASP D 96 71.91 44.59 REMARK 500 ASN D 107 81.97 47.89 REMARK 500 CYS D 113 -151.24 -89.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NYS RELATED DB: PDB DBREF 1NYU A 19 119 UNP P38445 AVR2B_RAT 19 119 DBREF 1NYU B 1 116 UNP P08476 INHBA_HUMAN 311 426 DBREF 1NYU C 19 119 UNP P38445 AVR2B_RAT 19 119 DBREF 1NYU D 1 116 UNP P08476 INHBA_HUMAN 311 426 SEQADV 1NYU LEU A 120 UNP P38445 EXPRESSION TAG SEQADV 1NYU VAL A 121 UNP P38445 EXPRESSION TAG SEQADV 1NYU PRO A 122 UNP P38445 EXPRESSION TAG SEQADV 1NYU ARG A 123 UNP P38445 EXPRESSION TAG SEQADV 1NYU LEU C 120 UNP P38445 EXPRESSION TAG SEQADV 1NYU VAL C 121 UNP P38445 EXPRESSION TAG SEQADV 1NYU PRO C 122 UNP P38445 EXPRESSION TAG SEQADV 1NYU ARG C 123 UNP P38445 EXPRESSION TAG SEQRES 1 A 105 SER GLY ARG GLY GLU ALA GLU THR ARG GLU CYS ILE TYR SEQRES 2 A 105 TYR ASN ALA ASN TRP GLU LEU GLU ARG THR ASN GLN SER SEQRES 3 A 105 GLY LEU GLU ARG CYS GLU GLY GLU GLN ASP LYS ARG LEU SEQRES 4 A 105 HIS CYS TYR ALA SER TRP ARG ASN SER SER GLY THR ILE SEQRES 5 A 105 GLU LEU VAL LYS LYS GLY CYS TRP LEU ASP ASP PHE ASN SEQRES 6 A 105 CYS TYR ASP ARG GLN GLU CYS VAL ALA THR GLU GLU ASN SEQRES 7 A 105 PRO GLN VAL TYR PHE CYS CYS CYS GLU GLY ASN PHE CYS SEQRES 8 A 105 ASN GLU ARG PHE THR HIS LEU PRO GLU PRO LEU VAL PRO SEQRES 9 A 105 ARG SEQRES 1 B 116 GLY LEU GLU CYS ASP GLY LYS VAL ASN ILE CYS CYS LYS SEQRES 2 B 116 LYS GLN PHE PHE VAL SER PHE LYS ASP ILE GLY TRP ASN SEQRES 3 B 116 ASP TRP ILE ILE ALA PRO SER GLY TYR HIS ALA ASN TYR SEQRES 4 B 116 CYS GLU GLY GLU CYS PRO SER HIS ILE ALA GLY THR SER SEQRES 5 B 116 GLY SER SER LEU SER PHE HIS SER THR VAL ILE ASN HIS SEQRES 6 B 116 TYR ARG MET ARG GLY HIS SER PRO PHE ALA ASN LEU LYS SEQRES 7 B 116 SER CYS CYS VAL PRO THR LYS LEU ARG PRO MET SER MET SEQRES 8 B 116 LEU TYR TYR ASP ASP GLY GLN ASN ILE ILE LYS LYS ASP SEQRES 9 B 116 ILE GLN ASN MET ILE VAL GLU GLU CYS GLY CYS SER SEQRES 1 C 105 SER GLY ARG GLY GLU ALA GLU THR ARG GLU CYS ILE TYR SEQRES 2 C 105 TYR ASN ALA ASN TRP GLU LEU GLU ARG THR ASN GLN SER SEQRES 3 C 105 GLY LEU GLU ARG CYS GLU GLY GLU GLN ASP LYS ARG LEU SEQRES 4 C 105 HIS CYS TYR ALA SER TRP ARG ASN SER SER GLY THR ILE SEQRES 5 C 105 GLU LEU VAL LYS LYS GLY CYS TRP LEU ASP ASP PHE ASN SEQRES 6 C 105 CYS TYR ASP ARG GLN GLU CYS VAL ALA THR GLU GLU ASN SEQRES 7 C 105 PRO GLN VAL TYR PHE CYS CYS CYS GLU GLY ASN PHE CYS SEQRES 8 C 105 ASN GLU ARG PHE THR HIS LEU PRO GLU PRO LEU VAL PRO SEQRES 9 C 105 ARG SEQRES 1 D 116 GLY LEU GLU CYS ASP GLY LYS VAL ASN ILE CYS CYS LYS SEQRES 2 D 116 LYS GLN PHE PHE VAL SER PHE LYS ASP ILE GLY TRP ASN SEQRES 3 D 116 ASP TRP ILE ILE ALA PRO SER GLY TYR HIS ALA ASN TYR SEQRES 4 D 116 CYS GLU GLY GLU CYS PRO SER HIS ILE ALA GLY THR SER SEQRES 5 D 116 GLY SER SER LEU SER PHE HIS SER THR VAL ILE ASN HIS SEQRES 6 D 116 TYR ARG MET ARG GLY HIS SER PRO PHE ALA ASN LEU LYS SEQRES 7 D 116 SER CYS CYS VAL PRO THR LYS LEU ARG PRO MET SER MET SEQRES 8 D 116 LEU TYR TYR ASP ASP GLY GLN ASN ILE ILE LYS LYS ASP SEQRES 9 D 116 ILE GLN ASN MET ILE VAL GLU GLU CYS GLY CYS SER HELIX 1 1 LYS B 21 GLY B 24 5 4 HELIX 2 2 PHE C 108 ARG C 112 5 5 SHEET 1 A 2 GLU A 28 CYS A 29 0 SHEET 2 A 2 GLU A 47 ARG A 48 -1 O GLU A 47 N CYS A 29 SHEET 1 B 4 TYR A 32 ASN A 33 0 SHEET 2 B 4 ILE A 70 LEU A 79 -1 O LYS A 75 N TYR A 32 SHEET 3 B 4 LEU A 57 ASN A 65 -1 N HIS A 58 O TRP A 78 SHEET 4 B 4 TYR A 100 CYS A 104 -1 O CYS A 104 N CYS A 59 SHEET 1 C 2 VAL A 91 ALA A 92 0 SHEET 2 C 2 THR A 114 HIS A 115 1 O THR A 114 N ALA A 92 SHEET 1 D 2 CYS B 12 SER B 19 0 SHEET 2 D 2 GLY B 34 GLU B 41 -1 O TYR B 39 N LYS B 14 SHEET 1 E 3 ILE B 29 ALA B 31 0 SHEET 2 E 3 CYS B 81 ASP B 95 -1 O LEU B 92 N ALA B 31 SHEET 3 E 3 ASN B 99 CYS B 115 -1 O ILE B 101 N TYR B 93 SHEET 1 F 5 SER C 44 ARG C 48 0 SHEET 2 F 5 GLU C 28 ASN C 33 -1 N TYR C 31 O GLY C 45 SHEET 3 F 5 LYS C 74 LEU C 79 -1 O LYS C 75 N TYR C 32 SHEET 4 F 5 LEU C 57 TRP C 63 -1 N HIS C 58 O TRP C 78 SHEET 5 F 5 TYR C 100 CYS C 104 -1 O CYS C 104 N CYS C 59 SHEET 1 G 2 VAL C 91 ALA C 92 0 SHEET 2 G 2 THR C 114 HIS C 115 1 O THR C 114 N ALA C 92 SHEET 1 H 2 LYS D 13 LYS D 14 0 SHEET 2 H 2 TYR D 39 CYS D 40 -1 O TYR D 39 N LYS D 14 SHEET 1 I 2 LYS D 85 TYR D 93 0 SHEET 2 I 2 ILE D 101 GLU D 112 -1 O ILE D 105 N MET D 89 SSBOND 1 CYS A 29 CYS A 59 1555 1555 1.98 SSBOND 2 CYS A 49 CYS A 77 1555 1555 2.05 SSBOND 3 CYS A 84 CYS A 103 1555 1555 2.02 SSBOND 4 CYS A 90 CYS A 102 1555 1555 2.04 SSBOND 5 CYS A 104 CYS A 109 1555 1555 2.03 SSBOND 6 CYS B 4 CYS B 12 1555 1555 2.02 SSBOND 7 CYS B 11 CYS B 81 1555 1555 2.02 SSBOND 8 CYS B 40 CYS B 113 1555 1555 2.03 SSBOND 9 CYS B 44 CYS B 115 1555 1555 2.04 SSBOND 10 CYS B 80 CYS D 80 1555 1555 2.03 SSBOND 11 CYS C 29 CYS C 59 1555 1555 2.01 SSBOND 12 CYS C 49 CYS C 77 1555 1555 2.03 SSBOND 13 CYS C 90 CYS C 102 1555 1555 2.03 SSBOND 14 CYS C 104 CYS C 109 1555 1555 2.03 SSBOND 15 CYS D 11 CYS D 81 1555 1555 2.02 SSBOND 16 CYS D 40 CYS D 113 1555 1555 2.03 SSBOND 17 CYS D 44 CYS D 115 1555 1555 2.03 CISPEP 1 ALA B 31 PRO B 32 0 0.34 CISPEP 2 ALA D 31 PRO D 32 0 -1.21 CRYST1 141.330 141.330 46.021 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021729 0.00000