PDB Short entry for 1NZC HEADER ISOMERASE 17-FEB-03 1NZC TITLE THE HIGH RESOLUTION STRUCTURES OF RMLC FROM STREPTOCOCCUS SUIS IN TITLE 2 COMPLEX WITH DTDP-D-XYLOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE; COMPND 5 EC: 5.1.3.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SUIS; SOURCE 3 ORGANISM_TAXID: 1307; SOURCE 4 STRAIN: SEROTYPE 2; SOURCE 5 GENE: RMLC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21(+) KEYWDS JELLY ROLL-LIKE STRUCTURE; BETA SHEET, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,L.L.MAJOR,A.ALLEN,W.BLANKENFELDT,D.MASKELL,J.H.NAISMITH REVDAT 3 16-AUG-23 1NZC 1 REMARK LINK REVDAT 2 24-FEB-09 1NZC 1 VERSN REVDAT 1 24-JUN-03 1NZC 0 JRNL AUTH C.DONG,L.L.MAJOR,A.ALLEN,W.BLANKENFELDT,D.MASKELL, JRNL AUTH 2 J.H.NAISMITH JRNL TITL HIGH-RESOLUTION STRUCTURES OF RMLC FROM STREPTOCOCCUS SUIS JRNL TITL 2 IN COMPLEX WITH SUBSTRATE ANALOGS LOCATE THE ACTIVE SITE OF JRNL TITL 3 THIS CLASS OF ENZYME JRNL REF STRUCTURE V. 11 715 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12791259 JRNL DOI 10.1016/S0969-2126(03)00098-4 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.574 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 60716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3217 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1480 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 874 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.022 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6627 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5736 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9010 ; 1.577 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13417 ; 0.911 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 776 ; 7.410 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 941 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7316 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1388 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1187 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6640 ; 0.256 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3658 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 622 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.289 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 117 ; 0.271 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 81 ; 0.350 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3884 ; 0.747 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6246 ; 1.294 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2743 ; 1.847 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2764 ; 2.882 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6627 ; 1.119 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 927 ; 2.886 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6439 ; 1.069 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 19 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 22 A 27 2 REMARK 3 1 B 22 B 27 2 REMARK 3 1 C 22 C 27 2 REMARK 3 1 D 22 D 27 2 REMARK 3 2 A 60 A 67 2 REMARK 3 2 B 60 B 67 2 REMARK 3 2 C 60 C 67 2 REMARK 3 2 D 60 D 67 2 REMARK 3 3 A 71 A 77 4 REMARK 3 3 B 71 B 77 4 REMARK 3 3 C 71 C 77 4 REMARK 3 3 D 71 D 77 4 REMARK 3 4 A 80 A 86 2 REMARK 3 4 B 80 B 86 2 REMARK 3 4 C 80 C 86 2 REMARK 3 4 D 80 D 86 2 REMARK 3 5 A 90 A 101 2 REMARK 3 5 B 90 B 101 2 REMARK 3 5 C 90 C 101 2 REMARK 3 5 D 90 D 101 2 REMARK 3 6 A 106 A 113 2 REMARK 3 6 B 106 B 113 2 REMARK 3 6 C 106 C 113 2 REMARK 3 6 D 106 D 113 2 REMARK 3 7 A 116 A 122 2 REMARK 3 7 B 116 B 122 2 REMARK 3 7 C 116 C 122 2 REMARK 3 7 D 116 D 122 2 REMARK 3 8 A 125 A 131 2 REMARK 3 8 B 125 B 131 2 REMARK 3 8 C 125 C 131 2 REMARK 3 8 D 125 D 131 2 REMARK 3 9 A 136 A 142 2 REMARK 3 9 B 136 B 142 2 REMARK 3 9 C 136 C 142 2 REMARK 3 9 D 136 D 142 2 REMARK 3 10 A 6 A 21 4 REMARK 3 10 B 6 B 21 4 REMARK 3 10 C 6 C 21 4 REMARK 3 10 D 6 D 21 4 REMARK 3 11 A 27 A 59 4 REMARK 3 11 B 27 B 59 4 REMARK 3 11 C 27 C 59 4 REMARK 3 11 D 27 D 59 4 REMARK 3 12 A 68 A 70 6 REMARK 3 12 B 68 B 70 6 REMARK 3 12 C 68 C 70 6 REMARK 3 12 D 68 D 70 6 REMARK 3 13 A 78 A 79 6 REMARK 3 13 B 78 B 79 6 REMARK 3 13 C 78 C 79 6 REMARK 3 13 D 78 D 79 6 REMARK 3 14 A 87 A 89 6 REMARK 3 14 B 87 B 89 6 REMARK 3 14 C 87 C 89 6 REMARK 3 14 D 87 D 89 6 REMARK 3 15 A 102 A 105 6 REMARK 3 15 B 102 B 105 6 REMARK 3 15 C 102 C 105 6 REMARK 3 15 D 102 D 105 6 REMARK 3 16 A 114 A 115 6 REMARK 3 16 B 114 B 115 6 REMARK 3 16 C 114 C 115 6 REMARK 3 16 D 114 D 115 6 REMARK 3 17 A 123 A 124 6 REMARK 3 17 B 123 B 124 6 REMARK 3 17 C 123 C 124 6 REMARK 3 17 D 123 D 124 6 REMARK 3 18 A 132 A 135 6 REMARK 3 18 B 132 B 135 6 REMARK 3 18 C 132 C 135 6 REMARK 3 18 D 132 D 135 6 REMARK 3 19 A 143 A 197 5 REMARK 3 19 B 143 B 197 5 REMARK 3 19 C 143 C 197 5 REMARK 3 19 D 143 D 197 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 954 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 954 ; 0.10 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 954 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 954 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1725 ; 0.71 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1725 ; 1.20 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1725 ; 0.69 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 1725 ; 0.66 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 282 ; 0.98 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 282 ; 0.90 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 282 ; 0.74 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 282 ; 0.59 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 954 ; 0.11 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 954 ; 0.11 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 954 ; 0.09 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 954 ; 0.10 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1725 ; 0.76 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1725 ; 0.83 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1725 ; 0.54 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 1725 ; 0.69 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 282 ; 2.06 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 282 ; 2.61 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 282 ; 0.88 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 282 ; 2.97 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6730 -0.9870 19.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.0876 REMARK 3 T33: 0.0745 T12: 0.0125 REMARK 3 T13: -0.0270 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.0002 L22: 1.3336 REMARK 3 L33: 1.0936 L12: 0.0174 REMARK 3 L13: 0.3548 L23: -0.1216 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.1404 S13: 0.0206 REMARK 3 S21: 0.2321 S22: -0.0144 S23: -0.1809 REMARK 3 S31: -0.0130 S32: 0.1711 S33: 0.0403 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 197 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8320 -0.0310 1.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.0161 T22: 0.0666 REMARK 3 T33: 0.0980 T12: 0.0146 REMARK 3 T13: -0.0152 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.8535 L22: 0.9506 REMARK 3 L33: 0.9211 L12: 0.1145 REMARK 3 L13: 0.3239 L23: -0.1014 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: 0.0359 S13: 0.0402 REMARK 3 S21: -0.1343 S22: 0.0305 S23: 0.2212 REMARK 3 S31: -0.0153 S32: -0.1725 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 197 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2140 103.9480 58.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.0350 T22: 0.0081 REMARK 3 T33: 0.0573 T12: -0.0070 REMARK 3 T13: 0.0049 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.0268 L22: 0.6164 REMARK 3 L33: 0.8971 L12: 0.2839 REMARK 3 L13: 0.3187 L23: 0.0612 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: -0.0758 S13: -0.0278 REMARK 3 S21: 0.0670 S22: -0.0209 S23: -0.1540 REMARK 3 S31: 0.0504 S32: 0.0519 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 197 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4600 106.1380 35.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.0580 REMARK 3 T33: 0.0250 T12: -0.0334 REMARK 3 T13: 0.0132 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.9266 L22: 0.9101 REMARK 3 L33: 0.8150 L12: 0.3369 REMARK 3 L13: 0.3728 L23: 0.2309 REMARK 3 S TENSOR REMARK 3 S11: -0.0776 S12: 0.1524 S13: 0.0791 REMARK 3 S21: -0.1907 S22: 0.0553 S23: 0.0863 REMARK 3 S31: -0.0489 S32: -0.0627 S33: 0.0223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1NZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : LIQUID GALLIUM COOLED, BENT, REMARK 200 TRIANGULARY SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63969 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : 0.11700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.11200 REMARK 200 R SYM FOR SHELL (I) : 0.08500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1NYW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 4 MM NICL2,10 MM DTDP-D REMARK 280 -XYLOSE, 35% PEG 2000, PH 8.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 70.43300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLU C 3 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLU D 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NI NI B 9603 O HOH B 9656 1.28 REMARK 500 OG SER A 85 O HOH A 9077 1.58 REMARK 500 O HOH A 9016 O HOH A 9214 1.80 REMARK 500 OD2 ASP B 196 O HOH B 9634 1.87 REMARK 500 ND1 HIS B 76 O HOH B 9636 2.04 REMARK 500 O HOH D 9161 O HOH D 9163 2.07 REMARK 500 O HOH B 9677 O HOH B 9734 2.11 REMARK 500 O HOH A 9135 O HOH A 9215 2.11 REMARK 500 O HOH C 9808 O HOH C 9813 2.12 REMARK 500 O HOH A 9199 O HOH A 9216 2.14 REMARK 500 O HOH B 9632 O HOH B 9656 2.17 REMARK 500 OH TYR D 159 OE2 GLU D 181 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR B 2 O HOH A 9019 1655 1.30 REMARK 500 OE1 GLU A 16 O HOH B 9697 1455 1.74 REMARK 500 O HOH B 9654 O HOH D 9102 1545 1.79 REMARK 500 O HOH A 9035 O HOH C 9823 2546 2.03 REMARK 500 N THR B 2 O HOH A 9212 1655 2.06 REMARK 500 O HOH A 9035 O HOH C 9689 2546 2.13 REMARK 500 O HOH A 9035 O HOH C 9717 2546 2.17 REMARK 500 O HOH A 9185 O HOH C 9715 2546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 74 CA - C - N ANGL. DEV. = -16.6 DEGREES REMARK 500 GLY A 74 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 LEU A 75 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 ASP B 188 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 GLY C 74 CA - C - N ANGL. DEV. = -15.1 DEGREES REMARK 500 GLY C 74 O - C - N ANGL. DEV. = 10.4 DEGREES REMARK 500 LEU C 75 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 GLY D 74 CA - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 GLY D 74 O - C - N ANGL. DEV. = 11.4 DEGREES REMARK 500 LEU D 75 C - N - CA ANGL. DEV. = 17.1 DEGREES REMARK 500 LEU D 75 CB - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP D 188 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 -11.32 80.16 REMARK 500 LEU A 75 87.56 22.42 REMARK 500 ASP A 88 -159.35 -126.37 REMARK 500 ASN B 70 -1.34 71.13 REMARK 500 LEU B 75 78.06 32.61 REMARK 500 ASP B 88 -159.35 -122.41 REMARK 500 LEU B 171 -57.91 7.91 REMARK 500 PHE C 5 -56.06 -126.53 REMARK 500 ASN C 70 -5.32 74.46 REMARK 500 LEU C 75 74.13 48.31 REMARK 500 ASP C 88 -157.01 -120.14 REMARK 500 ASP C 114 -168.41 -122.56 REMARK 500 PHE D 5 -54.82 -128.66 REMARK 500 ASN D 70 -9.21 76.50 REMARK 500 LEU D 75 80.45 50.45 REMARK 500 ASP D 88 -158.75 -125.13 REMARK 500 ASP D 114 -166.84 -120.35 REMARK 500 ASN D 170 88.55 -150.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 74 LEU A 75 -125.29 REMARK 500 GLY B 74 LEU B 75 -124.03 REMARK 500 GLY C 74 LEU C 75 -138.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 74 -10.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 TDX B 9001 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C9602 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 52 OE2 REMARK 620 2 HOH B9620 O 86.4 REMARK 620 3 HOH B9632 O 86.8 84.2 REMARK 620 4 GLU C 52 OE1 81.7 79.5 160.5 REMARK 620 5 HOH C9772 O 171.0 92.4 101.9 89.3 REMARK 620 6 HOH C9814 O 91.8 171.7 103.8 92.2 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B9603 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B9620 O REMARK 620 2 HOH B9632 O 107.3 REMARK 620 3 NI C9602 NI 59.4 59.6 REMARK 620 4 NI C9602 NI 65.4 59.0 69.3 REMARK 620 5 HOH C9642 O 163.3 70.0 126.2 100.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 9602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 9603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDX B 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDX A 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDX C 9003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDX D 9004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NXM RELATED DB: PDB REMARK 900 APO STRUCTURE OF RMLC FROM STREPTOCCUS SUIS REMARK 900 RELATED ID: 1NYW RELATED DB: PDB REMARK 900 RMLC STRUCTURE FROM STREPTOCOCCUS SUIS 2 IN COMPLEX WITH DTDP-D- REMARK 900 GLUCOSE DBREF 1NZC A 1 197 UNP Q8GIQ0 Q8GIQ0_STRSU 1 197 DBREF 1NZC B 1 197 UNP Q8GIQ0 Q8GIQ0_STRSU 1 197 DBREF 1NZC C 1 197 UNP Q8GIQ0 Q8GIQ0_STRSU 1 197 DBREF 1NZC D 1 197 UNP Q8GIQ0 Q8GIQ0_STRSU 1 197 SEQRES 1 A 197 MET THR GLU ASN PHE PHE GLY LYS THR LEU ALA ALA ARG SEQRES 2 A 197 PRO VAL GLU ALA ILE PRO GLY MET LEU GLU PHE ASP ILE SEQRES 3 A 197 PRO VAL HIS GLY ASP ASN ARG GLY TRP PHE LYS GLU ASN SEQRES 4 A 197 PHE GLN LYS GLU LYS MET LEU PRO LEU GLY PHE PRO GLU SEQRES 5 A 197 SER PHE PHE ALA GLU GLY LYS LEU GLN ASN ASN VAL SER SEQRES 6 A 197 PHE SER ARG LYS ASN VAL LEU ARG GLY LEU HIS ALA GLU SEQRES 7 A 197 PRO TRP ASP LYS TYR ILE SER VAL ALA ASP GLY GLY LYS SEQRES 8 A 197 VAL LEU GLY THR TRP VAL ASP LEU ARG GLU GLY GLU THR SEQRES 9 A 197 PHE GLY ASN THR TYR GLN THR VAL ILE ASP ALA SER LYS SEQRES 10 A 197 SER ILE PHE VAL PRO ARG GLY VAL ALA ASN GLY PHE GLN SEQRES 11 A 197 VAL LEU SER ASP PHE VAL ALA TYR SER TYR LEU VAL ASN SEQRES 12 A 197 ASP TYR TRP ALA LEU GLU LEU LYS PRO LYS TYR ALA PHE SEQRES 13 A 197 VAL ASN TYR ALA ASP PRO SER LEU ASP ILE LYS TRP GLU SEQRES 14 A 197 ASN LEU GLU GLU ALA GLU VAL SER GLU ALA ASP GLU ASN SEQRES 15 A 197 HIS PRO PHE LEU LYS ASP VAL LYS PRO LEU ARG LYS GLU SEQRES 16 A 197 ASP LEU SEQRES 1 B 197 MET THR GLU ASN PHE PHE GLY LYS THR LEU ALA ALA ARG SEQRES 2 B 197 PRO VAL GLU ALA ILE PRO GLY MET LEU GLU PHE ASP ILE SEQRES 3 B 197 PRO VAL HIS GLY ASP ASN ARG GLY TRP PHE LYS GLU ASN SEQRES 4 B 197 PHE GLN LYS GLU LYS MET LEU PRO LEU GLY PHE PRO GLU SEQRES 5 B 197 SER PHE PHE ALA GLU GLY LYS LEU GLN ASN ASN VAL SER SEQRES 6 B 197 PHE SER ARG LYS ASN VAL LEU ARG GLY LEU HIS ALA GLU SEQRES 7 B 197 PRO TRP ASP LYS TYR ILE SER VAL ALA ASP GLY GLY LYS SEQRES 8 B 197 VAL LEU GLY THR TRP VAL ASP LEU ARG GLU GLY GLU THR SEQRES 9 B 197 PHE GLY ASN THR TYR GLN THR VAL ILE ASP ALA SER LYS SEQRES 10 B 197 SER ILE PHE VAL PRO ARG GLY VAL ALA ASN GLY PHE GLN SEQRES 11 B 197 VAL LEU SER ASP PHE VAL ALA TYR SER TYR LEU VAL ASN SEQRES 12 B 197 ASP TYR TRP ALA LEU GLU LEU LYS PRO LYS TYR ALA PHE SEQRES 13 B 197 VAL ASN TYR ALA ASP PRO SER LEU ASP ILE LYS TRP GLU SEQRES 14 B 197 ASN LEU GLU GLU ALA GLU VAL SER GLU ALA ASP GLU ASN SEQRES 15 B 197 HIS PRO PHE LEU LYS ASP VAL LYS PRO LEU ARG LYS GLU SEQRES 16 B 197 ASP LEU SEQRES 1 C 197 MET THR GLU ASN PHE PHE GLY LYS THR LEU ALA ALA ARG SEQRES 2 C 197 PRO VAL GLU ALA ILE PRO GLY MET LEU GLU PHE ASP ILE SEQRES 3 C 197 PRO VAL HIS GLY ASP ASN ARG GLY TRP PHE LYS GLU ASN SEQRES 4 C 197 PHE GLN LYS GLU LYS MET LEU PRO LEU GLY PHE PRO GLU SEQRES 5 C 197 SER PHE PHE ALA GLU GLY LYS LEU GLN ASN ASN VAL SER SEQRES 6 C 197 PHE SER ARG LYS ASN VAL LEU ARG GLY LEU HIS ALA GLU SEQRES 7 C 197 PRO TRP ASP LYS TYR ILE SER VAL ALA ASP GLY GLY LYS SEQRES 8 C 197 VAL LEU GLY THR TRP VAL ASP LEU ARG GLU GLY GLU THR SEQRES 9 C 197 PHE GLY ASN THR TYR GLN THR VAL ILE ASP ALA SER LYS SEQRES 10 C 197 SER ILE PHE VAL PRO ARG GLY VAL ALA ASN GLY PHE GLN SEQRES 11 C 197 VAL LEU SER ASP PHE VAL ALA TYR SER TYR LEU VAL ASN SEQRES 12 C 197 ASP TYR TRP ALA LEU GLU LEU LYS PRO LYS TYR ALA PHE SEQRES 13 C 197 VAL ASN TYR ALA ASP PRO SER LEU ASP ILE LYS TRP GLU SEQRES 14 C 197 ASN LEU GLU GLU ALA GLU VAL SER GLU ALA ASP GLU ASN SEQRES 15 C 197 HIS PRO PHE LEU LYS ASP VAL LYS PRO LEU ARG LYS GLU SEQRES 16 C 197 ASP LEU SEQRES 1 D 197 MET THR GLU ASN PHE PHE GLY LYS THR LEU ALA ALA ARG SEQRES 2 D 197 PRO VAL GLU ALA ILE PRO GLY MET LEU GLU PHE ASP ILE SEQRES 3 D 197 PRO VAL HIS GLY ASP ASN ARG GLY TRP PHE LYS GLU ASN SEQRES 4 D 197 PHE GLN LYS GLU LYS MET LEU PRO LEU GLY PHE PRO GLU SEQRES 5 D 197 SER PHE PHE ALA GLU GLY LYS LEU GLN ASN ASN VAL SER SEQRES 6 D 197 PHE SER ARG LYS ASN VAL LEU ARG GLY LEU HIS ALA GLU SEQRES 7 D 197 PRO TRP ASP LYS TYR ILE SER VAL ALA ASP GLY GLY LYS SEQRES 8 D 197 VAL LEU GLY THR TRP VAL ASP LEU ARG GLU GLY GLU THR SEQRES 9 D 197 PHE GLY ASN THR TYR GLN THR VAL ILE ASP ALA SER LYS SEQRES 10 D 197 SER ILE PHE VAL PRO ARG GLY VAL ALA ASN GLY PHE GLN SEQRES 11 D 197 VAL LEU SER ASP PHE VAL ALA TYR SER TYR LEU VAL ASN SEQRES 12 D 197 ASP TYR TRP ALA LEU GLU LEU LYS PRO LYS TYR ALA PHE SEQRES 13 D 197 VAL ASN TYR ALA ASP PRO SER LEU ASP ILE LYS TRP GLU SEQRES 14 D 197 ASN LEU GLU GLU ALA GLU VAL SER GLU ALA ASP GLU ASN SEQRES 15 D 197 HIS PRO PHE LEU LYS ASP VAL LYS PRO LEU ARG LYS GLU SEQRES 16 D 197 ASP LEU HET TDX A9002 34 HET NI B9603 1 HET TDX B9001 34 HET NI C9602 1 HET TDX C9003 34 HET TDX D9004 34 HETNAM TDX THYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE HETNAM NI NICKEL (II) ION FORMUL 5 TDX 4(C15 H24 N2 O15 P2) FORMUL 6 NI 2(NI 2+) FORMUL 11 HOH *874(H2 O) HELIX 1 1 LYS A 42 LEU A 46 1 5 HELIX 2 2 PRO A 47 GLY A 49 5 3 HELIX 3 3 PRO A 51 ALA A 56 5 6 HELIX 4 4 ALA A 147 TYR A 154 5 8 HELIX 5 5 SER A 177 HIS A 183 1 7 HELIX 6 6 PHE A 185 VAL A 189 5 5 HELIX 7 7 ARG A 193 LEU A 197 5 5 HELIX 8 8 LYS B 42 LEU B 46 1 5 HELIX 9 9 PRO B 47 GLY B 49 5 3 HELIX 10 10 PRO B 51 ALA B 56 5 6 HELIX 11 11 ALA B 147 TYR B 154 5 8 HELIX 12 12 ASN B 170 ALA B 174 5 5 HELIX 13 13 SER B 177 ASN B 182 1 6 HELIX 14 14 PHE B 185 VAL B 189 5 5 HELIX 15 15 ARG B 193 LEU B 197 5 5 HELIX 16 16 LYS C 42 LEU C 46 1 5 HELIX 17 17 PRO C 47 GLY C 49 5 3 HELIX 18 18 PRO C 51 ALA C 56 5 6 HELIX 19 19 ALA C 147 TYR C 154 5 8 HELIX 20 20 SER C 177 ASN C 182 1 6 HELIX 21 21 PHE C 185 VAL C 189 5 5 HELIX 22 22 ARG C 193 LEU C 197 5 5 HELIX 23 23 LYS D 42 LEU D 46 1 5 HELIX 24 24 PRO D 51 ALA D 56 5 6 HELIX 25 25 LEU D 150 TYR D 154 5 5 HELIX 26 26 SER D 177 ASN D 182 1 6 HELIX 27 27 PHE D 185 VAL D 189 5 5 HELIX 28 28 ARG D 193 LEU D 197 5 5 SHEET 1 A 8 ALA A 11 PRO A 14 0 SHEET 2 A 8 LEU A 22 ASP A 25 -1 O GLU A 23 N ARG A 13 SHEET 3 A 8 LYS A 117 VAL A 121 -1 O SER A 118 N PHE A 24 SHEET 4 A 8 LYS A 82 VAL A 86 -1 N LYS A 82 O VAL A 121 SHEET 5 A 8 PHE A 135 VAL A 142 -1 O LEU A 141 N TYR A 83 SHEET 6 A 8 GLN A 61 ARG A 68 -1 N SER A 65 O TYR A 138 SHEET 7 A 8 GLY B 34 GLN B 41 -1 O PHE B 40 N ASN A 62 SHEET 8 A 8 VAL B 28 ASP B 31 -1 N HIS B 29 O PHE B 36 SHEET 1 B 8 VAL A 28 ASP A 31 0 SHEET 2 B 8 GLY A 34 GLN A 41 -1 O PHE A 36 N HIS A 29 SHEET 3 B 8 GLN B 61 ARG B 68 -1 O ASN B 62 N PHE A 40 SHEET 4 B 8 PHE B 135 VAL B 142 -1 O TYR B 138 N SER B 65 SHEET 5 B 8 LYS B 82 VAL B 86 -1 N TYR B 83 O LEU B 141 SHEET 6 B 8 LYS B 117 VAL B 121 -1 O VAL B 121 N LYS B 82 SHEET 7 B 8 LEU B 22 ASP B 25 -1 N PHE B 24 O SER B 118 SHEET 8 B 8 ALA B 11 PRO B 14 -1 N ARG B 13 O GLU B 23 SHEET 1 C 5 THR A 108 ILE A 113 0 SHEET 2 C 5 VAL A 92 ASP A 98 -1 N GLY A 94 O THR A 111 SHEET 3 C 5 VAL A 125 VAL A 131 -1 O GLN A 130 N LEU A 93 SHEET 4 C 5 LEU A 72 ALA A 77 -1 N ARG A 73 O PHE A 129 SHEET 5 C 5 ALA A 155 PHE A 156 -1 O ALA A 155 N ALA A 77 SHEET 1 D 5 THR B 108 ILE B 113 0 SHEET 2 D 5 VAL B 92 ASP B 98 -1 N GLY B 94 O THR B 111 SHEET 3 D 5 VAL B 125 VAL B 131 -1 O GLN B 130 N LEU B 93 SHEET 4 D 5 LEU B 72 ALA B 77 -1 N HIS B 76 O ASN B 127 SHEET 5 D 5 ALA B 155 PHE B 156 -1 O ALA B 155 N ALA B 77 SHEET 1 E 8 ALA C 11 PRO C 14 0 SHEET 2 E 8 LEU C 22 ASP C 25 -1 O GLU C 23 N ARG C 13 SHEET 3 E 8 LYS C 117 VAL C 121 -1 O SER C 118 N PHE C 24 SHEET 4 E 8 LYS C 82 VAL C 86 -1 N LYS C 82 O VAL C 121 SHEET 5 E 8 PHE C 135 VAL C 142 -1 O LEU C 141 N TYR C 83 SHEET 6 E 8 GLN C 61 ARG C 68 -1 N SER C 65 O TYR C 138 SHEET 7 E 8 GLY D 34 GLN D 41 -1 O LYS D 37 N VAL C 64 SHEET 8 E 8 VAL D 28 ASP D 31 -1 N HIS D 29 O PHE D 36 SHEET 1 F 8 VAL C 28 ASP C 31 0 SHEET 2 F 8 GLY C 34 GLN C 41 -1 O PHE C 36 N HIS C 29 SHEET 3 F 8 GLN D 61 ARG D 68 -1 O VAL D 64 N LYS C 37 SHEET 4 F 8 PHE D 135 VAL D 142 -1 O TYR D 138 N SER D 65 SHEET 5 F 8 LYS D 82 VAL D 86 -1 N TYR D 83 O LEU D 141 SHEET 6 F 8 LYS D 117 VAL D 121 -1 O VAL D 121 N LYS D 82 SHEET 7 F 8 LEU D 22 ASP D 25 -1 N PHE D 24 O SER D 118 SHEET 8 F 8 ALA D 11 PRO D 14 -1 N ARG D 13 O GLU D 23 SHEET 1 G 5 THR C 108 ILE C 113 0 SHEET 2 G 5 VAL C 92 ASP C 98 -1 N GLY C 94 O THR C 111 SHEET 3 G 5 VAL C 125 VAL C 131 -1 O GLN C 130 N LEU C 93 SHEET 4 G 5 LEU C 72 ALA C 77 -1 N HIS C 76 O ASN C 127 SHEET 5 G 5 ALA C 155 PHE C 156 -1 O ALA C 155 N ALA C 77 SHEET 1 H 5 THR D 108 ILE D 113 0 SHEET 2 H 5 VAL D 92 ASP D 98 -1 N GLY D 94 O THR D 111 SHEET 3 H 5 VAL D 125 VAL D 131 -1 O ALA D 126 N VAL D 97 SHEET 4 H 5 LEU D 72 ALA D 77 -1 N HIS D 76 O ASN D 127 SHEET 5 H 5 ALA D 155 PHE D 156 -1 O ALA D 155 N ALA D 77 LINK OE2 GLU B 52 NI NI C9602 1566 1555 2.23 LINK NI NI B9603 O HOH B9620 1555 1555 2.09 LINK NI NI B9603 O HOH B9632 1555 1555 1.87 LINK NI NI B9603 NI NI C9602 1555 1544 2.66 LINK NI NI B9603 NI NI C9602 1566 1555 2.66 LINK NI NI B9603 O HOH C9642 1555 1544 2.50 LINK O HOH B9620 NI NI C9602 1566 1555 2.41 LINK O HOH B9632 NI NI C9602 1566 1555 2.35 LINK OE1 GLU C 52 NI NI C9602 1555 1555 2.24 LINK NI NI C9602 O HOH C9772 1555 1555 2.00 LINK NI NI C9602 O HOH C9814 1555 1555 2.06 SITE 1 AC1 7 GLU B 52 NI B9603 HOH B9620 HOH B9632 SITE 2 AC1 7 GLU C 52 HOH C9772 HOH C9814 SITE 1 AC2 7 HOH B9620 HOH B9632 HOH B9656 GLY C 49 SITE 2 AC2 7 NI C9602 HOH C9642 HOH C9772 SITE 1 AC3 15 ARG A 33 PHE A 36 GLU A 38 HOH A9064 SITE 2 AC3 15 GLN B 61 ARG B 73 GLU B 78 ASN B 127 SITE 3 AC3 15 TYR B 140 TRP B 146 HOH B9623 HOH B9624 SITE 4 AC3 15 HOH B9628 HOH B9636 HOH B9769 SITE 1 AC4 22 GLN A 61 ASN A 63 ARG A 73 HIS A 76 SITE 2 AC4 22 GLU A 78 LYS A 82 ASN A 127 TYR A 140 SITE 3 AC4 22 TRP A 146 HOH A9008 HOH A9010 HOH A9026 SITE 4 AC4 22 HOH A9028 HOH A9036 HOH A9040 HOH A9046 SITE 5 AC4 22 HOH A9071 HOH A9072 HOH A9096 ARG B 33 SITE 6 AC4 22 PHE B 36 GLU B 38 SITE 1 AC5 22 GLN C 61 ARG C 73 HIS C 76 GLU C 78 SITE 2 AC5 22 LYS C 82 ASN C 127 TYR C 140 TRP C 146 SITE 3 AC5 22 HOH C9620 HOH C9626 HOH C9647 HOH C9650 SITE 4 AC5 22 HOH C9657 HOH C9676 HOH C9682 HOH C9687 SITE 5 AC5 22 HOH C9752 HOH C9777 HOH C9782 ARG D 33 SITE 6 AC5 22 PHE D 36 GLU D 38 SITE 1 AC6 23 HIS C 29 ARG C 33 PHE C 36 GLU C 38 SITE 2 AC6 23 GLN D 61 ARG D 73 HIS D 76 GLU D 78 SITE 3 AC6 23 LYS D 82 ASN D 127 TYR D 140 TRP D 146 SITE 4 AC6 23 HOH D9009 HOH D9011 HOH D9021 HOH D9023 SITE 5 AC6 23 HOH D9035 HOH D9046 HOH D9053 HOH D9075 SITE 6 AC6 23 HOH D9079 HOH D9104 HOH D9168 CRYST1 50.850 140.866 53.699 90.00 92.72 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019666 0.000000 0.000933 0.00000 SCALE2 0.000000 0.007099 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018643 0.00000