PDB Short entry for 1O6B HEADER TRANSFERASE 03-NOV-03 1O6B TITLE CRYSTAL STRUCTURE OF PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PANTETHEINE-PHOSPHATE ADENYLYLTRANSFERASE, PPAT, DEPHOSPHO- COMPND 5 COA PYROPHOSPHORYLASE; COMPND 6 EC: 2.7.7.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: COAD, BSU15020; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR STRUCTURAL GENOMIX REVDAT 7 27-DEC-23 1O6B 1 REMARK DBREF SEQADV LINK REVDAT 6 04-OCT-17 1O6B 1 REMARK REVDAT 5 13-JUL-11 1O6B 1 VERSN REVDAT 4 24-FEB-09 1O6B 1 VERSN REVDAT 3 30-AUG-05 1O6B 1 JRNL REVDAT 2 30-DEC-03 1O6B 1 JRNL REVDAT 1 25-NOV-03 1O6B 0 JRNL AUTH J.BADGER,J.M.SAUDER,J.M.ADAMS,S.ANTONYSAMY,K.BAIN, JRNL AUTH 2 M.G.BERGSEID,S.G.BUCHANAN,M.D.BUCHANAN,Y.BATIYENKO, JRNL AUTH 3 J.A.CHRISTOPHER,S.EMTAGE,A.EROSHKINA,I.FEIL,E.B.FURLONG, JRNL AUTH 4 K.S.GAJIWALA,X.GAO,D.HE,J.HENDLE,A.HUBER,K.HODA,P.KEARINS, JRNL AUTH 5 C.KISSINGER,B.LAUBERT,H.A.LEWIS,J.LIN,K.LOOMIS,D.LORIMER, JRNL AUTH 6 G.LOUIE,M.MALETIC,C.D.MARSH,I.MILLER,J.MOLINARI, JRNL AUTH 7 H.J.MULLER-DIECKMANN,J.M.NEWMAN,B.W.NOLAND,B.PAGARIGAN, JRNL AUTH 8 F.PARK,T.S.PEAT,K.W.POST,S.RADOJICIC,A.RAMOS,R.ROMERO, JRNL AUTH 9 M.E.RUTTER,W.E.SANDERSON,K.D.SCHWINN,J.TRESSER,J.WINHOVEN, JRNL AUTH10 T.A.WRIGHT,L.WU,J.XU,T.J.HARRIS JRNL TITL STRUCTURAL ANALYSIS OF A SET OF PROTEINS RESULTING FROM A JRNL TITL 2 BACTERIAL GENOMICS PROJECT JRNL REF PROTEINS V. 60 787 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 16021622 JRNL DOI 10.1002/PROT.20541 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 4.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 695 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1254 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; NULL REMARK 3 ANGLE DISTANCE (A) : 2.260 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.012 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.180 ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.706 ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.859 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.284 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 3.499 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.648 ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000001849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA, TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13895 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 31.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 42.20 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 43.20 REMARK 200 R MERGE FOR SHELL (I) : 0.07700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SE-MET SAD PHASING REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.71000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.71000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 57.71000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 57.71000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 57.71000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 57.71000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 57.71000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 57.71000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 57.71000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 57.71000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 57.71000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 57.71000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 57.71000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 57.71000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 86.56500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 28.85500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 28.85500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 86.56500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 86.56500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 86.56500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 28.85500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 28.85500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 86.56500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 28.85500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 86.56500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 28.85500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 86.56500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 28.85500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 28.85500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 28.85500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 86.56500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 28.85500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 86.56500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 86.56500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 86.56500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 28.85500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 28.85500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 86.56500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 86.56500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 28.85500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 28.85500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 28.85500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 28.85500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 86.56500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 28.85500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 86.56500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 28.85500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 86.56500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 86.56500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 86.56500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -198.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 230.84000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -57.71000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 173.13000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 57.71000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 173.13000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 230.84000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 201.98500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 201.98500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 201.98500 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 259.69500 REMARK 350 BIOMT2 5 0.000000 0.000000 1.000000 -28.85500 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 28.85500 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 28.85500 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 144.27500 REMARK 350 BIOMT3 6 1.000000 0.000000 0.000000 -28.85500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 172 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 LEU A 37 CD1 CD2 REMARK 470 ASN A 39 CG OD1 ND2 REMARK 470 SER A 40 OG REMARK 470 SER A 41 OG REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 49 CD OE1 OE2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 GLU A 97 CD OE1 OE2 REMARK 470 LEU A 127 CG CD1 CD2 REMARK 470 ARG A 137 CZ NH1 NH2 REMARK 470 GLU A 144 OE1 OE2 REMARK 470 GLN A 160 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 88 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 74.70 -100.80 REMARK 500 PHE A 11 70.52 38.95 REMARK 500 ASN A 39 149.36 -37.81 REMARK 500 SER A 40 150.95 179.65 REMARK 500 ASP A 110 95.20 -160.96 REMARK 500 ASN A 122 -158.83 -155.81 REMARK 500 SER A 163 21.69 -67.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 171 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 139 OD1 REMARK 620 2 HOH A 174 O 94.4 REMARK 620 3 HOH A 174 O 103.7 152.8 REMARK 620 4 HOH A 218 O 116.6 101.6 88.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 173 DBREF 1O6B A 2 161 UNP O34797 COAD_BACSU 2 161 SEQADV 1O6B MSE A 1 UNP O34797 CLONING ARTIFACT SEQADV 1O6B ARG A 79 UNP O34797 LYS 79 VARIANT SEQADV 1O6B MSE A 100 UNP O34797 MET 100 MODIFIED RESIDUE SEQADV 1O6B MSE A 118 UNP O34797 MET 118 MODIFIED RESIDUE SEQADV 1O6B MSE A 119 UNP O34797 MET 119 MODIFIED RESIDUE SEQADV 1O6B ALA A 120 UNP O34797 THR 120 VARIANT SEQADV 1O6B ASP A 139 UNP O34797 ASN 139 VARIANT SEQADV 1O6B GLY A 162 UNP O34797 CLONING ARTIFACT SEQADV 1O6B SER A 163 UNP O34797 CLONING ARTIFACT SEQADV 1O6B HIS A 164 UNP O34797 CLONING ARTIFACT SEQADV 1O6B HIS A 165 UNP O34797 CLONING ARTIFACT SEQADV 1O6B HIS A 166 UNP O34797 CLONING ARTIFACT SEQADV 1O6B HIS A 167 UNP O34797 CLONING ARTIFACT SEQADV 1O6B HIS A 168 UNP O34797 CLONING ARTIFACT SEQADV 1O6B HIS A 169 UNP O34797 CLONING ARTIFACT SEQRES 1 A 169 MSE ALA SER ILE ALA VAL CYS PRO GLY SER PHE ASP PRO SEQRES 2 A 169 VAL THR TYR GLY HIS LEU ASP ILE ILE LYS ARG GLY ALA SEQRES 3 A 169 HIS ILE PHE GLU GLN VAL TYR VAL CYS VAL LEU ASN ASN SEQRES 4 A 169 SER SER LYS LYS PRO LEU PHE SER VAL GLU GLU ARG CYS SEQRES 5 A 169 GLU LEU LEU ARG GLU VAL THR LYS ASP ILE PRO ASN ILE SEQRES 6 A 169 THR VAL GLU THR SER GLN GLY LEU LEU ILE ASP TYR ALA SEQRES 7 A 169 ARG ARG LYS ASN ALA LYS ALA ILE LEU ARG GLY LEU ARG SEQRES 8 A 169 ALA VAL SER ASP PHE GLU TYR GLU MSE GLN GLY THR SER SEQRES 9 A 169 VAL ASN ARG VAL LEU ASP GLU SER ILE GLU THR PHE PHE SEQRES 10 A 169 MSE MSE ALA ASN ASN GLN TYR SER PHE LEU SER SER SER SEQRES 11 A 169 ILE VAL LYS GLU VAL ALA ARG TYR ASP GLY SER VAL SER SEQRES 12 A 169 GLU PHE VAL PRO PRO GLU VAL GLU LEU ALA LEU GLN GLN SEQRES 13 A 169 LYS PHE ARG GLN GLY GLY SER HIS HIS HIS HIS HIS HIS MODRES 1O6B MSE A 100 MET SELENOMETHIONINE MODRES 1O6B MSE A 118 MET SELENOMETHIONINE MODRES 1O6B MSE A 119 MET SELENOMETHIONINE HET MSE A 100 8 HET MSE A 118 8 HET MSE A 119 8 HET PO4 A 170 5 HET MG A 171 1 HET CL A 172 1 HET ADP A 173 27 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 PO4 O4 P 3- FORMUL 3 MG MG 2+ FORMUL 4 CL CL 1- FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 HOH *113(H2 O) HELIX 1 1 THR A 15 PHE A 29 1 15 HELIX 2 2 SER A 47 LYS A 60 1 14 HELIX 3 3 LEU A 73 LYS A 81 1 9 HELIX 4 4 ALA A 92 SER A 94 5 3 HELIX 5 5 ASP A 95 ASP A 110 1 16 HELIX 6 6 SER A 128 TYR A 138 1 11 HELIX 7 7 PRO A 147 GLN A 160 1 14 SHEET 1 A 5 ILE A 65 THR A 69 0 SHEET 2 A 5 GLN A 31 VAL A 36 1 N VAL A 34 O GLU A 68 SHEET 3 A 5 ILE A 4 GLY A 9 1 N CYS A 7 O TYR A 33 SHEET 4 A 5 ALA A 85 LEU A 90 1 O LEU A 87 N VAL A 6 SHEET 5 A 5 GLU A 114 MSE A 119 1 O PHE A 116 N ILE A 86 LINK C GLU A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N GLN A 101 1555 1555 1.33 LINK C PHE A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N MSE A 119 1555 1555 1.31 LINK C MSE A 119 N ALA A 120 1555 1555 1.32 LINK OD1 ASP A 139 MG MG A 171 13547 1555 1.81 LINK MG MG A 171 O HOH A 174 1555 1555 2.29 LINK MG MG A 171 O HOH A 174 1555 13547 2.38 LINK MG MG A 171 O HOH A 218 1555 1555 2.10 CISPEP 1 ASP A 12 PRO A 13 0 -0.50 SITE 1 AC1 7 HIS A 18 ARG A 91 SER A 128 SER A 129 SITE 2 AC1 7 ADP A 173 HOH A 226 HOH A 284 SITE 1 AC2 3 ASP A 139 HOH A 174 HOH A 218 SITE 1 AC3 2 SER A 3 LYS A 84 SITE 1 AC4 14 GLY A 9 SER A 10 PHE A 11 GLY A 17 SITE 2 AC4 14 HIS A 18 ILE A 21 ARG A 88 GLY A 89 SITE 3 AC4 14 ARG A 91 ALA A 120 TYR A 124 LEU A 127 SITE 4 AC4 14 PO4 A 170 HOH A 243 CRYST1 115.420 115.420 115.420 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008664 0.00000