PDB Short entry for 1O7K HEADER SH3 DOMAIN 07-NOV-02 1O7K TITLE HUMAN P47 PX DOMAIN COMPLEX WITH SULPHATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL CYTOSOL FACTOR 1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: PX DOMAIN, RESIDUES 1-123; COMPND 5 SYNONYM: NCF-1, NEUTROPHIL NADPH OXIDASE FACTOR 1, P47-PHOX, 47 KDA COMPND 6 NEUTROPHIL OXIDASE FACTOR, NCF-47K, 47 KDA AUTOSOMAL CHRONIC COMPND 7 GRANULOMATOUS DISEASE PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BLOOD; SOURCE 6 CELL: NEUTROPHIL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJL KEYWDS P47, NADPH OXIDASE, PX DOMAIN, PHOSPHOLIPID-BINDING, KEYWDS 2 PHOSPHOINOSITIDE-BINDING, SH3 DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR D.KARATHANASSIS,J.BRAVO,O.PERISIC,C.M.PACOLD,R.L.WILLIAMS REVDAT 3 24-JAN-18 1O7K 1 SOURCE REVDAT 2 24-FEB-09 1O7K 1 VERSN REVDAT 1 20-NOV-02 1O7K 0 JRNL AUTH D.KARATHANASSIS,R.V.STAHELIN,J.BRAVO,O.PERISIC,C.M.PACOLD, JRNL AUTH 2 W.CHO,R.L.WILLIAMS JRNL TITL BINDING OF THE PX DOMAIN OF P47PHOX TO PHOSPHATIDYLINOSITOL JRNL TITL 2 3.4-BISPHOSPHATE AND PHOSPHATIDIC ACID IS MASKED BY AN JRNL TITL 3 INTRAMOLECULAR INTERACTION JRNL REF EMBO J. V. 21 5057 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 12356722 JRNL DOI 10.1093/EMBOJ/CDF519 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 29890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1494 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3063 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1290011197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.021409, 1.021248 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 168658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 77.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP, SHARP, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM SULPHATE, 0.1M TRIS PH REMARK 280 8.5, 12% GLYCEROL, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.11650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.08750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.00500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.11650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.08750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.00500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.11650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.08750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.00500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.11650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.08750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.00500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C2040 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 NCF2, NCF1, AND A MEMBRANE BOUND CYTOCHROME B558 ARE REMARK 400 REQUIRED FOR ACTIVATION OF THE LATENT NADPH OXIDASE (NECESSARY REMARK 400 FOR SUPEROXIDE PRODUCTION). REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 MSE B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 ASP B 3 REMARK 465 MSE C -7 REMARK 465 ALA C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 MSE C 1 REMARK 465 GLY C 2 REMARK 465 ASP C 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE B 102 SE MSE B 102 CE -0.590 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 82 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 82 CB - CG - OD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG B 90 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 121 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG C 85 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG C 85 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 65 -76.42 -79.12 REMARK 500 LEU B 35 -18.09 74.16 REMARK 500 SER B 36 143.56 -35.28 REMARK 500 ILE B 65 -81.80 -99.06 REMARK 500 ASP B 82 -77.03 -78.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1126 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GD5 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE PX DOMAIN FROM HUMAN P47PHOXNADPH OXIDASE REMARK 900 RELATED ID: 1K4U RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE C-TERMINAL SH3 DOMAIN OF P67PHOXCOMPLEXED REMARK 900 WITH THE C- TERMINAL TAIL REGION OF P47PHOX REMARK 999 REMARK 999 SEQUENCE REMARK 999 MAHHHHHH N-TERMINAL AFFINITY TAG DBREF 1O7K A -7 0 PDB 1O7K 1O7K -7 0 DBREF 1O7K A 1 123 UNP P14598 NCF1_HUMAN 1 123 DBREF 1O7K B -7 0 PDB 1O7K 1O7K -7 0 DBREF 1O7K B 1 123 UNP P14598 NCF1_HUMAN 1 123 DBREF 1O7K C -7 0 PDB 1O7K 1O7K -7 0 DBREF 1O7K C 1 123 UNP P14598 NCF1_HUMAN 1 123 SEQRES 1 A 131 MSE ALA HIS HIS HIS HIS HIS HIS MSE GLY ASP THR PHE SEQRES 2 A 131 ILE ARG HIS ILE ALA LEU LEU GLY PHE GLU LYS ARG PHE SEQRES 3 A 131 VAL PRO SER GLN HIS TYR VAL TYR MSE PHE LEU VAL LYS SEQRES 4 A 131 TRP GLN ASP LEU SER GLU LYS VAL VAL TYR ARG ARG PHE SEQRES 5 A 131 THR GLU ILE TYR GLU PHE HIS LYS THR LEU LYS GLU MSE SEQRES 6 A 131 PHE PRO ILE GLU ALA GLY ALA ILE ASN PRO GLU ASN ARG SEQRES 7 A 131 ILE ILE PRO HIS LEU PRO ALA PRO LYS TRP PHE ASP GLY SEQRES 8 A 131 GLN ARG ALA ALA GLU ASN ARG GLN GLY THR LEU THR GLU SEQRES 9 A 131 TYR CYS SER THR LEU MSE SER LEU PRO THR LYS ILE SER SEQRES 10 A 131 ARG CYS PRO HIS LEU LEU ASP PHE PHE LYS VAL ARG PRO SEQRES 11 A 131 ASP SEQRES 1 B 131 MSE ALA HIS HIS HIS HIS HIS HIS MSE GLY ASP THR PHE SEQRES 2 B 131 ILE ARG HIS ILE ALA LEU LEU GLY PHE GLU LYS ARG PHE SEQRES 3 B 131 VAL PRO SER GLN HIS TYR VAL TYR MSE PHE LEU VAL LYS SEQRES 4 B 131 TRP GLN ASP LEU SER GLU LYS VAL VAL TYR ARG ARG PHE SEQRES 5 B 131 THR GLU ILE TYR GLU PHE HIS LYS THR LEU LYS GLU MSE SEQRES 6 B 131 PHE PRO ILE GLU ALA GLY ALA ILE ASN PRO GLU ASN ARG SEQRES 7 B 131 ILE ILE PRO HIS LEU PRO ALA PRO LYS TRP PHE ASP GLY SEQRES 8 B 131 GLN ARG ALA ALA GLU ASN ARG GLN GLY THR LEU THR GLU SEQRES 9 B 131 TYR CYS SER THR LEU MSE SER LEU PRO THR LYS ILE SER SEQRES 10 B 131 ARG CYS PRO HIS LEU LEU ASP PHE PHE LYS VAL ARG PRO SEQRES 11 B 131 ASP SEQRES 1 C 131 MSE ALA HIS HIS HIS HIS HIS HIS MSE GLY ASP THR PHE SEQRES 2 C 131 ILE ARG HIS ILE ALA LEU LEU GLY PHE GLU LYS ARG PHE SEQRES 3 C 131 VAL PRO SER GLN HIS TYR VAL TYR MSE PHE LEU VAL LYS SEQRES 4 C 131 TRP GLN ASP LEU SER GLU LYS VAL VAL TYR ARG ARG PHE SEQRES 5 C 131 THR GLU ILE TYR GLU PHE HIS LYS THR LEU LYS GLU MSE SEQRES 6 C 131 PHE PRO ILE GLU ALA GLY ALA ILE ASN PRO GLU ASN ARG SEQRES 7 C 131 ILE ILE PRO HIS LEU PRO ALA PRO LYS TRP PHE ASP GLY SEQRES 8 C 131 GLN ARG ALA ALA GLU ASN ARG GLN GLY THR LEU THR GLU SEQRES 9 C 131 TYR CYS SER THR LEU MSE SER LEU PRO THR LYS ILE SER SEQRES 10 C 131 ARG CYS PRO HIS LEU LEU ASP PHE PHE LYS VAL ARG PRO SEQRES 11 C 131 ASP MODRES 1O7K MSE A 1 MET SELENOMETHIONINE MODRES 1O7K MSE A 27 MET SELENOMETHIONINE MODRES 1O7K MSE A 57 MET SELENOMETHIONINE MODRES 1O7K MSE A 102 MET SELENOMETHIONINE MODRES 1O7K MSE B 27 MET SELENOMETHIONINE MODRES 1O7K MSE B 57 MET SELENOMETHIONINE MODRES 1O7K MSE B 102 MET SELENOMETHIONINE MODRES 1O7K MSE C 27 MET SELENOMETHIONINE MODRES 1O7K MSE C 57 MET SELENOMETHIONINE MODRES 1O7K MSE C 102 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 27 8 HET MSE A 57 8 HET MSE A 102 8 HET MSE B 27 8 HET MSE B 57 8 HET MSE B 102 8 HET MSE C 27 8 HET MSE C 57 8 HET MSE C 102 8 HET SO4 A1124 5 HET SO4 A1125 5 HET SO4 B1124 5 HET SO4 B1125 5 HET SO4 C1124 5 HET SO4 C1125 5 HET SO4 C1126 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 4 SO4 7(O4 S 2-) FORMUL 11 HOH *194(H2 O) HELIX 1 1 ARG A 43 GLU A 56 1 14 HELIX 2 2 ASN A 66 ARG A 70 5 5 HELIX 3 3 ALA A 77 PHE A 81 5 5 HELIX 4 4 ARG A 85 SER A 103 1 19 HELIX 5 5 PRO A 105 ARG A 110 1 6 HELIX 6 6 CYS A 111 LYS A 119 1 9 HELIX 7 7 ARG B 43 PHE B 58 1 16 HELIX 8 8 PHE B 58 GLY B 63 1 6 HELIX 9 9 ASN B 66 ARG B 70 5 5 HELIX 10 10 ALA B 77 PHE B 81 5 5 HELIX 11 11 ARG B 85 SER B 103 1 19 HELIX 12 12 PRO B 105 ARG B 110 1 6 HELIX 13 13 CYS B 111 LYS B 119 1 9 HELIX 14 14 ARG C 43 PHE C 58 1 16 HELIX 15 15 PHE C 58 GLY C 63 1 6 HELIX 16 16 ASN C 66 ARG C 70 5 5 HELIX 17 17 ALA C 77 PHE C 81 5 5 HELIX 18 18 ARG C 85 LEU C 104 1 20 HELIX 19 19 PRO C 105 ARG C 110 1 6 HELIX 20 20 CYS C 111 LYS C 119 1 9 SHEET 1 AA 3 ILE A 6 ARG A 17 0 SHEET 2 AA 3 HIS A 23 TRP A 32 -1 O HIS A 23 N ARG A 17 SHEET 3 AA 3 GLU A 37 ARG A 42 -1 O LYS A 38 N VAL A 30 SHEET 1 BA 3 ILE B 6 ARG B 17 0 SHEET 2 BA 3 HIS B 23 TRP B 32 -1 O HIS B 23 N ARG B 17 SHEET 3 BA 3 GLU B 37 ARG B 42 -1 O LYS B 38 N VAL B 30 SHEET 1 CA 3 ILE C 6 ARG C 17 0 SHEET 2 CA 3 HIS C 23 TRP C 32 -1 O HIS C 23 N ARG C 17 SHEET 3 CA 3 GLU C 37 ARG C 42 -1 O LYS C 38 N VAL C 30 LINK C HIS A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N GLY A 2 1555 1555 1.35 LINK C TYR A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N PHE A 28 1555 1555 1.33 LINK C GLU A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N PHE A 58 1555 1555 1.33 LINK C LEU A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N SER A 103 1555 1555 1.33 LINK C TYR B 26 N MSE B 27 1555 1555 1.32 LINK C MSE B 27 N PHE B 28 1555 1555 1.31 LINK C GLU B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N PHE B 58 1555 1555 1.33 LINK C LEU B 101 N MSE B 102 1555 1555 1.33 LINK C MSE B 102 N SER B 103 1555 1555 1.32 LINK C TYR C 26 N MSE C 27 1555 1555 1.32 LINK C MSE C 27 N PHE C 28 1555 1555 1.33 LINK C GLU C 56 N MSE C 57 1555 1555 1.33 LINK C MSE C 57 N PHE C 58 1555 1555 1.33 LINK C LEU C 101 N MSE C 102 1555 1555 1.33 LINK C MSE C 102 N SER C 103 1555 1555 1.34 CISPEP 1 VAL A 19 PRO A 20 0 -2.48 CISPEP 2 VAL B 19 PRO B 20 0 5.73 CISPEP 3 VAL C 19 PRO C 20 0 5.53 SITE 1 AC1 7 ARG A 43 PHE A 44 THR A 45 ARG A 90 SITE 2 AC1 7 HOH A2019 HOH A2067 HOH A2068 SITE 1 AC2 7 HIS A 51 LYS A 55 ARG A 70 HIS A 74 SITE 2 AC2 7 LEU A 75 HOH A2033 LYS C 31 SITE 1 AC3 6 ARG B 43 PHE B 44 THR B 45 ARG B 90 SITE 2 AC3 6 HOH B2010 HOH B2082 SITE 1 AC4 8 LYS A 31 HIS B 51 LYS B 55 ARG B 70 SITE 2 AC4 8 HIS B 74 LEU B 75 HOH B2043 HOH B2083 SITE 1 AC5 5 ARG C 43 PHE C 44 THR C 45 HOH C2010 SITE 2 AC5 5 HOH C2041 SITE 1 AC6 7 LYS B 31 HIS C 51 LYS C 55 ARG C 70 SITE 2 AC6 7 HIS C 74 LEU C 75 HOH C2042 SITE 1 AC7 5 ASP A 34 LYS B 16 GLN C 84 ARG C 85 SITE 2 AC7 5 HOH C2043 CRYST1 74.233 92.175 144.010 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013471 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006944 0.00000 MTRIX1 1 0.618450 0.467982 0.631279 3.61100 1 MTRIX2 1 -0.438825 -0.460737 0.771462 40.49900 1 MTRIX3 1 0.651884 -0.754131 -0.079581 -8.84100 1 MTRIX1 2 0.683484 -0.405776 0.606791 -16.10600 1 MTRIX2 2 0.388947 -0.500989 -0.773130 26.83400 1 MTRIX3 2 0.617714 0.764431 -0.184593 30.74900 1