PDB Short entry for 1OAL HEADER OXIDOREDUCTASE 15-JAN-03 1OAL TITLE ACTIVE SITE COPPER AND ZINC IONS MODULATE THE QUATERNARY STRUCTURE OF TITLE 2 PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTOBACTERIUM LEIOGNATHI; SOURCE 3 ORGANISM_TAXID: 658; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: 71/18; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PEMBL18 KEYWDS OXIDOREDUCTASE, PROKARYOTIC CU, ZN SUPEROXIDE DISMUTASE, PROTEIN- KEYWDS 2 SUBUNIT INTERACTION RECOGNITION, PROTEIN ELECTROSTATIC EXPDTA X-RAY DIFFRACTION AUTHOR P.CIONI,A.PESCE,B.M.D.ROCCA,L.CASTELLIFALCONIPARRILLI,M.BOLOGNESI, AUTHOR 2 G.STRAMBINI,A.DESIDERI REVDAT 4 09-OCT-19 1OAL 1 REMARK REVDAT 3 13-MAR-19 1OAL 1 REMARK ATOM REVDAT 2 24-FEB-09 1OAL 1 VERSN REVDAT 1 27-FEB-03 1OAL 0 JRNL AUTH P.CIONI,A.PESCE,B.MOROZZO DELLA ROCCA,S.CASTELLI,M.FALCONI, JRNL AUTH 2 L.PARRILLI,M.BOLOGNESI,G.STRAMBINI,A.DESIDERI JRNL TITL ACTIVE-SITE COPPER AND ZINC IONS MODULATE THE QUATERNARY JRNL TITL 2 STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE JRNL REF J.MOL.BIOL. V. 326 1351 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12595249 JRNL DOI 10.1016/S0022-2836(03)00047-0 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 22503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2275 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1110 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.700 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1290011965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22503 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8,000 25%, NACL 100 MM, SODIUM REMARK 280 ACETATE 50 MM, PH 4, T=28C, PH 4.00, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 43.05000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 24.85493 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.60000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 43.05000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 24.85493 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.60000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 43.05000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 24.85493 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.60000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 43.05000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 24.85493 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.60000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 43.05000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 24.85493 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.60000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 43.05000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 24.85493 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.60000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 49.70986 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 65.20000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 49.70986 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 65.20000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 49.70986 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 65.20000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 49.70986 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 65.20000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 49.70986 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 65.20000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 49.70986 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 65.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 99.41972 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 32.60000 REMARK 400 REMARK 400 COMPOUND REMARK 400 MUTATED RESIDUES: MET 63 GLU REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLN A 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 6 CD CE NZ REMARK 480 LYS A 14 CE NZ REMARK 480 GLU A 20 CD OE1 OE2 REMARK 480 ILE A 31 CD1 REMARK 480 LYS A 57 CD CE NZ REMARK 480 LYS A 60 CD CE NZ REMARK 480 LYS A 78 NZ REMARK 480 LYS A 115 CD CE NZ REMARK 480 LYS A 118 CG CD CE NZ REMARK 480 LYS A 136 CE NZ REMARK 480 GLN A 151 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2072 O HOH A 2073 0.66 REMARK 500 OG SER A 98 ND2 ASN A 100 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2084 O HOH A 2084 4555 0.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 20 CG GLU A 20 CD 0.094 REMARK 500 GLN A 151 CB GLN A 151 CG 0.276 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLN A 151 CA - CB - CG ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 72 63.05 -150.79 REMARK 500 ASP A 86 45.18 -90.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 152 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 ND1 REMARK 620 2 ASP A 91 OD1 117.2 REMARK 620 3 HIS A 70 ND1 104.7 109.6 REMARK 620 4 HIS A 79 ND1 123.8 96.2 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 153 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 45 ND1 REMARK 620 2 HIS A 125 NE2 99.9 REMARK 620 3 HIS A 47 NE2 141.1 119.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 153 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BZO RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU, ZN SUPEROXIDE REMARK 900 DISMUTASE FROM P.LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY. REMARK 900 RELATED ID: 1IB5 RELATED DB: PDB REMARK 900 X-RAY 3D STRUCTURE OF P.LEIOGNATHI CU,ZN SOD MUTANT W83Y REMARK 900 RELATED ID: 1IBB RELATED DB: PDB REMARK 900 X-RAY 3D STRUCTURE OF P.LEIOGNATHI CU,ZN SOD MUTANT W83F REMARK 900 RELATED ID: 1IBD RELATED DB: PDB REMARK 900 X-RAY 3D STRUCTURE OF P.LEIOGNATHI CU,ZN SOD MUTANT V29A REMARK 900 RELATED ID: 1IBF RELATED DB: PDB REMARK 900 X-RAY 3D STRUCTURE OF P.LEIOGNATHI CU,ZN SOD MUTANT V29G REMARK 900 RELATED ID: 1IBH RELATED DB: PDB REMARK 900 X-RAY 3D STRUCTURE OF P.LEIOGNATHI CU,ZN SOD MUTANT M41I REMARK 900 RELATED ID: 1OAJ RELATED DB: PDB REMARK 900 ACTIVE SITE COPPER AND ZINC IONS MODULATE THE QUATERNARY STRUCTURE REMARK 900 OF PROKARYOTIC CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1YAI RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A BACTERIAL COPPER,ZINC SUPEROXIDE DISMUTASE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN USED IS A TRUNCATED FORM, WITHOUT THE FIRST 22 REMARK 999 RESIDUES DBREF 1OAL A 1 151 UNP P00446 SODC_PHOLE 23 173 SEQADV 1OAL ILE A 31 UNP P00446 THR 53 CONFLICT SEQADV 1OAL GLU A 41 UNP P00446 MET 63 ENGINEERED MUTATION SEQRES 1 A 151 GLN ASP LEU THR VAL LYS MET THR ASP LEU GLN THR GLY SEQRES 2 A 151 LYS PRO VAL GLY THR ILE GLU LEU SER GLN ASN LYS TYR SEQRES 3 A 151 GLY VAL VAL PHE ILE PRO GLU LEU ALA ASP LEU THR PRO SEQRES 4 A 151 GLY GLU HIS GLY PHE HIS ILE HIS GLN ASN GLY SER CYS SEQRES 5 A 151 ALA SER SER GLU LYS ASP GLY LYS VAL VAL LEU GLY GLY SEQRES 6 A 151 ALA ALA GLY GLY HIS TYR ASP PRO GLU HIS THR ASN LYS SEQRES 7 A 151 HIS GLY PHE PRO TRP THR ASP ASP ASN HIS LYS GLY ASP SEQRES 8 A 151 LEU PRO ALA LEU PHE VAL SER ALA ASN GLY LEU ALA THR SEQRES 9 A 151 ASN PRO VAL LEU ALA PRO ARG LEU THR LEU LYS GLU LEU SEQRES 10 A 151 LYS GLY HIS ALA ILE MET ILE HIS ALA GLY GLY ASP ASN SEQRES 11 A 151 HIS SER ASP MET PRO LYS ALA LEU GLY GLY GLY GLY ALA SEQRES 12 A 151 ARG VAL ALA CYS GLY VAL ILE GLN HET ZN A 152 1 HET CU A 153 1 HETNAM ZN ZINC ION HETNAM CU COPPER (II) ION FORMUL 2 ZN ZN 2+ FORMUL 3 CU CU 2+ FORMUL 4 HOH *100(H2 O) HELIX 1 1 GLY A 64 GLY A 68 5 5 HELIX 2 2 THR A 113 LYS A 118 1 6 HELIX 3 3 LYS A 136 GLY A 141 5 6 SHEET 1 A 7 PHE A 44 HIS A 47 0 SHEET 2 A 7 ALA A 121 HIS A 125 -1 O ALA A 121 N HIS A 47 SHEET 3 A 7 ARG A 144 VAL A 149 -1 O GLY A 148 N ILE A 122 SHEET 4 A 7 ASP A 2 ASP A 9 -1 N THR A 8 O CYS A 147 SHEET 5 A 7 PRO A 15 ASN A 24 -1 O LEU A 21 N LEU A 3 SHEET 6 A 7 GLY A 27 LEU A 34 -1 O ILE A 31 N GLU A 20 SHEET 7 A 7 VAL A 107 ALA A 109 -1 O VAL A 107 N PHE A 30 SHEET 1 B 2 GLY A 40 HIS A 42 0 SHEET 2 B 2 LEU A 95 VAL A 97 -1 O LEU A 95 N HIS A 42 SHEET 1 C 2 SER A 55 LYS A 57 0 SHEET 2 C 2 LYS A 60 VAL A 62 -1 O VAL A 62 N SER A 55 SSBOND 1 CYS A 52 CYS A 147 1555 1555 2.04 LINK ZN ZN A 152 ND1 HIS A 88 1555 1555 1.99 LINK ZN ZN A 152 OD1 ASP A 91 1555 1555 1.98 LINK ZN ZN A 152 ND1 HIS A 70 1555 1555 2.04 LINK ZN ZN A 152 ND1 HIS A 79 1555 1555 2.05 LINK CU CU A 153 ND1 HIS A 45 1555 1555 1.97 LINK CU CU A 153 NE2 HIS A 125 1555 1555 1.99 LINK CU CU A 153 NE2 HIS A 47 1555 1555 1.94 CISPEP 1 MET A 134 PRO A 135 0 1.94 SITE 1 AC1 4 HIS A 70 HIS A 79 HIS A 88 ASP A 91 SITE 1 AC2 4 HIS A 45 HIS A 47 HIS A 70 HIS A 125 CRYST1 86.100 86.100 97.800 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011614 0.006705 0.000000 0.00000 SCALE2 0.000000 0.013411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010225 0.00000