PDB Short entry for 1OIF HEADER HYDROLASE 16-JUN-03 1OIF TITLE FAMILY 1 B-GLUCOSIDASE FROM THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC MODULE; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS HYDROLASE, GLUCOSIDE HYDROLYSIS, FAMILY GH1, ENZYME, ISOFAGOMINE EXPDTA X-RAY DIFFRACTION AUTHOR T.GLOSTER,D.ZECHEL,A.B.BORASTON,C.M.BORASTON,J.M.MACDONALD, AUTHOR 2 D.M.TILBROOK,R.V.STICK,G.J.DAVIES REVDAT 6 13-DEC-23 1OIF 1 REMARK HETSYN REVDAT 5 22-JUL-15 1OIF 1 REMARK VERSN HETSYN FORMUL REVDAT 5 2 1 SHEET REVDAT 4 24-FEB-09 1OIF 1 VERSN REVDAT 3 06-MAR-07 1OIF 1 REMARK REVDAT 2 20-FEB-07 1OIF 1 REMARK MASTER REVDAT 1 25-NOV-03 1OIF 0 JRNL AUTH D.L.ZECHEL,A.B.BORASTON,T.GLOSTER,C.M.BORASTON, JRNL AUTH 2 J.M.MACDONALD,D.M.TILBROOK,R.V.STICK,G.J.DAVIES JRNL TITL IMINOSUGAR GLYCOSIDASE INHIBITORS: STRUCTURAL AND JRNL TITL 2 THERMODYNAMIC DISSECTION OF THE BINDING OF ISOFAGOMINE AND JRNL TITL 3 1-DEOXYNOJIRIMYCIN TO BETA-GLUCOSIDASES JRNL REF J.AM.CHEM.SOC. V. 125 14313 2003 JRNL REFN ISSN 0002-7863 JRNL PMID 14624580 JRNL DOI 10.1021/JA036833H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.M.GLOSTER,P.MELONCELLI,R.V.STICK,D.ZECHEL,A.VASELLA, REMARK 1 AUTH 2 G.J.DAVIES REMARK 1 TITL GLYCOSIDASE INHIBITION: AN ASSESSMENT OF THE BINDING OF 18 REMARK 1 TITL 2 PUTATIVE TRANSITION-STATE MIMICS. REMARK 1 REF J.AM.CHEM.SOC. V. 129 2345 2007 REMARK 1 REFN ISSN 0002-7863 REMARK 1 PMID 17279749 REMARK 1 DOI 10.1021/JA066961G REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 55087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2935 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3227 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7141 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 1.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.666 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7411 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10079 ; 1.428 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 882 ; 6.383 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1022 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5855 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3669 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 430 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4385 ; 0.743 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7050 ; 1.408 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3026 ; 2.301 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3029 ; 3.552 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 446 3 REMARK 3 1 B 1 B 446 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1764 ; 0.07 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 1741 ; 0.35 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 1764 ; 0.41 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 1741 ; 2.73 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1290012165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 574792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.320 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.34 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.166 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1OD0 REMARK 200 REMARK 200 REMARK: STRUCTURE ISOMORPHOUS WITH STARTING ENTRY REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN IN 15% PEG 4K, 0.2 M REMARK 280 CAAC,0.1M IMIDAZOLE PH7, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.32350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.07800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.59700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.07800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.32350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.59700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 HYDROLYSIS OF TERMINAL, NON-REDUCING BETA-D- REMARK 400 GLUCOSE RESIDUES WITH RELEASE OF BETA-D-GLUCOSE. INVOLVED REMARK 400 IN CELLULOSE DEGRADATION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 LEU A -8 REMARK 465 VAL A -7 REMARK 465 PRO A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 ASN A 2 REMARK 465 MET B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 LEU B -8 REMARK 465 VAL B -7 REMARK 465 PRO B -6 REMARK 465 ARG B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 HIS B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 1 REMARK 465 LYS B 213 REMARK 465 PRO B 307 REMARK 465 ASP B 446 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 213 CB CG CD CE NZ REMARK 470 GLU A 231 CB CG CD OE1 OE2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 GLU A 233 CB CG CD OE1 OE2 REMARK 470 ILE A 236 CG1 CG2 CD1 REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS A 286 CD CE NZ REMARK 470 LYS A 301 CB CG CD CE NZ REMARK 470 ASP A 305 CB CG OD1 OD2 REMARK 470 ALA A 306 CB REMARK 470 LYS A 339 CD CE NZ REMARK 470 LYS A 393 CE NZ REMARK 470 LYS A 440 CD CE NZ REMARK 470 GLU A 445 CD OE1 OE2 REMARK 470 ASN B 2 CB CG OD1 ND2 REMARK 470 LYS B 4 CE NZ REMARK 470 LYS B 5 CD CE REMARK 470 GLU B 8 CB CG CD OE1 OE2 REMARK 470 LYS B 62 CD CE NZ REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 LYS B 70 CB CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 ARG B 92 CD NE CZ NH1 NH2 REMARK 470 LYS B 96 CD CE NZ REMARK 470 LYS B 206 CD CE NZ REMARK 470 ASP B 214 CB CG OD1 OD2 REMARK 470 LYS B 216 CD CE NZ REMARK 470 LYS B 232 CG CD CE NZ REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 GLU B 274 CB CG CD OE1 OE2 REMARK 470 LYS B 286 CG CD CE NZ REMARK 470 ALA B 306 CB REMARK 470 GLU B 362 CB CG CD OE1 OE2 REMARK 470 LYS B 376 CB CG CD CE NZ REMARK 470 LYS B 425 CD CE NZ REMARK 470 LYS B 440 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 288 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 106 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU B 444 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 54 -125.55 55.28 REMARK 500 TRP A 122 -11.36 92.92 REMARK 500 ASN A 275 52.84 -109.54 REMARK 500 GLU A 285 127.38 -33.28 REMARK 500 TYR A 295 -40.96 -136.25 REMARK 500 ALA A 308 -7.37 82.40 REMARK 500 TRP A 406 -128.16 53.98 REMARK 500 ASN B 47 15.14 59.77 REMARK 500 ALA B 54 -121.14 47.84 REMARK 500 TRP B 122 -11.73 95.74 REMARK 500 TYR B 295 -43.09 -138.37 REMARK 500 GLU B 405 57.95 -90.30 REMARK 500 TRP B 406 -126.62 51.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2011 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2015 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A2104 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B2017 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH B2022 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B2051 DISTANCE = 8.70 ANGSTROMS REMARK 525 HOH B2058 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B2065 DISTANCE = 6.16 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IFM A 1447 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IFM B 1446 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OD0 RELATED DB: PDB REMARK 900 FAMILY 1 B-GLUCOSIDASE FROM THERMOTOGA MARITIMA REMARK 900 RELATED ID: 1OIM RELATED DB: PDB REMARK 900 FAMILY 1 B-GLUCOSIDASE FROM THERMOTOGA MARITIMA REMARK 900 RELATED ID: 1OIN RELATED DB: PDB REMARK 900 FAMILY 1 B-GLUCOSIDASE FROM THERMOTOGA MARITIMA REMARK 999 REMARK 999 SEQUENCE REMARK 999 A1,2, B1,213,307,446 POOR OR MISSING DENSITY REMARK 999 THE FULL LENGTH PROTEIN ALSO CONTAINS A HIS-TAG FROM THE REMARK 999 PET28A CLONING VECTOR. NUMBERING OF THE PROTEIN REMARK 999 AGREES WITH THE SWISSPROT ENTRY AND IGNORES REMARK 999 THE HIS-TAG DBREF 1OIF A -21 1 PDB 1OIF 1OIF -21 1 DBREF 1OIF A 2 446 UNP Q08638 BGLA_THEMA 2 446 DBREF 1OIF B -21 1 PDB 1OIF 1OIF -21 1 DBREF 1OIF B 2 446 UNP Q08638 BGLA_THEMA 2 446 SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 468 LEU VAL PRO ARG GLY SER HIS MET ALA SER ASN VAL LYS SEQRES 3 A 468 LYS PHE PRO GLU GLY PHE LEU TRP GLY VAL ALA THR ALA SEQRES 4 A 468 SER TYR GLN ILE GLU GLY SER PRO LEU ALA ASP GLY ALA SEQRES 5 A 468 GLY MET SER ILE TRP HIS THR PHE SER HIS THR PRO GLY SEQRES 6 A 468 ASN VAL LYS ASN GLY ASP THR GLY ASP VAL ALA CYS ASP SEQRES 7 A 468 HIS TYR ASN ARG TRP LYS GLU ASP ILE GLU ILE ILE GLU SEQRES 8 A 468 LYS LEU GLY VAL LYS ALA TYR ARG PHE SER ILE SER TRP SEQRES 9 A 468 PRO ARG ILE LEU PRO GLU GLY THR GLY ARG VAL ASN GLN SEQRES 10 A 468 LYS GLY LEU ASP PHE TYR ASN ARG ILE ILE ASP THR LEU SEQRES 11 A 468 LEU GLU LYS GLY ILE THR PRO PHE VAL THR ILE TYR HIS SEQRES 12 A 468 TRP ASP LEU PRO PHE ALA LEU GLN LEU LYS GLY GLY TRP SEQRES 13 A 468 ALA ASN ARG GLU ILE ALA ASP TRP PHE ALA GLU TYR SER SEQRES 14 A 468 ARG VAL LEU PHE GLU ASN PHE GLY ASP ARG VAL LYS ASN SEQRES 15 A 468 TRP ILE THR LEU ASN GLU PRO TRP VAL VAL ALA ILE VAL SEQRES 16 A 468 GLY HIS LEU TYR GLY VAL HIS ALA PRO GLY MET ARG ASP SEQRES 17 A 468 ILE TYR VAL ALA PHE ARG ALA VAL HIS ASN LEU LEU ARG SEQRES 18 A 468 ALA HIS ALA ARG ALA VAL LYS VAL PHE ARG GLU THR VAL SEQRES 19 A 468 LYS ASP GLY LYS ILE GLY ILE VAL PHE ASN ASN GLY TYR SEQRES 20 A 468 PHE GLU PRO ALA SER GLU LYS GLU GLU ASP ILE ARG ALA SEQRES 21 A 468 VAL ARG PHE MET HIS GLN PHE ASN ASN TYR PRO LEU PHE SEQRES 22 A 468 LEU ASN PRO ILE TYR ARG GLY ASP TYR PRO GLU LEU VAL SEQRES 23 A 468 LEU GLU PHE ALA ARG GLU TYR LEU PRO GLU ASN TYR LYS SEQRES 24 A 468 ASP ASP MET SER GLU ILE GLN GLU LYS ILE ASP PHE VAL SEQRES 25 A 468 GLY LEU ASN TYR TYR SER GLY HIS LEU VAL LYS PHE ASP SEQRES 26 A 468 PRO ASP ALA PRO ALA LYS VAL SER PHE VAL GLU ARG ASP SEQRES 27 A 468 LEU PRO LYS THR ALA MET GLY TRP GLU ILE VAL PRO GLU SEQRES 28 A 468 GLY ILE TYR TRP ILE LEU LYS LYS VAL LYS GLU GLU TYR SEQRES 29 A 468 ASN PRO PRO GLU VAL TYR ILE THR GLU ASN GLY ALA ALA SEQRES 30 A 468 PHE ASP ASP VAL VAL SER GLU ASP GLY ARG VAL HIS ASP SEQRES 31 A 468 GLN ASN ARG ILE ASP TYR LEU LYS ALA HIS ILE GLY GLN SEQRES 32 A 468 ALA TRP LYS ALA ILE GLN GLU GLY VAL PRO LEU LYS GLY SEQRES 33 A 468 TYR PHE VAL TRP SER LEU LEU ASP ASN PHE GLU TRP ALA SEQRES 34 A 468 GLU GLY TYR SER LYS ARG PHE GLY ILE VAL TYR VAL ASP SEQRES 35 A 468 TYR SER THR GLN LYS ARG ILE VAL LYS ASP SER GLY TYR SEQRES 36 A 468 TRP TYR SER ASN VAL VAL LYS ASN ASN GLY LEU GLU ASP SEQRES 1 B 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 468 LEU VAL PRO ARG GLY SER HIS MET ALA SER ASN VAL LYS SEQRES 3 B 468 LYS PHE PRO GLU GLY PHE LEU TRP GLY VAL ALA THR ALA SEQRES 4 B 468 SER TYR GLN ILE GLU GLY SER PRO LEU ALA ASP GLY ALA SEQRES 5 B 468 GLY MET SER ILE TRP HIS THR PHE SER HIS THR PRO GLY SEQRES 6 B 468 ASN VAL LYS ASN GLY ASP THR GLY ASP VAL ALA CYS ASP SEQRES 7 B 468 HIS TYR ASN ARG TRP LYS GLU ASP ILE GLU ILE ILE GLU SEQRES 8 B 468 LYS LEU GLY VAL LYS ALA TYR ARG PHE SER ILE SER TRP SEQRES 9 B 468 PRO ARG ILE LEU PRO GLU GLY THR GLY ARG VAL ASN GLN SEQRES 10 B 468 LYS GLY LEU ASP PHE TYR ASN ARG ILE ILE ASP THR LEU SEQRES 11 B 468 LEU GLU LYS GLY ILE THR PRO PHE VAL THR ILE TYR HIS SEQRES 12 B 468 TRP ASP LEU PRO PHE ALA LEU GLN LEU LYS GLY GLY TRP SEQRES 13 B 468 ALA ASN ARG GLU ILE ALA ASP TRP PHE ALA GLU TYR SER SEQRES 14 B 468 ARG VAL LEU PHE GLU ASN PHE GLY ASP ARG VAL LYS ASN SEQRES 15 B 468 TRP ILE THR LEU ASN GLU PRO TRP VAL VAL ALA ILE VAL SEQRES 16 B 468 GLY HIS LEU TYR GLY VAL HIS ALA PRO GLY MET ARG ASP SEQRES 17 B 468 ILE TYR VAL ALA PHE ARG ALA VAL HIS ASN LEU LEU ARG SEQRES 18 B 468 ALA HIS ALA ARG ALA VAL LYS VAL PHE ARG GLU THR VAL SEQRES 19 B 468 LYS ASP GLY LYS ILE GLY ILE VAL PHE ASN ASN GLY TYR SEQRES 20 B 468 PHE GLU PRO ALA SER GLU LYS GLU GLU ASP ILE ARG ALA SEQRES 21 B 468 VAL ARG PHE MET HIS GLN PHE ASN ASN TYR PRO LEU PHE SEQRES 22 B 468 LEU ASN PRO ILE TYR ARG GLY ASP TYR PRO GLU LEU VAL SEQRES 23 B 468 LEU GLU PHE ALA ARG GLU TYR LEU PRO GLU ASN TYR LYS SEQRES 24 B 468 ASP ASP MET SER GLU ILE GLN GLU LYS ILE ASP PHE VAL SEQRES 25 B 468 GLY LEU ASN TYR TYR SER GLY HIS LEU VAL LYS PHE ASP SEQRES 26 B 468 PRO ASP ALA PRO ALA LYS VAL SER PHE VAL GLU ARG ASP SEQRES 27 B 468 LEU PRO LYS THR ALA MET GLY TRP GLU ILE VAL PRO GLU SEQRES 28 B 468 GLY ILE TYR TRP ILE LEU LYS LYS VAL LYS GLU GLU TYR SEQRES 29 B 468 ASN PRO PRO GLU VAL TYR ILE THR GLU ASN GLY ALA ALA SEQRES 30 B 468 PHE ASP ASP VAL VAL SER GLU ASP GLY ARG VAL HIS ASP SEQRES 31 B 468 GLN ASN ARG ILE ASP TYR LEU LYS ALA HIS ILE GLY GLN SEQRES 32 B 468 ALA TRP LYS ALA ILE GLN GLU GLY VAL PRO LEU LYS GLY SEQRES 33 B 468 TYR PHE VAL TRP SER LEU LEU ASP ASN PHE GLU TRP ALA SEQRES 34 B 468 GLU GLY TYR SER LYS ARG PHE GLY ILE VAL TYR VAL ASP SEQRES 35 B 468 TYR SER THR GLN LYS ARG ILE VAL LYS ASP SER GLY TYR SEQRES 36 B 468 TRP TYR SER ASN VAL VAL LYS ASN ASN GLY LEU GLU ASP HET IFM A1447 10 HET IFM B1446 10 HETNAM IFM 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE HETSYN IFM AFEGOSTAT; ISOFAGOMINE; (3R,4R,5R)-5-(HYDROXYMETHYL) HETSYN 2 IFM PIPERIDINE-3,4-DIOL FORMUL 3 IFM 2(C6 H13 N O3) FORMUL 5 HOH *468(H2 O) HELIX 1 1 ALA A 17 GLU A 22 1 6 HELIX 2 2 LEU A 26 ALA A 30 5 5 HELIX 3 3 SER A 33 HIS A 40 1 8 HELIX 4 4 VAL A 45 ASP A 49 5 5 HELIX 5 5 ASP A 56 GLY A 72 1 17 HELIX 6 6 SER A 81 LEU A 86 1 6 HELIX 7 7 ASN A 94 LYS A 111 1 18 HELIX 8 8 PRO A 125 LEU A 130 1 6 HELIX 9 9 LYS A 131 ARG A 137 5 7 HELIX 10 10 GLU A 138 GLY A 155 1 18 HELIX 11 11 GLU A 166 LEU A 176 1 11 HELIX 12 12 ASP A 186 VAL A 212 1 27 HELIX 13 13 LYS A 232 ASN A 247 1 16 HELIX 14 14 TYR A 248 GLY A 258 1 11 HELIX 15 15 PRO A 261 ARG A 269 1 9 HELIX 16 16 ASN A 275 ASP A 278 5 4 HELIX 17 17 ASP A 279 GLN A 284 1 6 HELIX 18 18 ALA A 306 ALA A 308 5 3 HELIX 19 19 PRO A 328 ASN A 343 1 16 HELIX 20 20 ASP A 368 GLU A 388 1 21 HELIX 21 21 GLU A 405 LYS A 412 5 8 HELIX 22 22 LYS A 429 ASN A 442 1 14 HELIX 23 23 ALA B 17 GLU B 22 1 6 HELIX 24 24 LEU B 26 ALA B 30 5 5 HELIX 25 25 SER B 33 HIS B 40 1 8 HELIX 26 26 VAL B 45 ASP B 49 5 5 HELIX 27 27 ASP B 56 GLY B 72 1 17 HELIX 28 28 SER B 81 LEU B 86 1 6 HELIX 29 29 ASN B 94 LYS B 111 1 18 HELIX 30 30 PRO B 125 LEU B 130 1 6 HELIX 31 31 LYS B 131 ARG B 137 5 7 HELIX 32 32 GLU B 138 GLY B 155 1 18 HELIX 33 33 GLU B 166 LEU B 176 1 11 HELIX 34 34 ASP B 186 VAL B 212 1 27 HELIX 35 35 LYS B 232 ASN B 247 1 16 HELIX 36 36 TYR B 248 GLY B 258 1 11 HELIX 37 37 PRO B 261 ARG B 269 1 9 HELIX 38 38 GLU B 270 LEU B 272 5 3 HELIX 39 39 ASN B 275 ASP B 278 5 4 HELIX 40 40 ASP B 279 GLN B 284 1 6 HELIX 41 41 PRO B 328 ASN B 343 1 16 HELIX 42 42 ASP B 368 GLU B 388 1 21 HELIX 43 43 GLU B 405 LYS B 412 5 8 HELIX 44 44 LYS B 429 ASN B 441 1 13 SHEET 1 AA 2 LYS A 4 LYS A 5 0 SHEET 2 AA 2 GLY A 443 LEU A 444 -1 O LEU A 444 N LYS A 4 SHEET 1 AB10 LEU A 11 ALA A 15 0 SHEET 2 AB10 LEU A 392 TRP A 398 1 O LYS A 393 N LEU A 11 SHEET 3 AB10 VAL A 347 ASN A 352 1 O VAL A 347 N LYS A 393 SHEET 4 AB10 PHE A 289 PHE A 302 1 O VAL A 290 N TYR A 348 SHEET 5 AB10 LYS A 216 PRO A 228 1 O ILE A 219 N GLY A 291 SHEET 6 AB10 ASN A 160 ASN A 165 1 O TRP A 161 N GLY A 218 SHEET 7 AB10 THR A 114 TYR A 120 1 O PRO A 115 N ASN A 160 SHEET 8 AB10 ALA A 75 SER A 79 1 O TYR A 76 N PHE A 116 SHEET 9 AB10 LEU A 11 ALA A 15 1 O VAL A 14 N ARG A 77 SHEET 10 AB10 LEU A 11 ALA A 15 0 SHEET 1 AC 2 VAL A 417 VAL A 419 0 SHEET 2 AC 2 ARG A 426 VAL A 428 -1 O ILE A 427 N TYR A 418 SHEET 1 BA 2 LYS B 4 LYS B 5 0 SHEET 2 BA 2 GLY B 443 LEU B 444 -1 O LEU B 444 N LYS B 4 SHEET 1 BB10 LEU B 11 ALA B 15 0 SHEET 2 BB10 LEU B 392 TRP B 398 1 O LYS B 393 N LEU B 11 SHEET 3 BB10 VAL B 347 ASN B 352 1 O VAL B 347 N LYS B 393 SHEET 4 BB10 PHE B 289 PHE B 302 1 O VAL B 290 N TYR B 348 SHEET 5 BB10 LYS B 216 PRO B 228 1 O ILE B 219 N GLY B 291 SHEET 6 BB10 ASN B 160 ASN B 165 1 O TRP B 161 N GLY B 218 SHEET 7 BB10 THR B 114 TYR B 120 1 O VAL B 117 N ILE B 162 SHEET 8 BB10 ALA B 75 SER B 79 1 O TYR B 76 N PHE B 116 SHEET 9 BB10 LEU B 11 ALA B 15 1 O TRP B 12 N ALA B 75 SHEET 10 BB10 LEU B 11 ALA B 15 0 SHEET 1 BC 2 VAL B 417 ASP B 420 0 SHEET 2 BC 2 LYS B 425 VAL B 428 -1 O LYS B 425 N ASP B 420 CISPEP 1 ALA A 181 PRO A 182 0 2.36 CISPEP 2 TRP A 398 SER A 399 0 4.44 CISPEP 3 ALA B 181 PRO B 182 0 0.94 CISPEP 4 TRP B 398 SER B 399 0 0.75 SITE 1 AC1 10 GLN A 20 HIS A 121 GLU A 166 TYR A 295 SITE 2 AC1 10 TRP A 324 GLU A 351 TRP A 398 GLU A 405 SITE 3 AC1 10 TRP A 406 PHE A 414 SITE 1 AC2 9 GLN B 20 HIS B 121 GLU B 166 TYR B 295 SITE 2 AC2 9 TRP B 324 GLU B 351 TRP B 398 GLU B 405 SITE 3 AC2 9 TRP B 406 CRYST1 94.647 95.194 114.156 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008760 0.00000