PDB Short entry for 1OIK HEADER OXIDOREDUCTASE 18-JUN-03 1OIK TITLE CRYSTAL STRUCTURE OF THE ALKYLSULFATASE ATSK, A NON-HEME FE(II) TITLE 2 ALPHAKETOGLUTARATE DEPENDENT DIOXYGENASE IN COMPLEX WITH FE, TITLE 3 ALPHAKETOGLUTARATE AND 2-ETHYL-1-HEXANESULFURIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ALKYLSULFATASE ATSK; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: NON-HEME FE(II) ALPHA KETOGLUTARATE DEPENDENT DIOXYGENASE, COMPND 5 ALKYLSULFATASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: S-313; SOURCE 5 OTHER_DETAILS: DSM 6884 KEYWDS OXIDOREDUCTASE, JELLY ROLL EXPDTA X-RAY DIFFRACTION AUTHOR I.MUELLER,A.KAHNERT,T.PAPE,T.DIERKS,W.MEYER-KLAUKE,M.A.KERTESZ,I.USON REVDAT 5 13-DEC-23 1OIK 1 REMARK LINK REVDAT 4 24-JUL-19 1OIK 1 REMARK REVDAT 3 22-DEC-09 1OIK 1 VERSN REVDAT 2 24-FEB-09 1OIK 1 VERSN REVDAT 1 30-MAR-04 1OIK 0 JRNL AUTH I.MUELLER,A.KAHNERT,T.PAPE,G.M.SHELDRICK,W.MEYER-KLAUCKE, JRNL AUTH 2 T.DIERKS,M.A.KERTESZ,I.USON JRNL TITL CRYSTAL STRUCTURE OF THE ALKYLSULFATASE ATSK: INSIGHTS INTO JRNL TITL 2 THE CATALYTIC MECHANISM OF THE FE(II) JRNL TITL 3 ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE SUPERFAMILY JRNL REF BIOCHEMISTRY V. 42 3075 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15023059 JRNL DOI 10.1021/BI035752V REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2581 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3355 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.72000 REMARK 3 B22 (A**2) : 3.76000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.970 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3954 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5389 ; 1.661 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 6.524 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 607 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3052 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1647 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 245 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.032 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.301 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2452 ; 1.772 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3926 ; 3.162 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1502 ; 3.927 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1463 ; 5.846 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 13 A 80 1 REMARK 3 1 D 13 D 80 1 REMARK 3 2 A 103 A 165 2 REMARK 3 2 D 103 D 165 2 REMARK 3 3 A 191 A 299 3 REMARK 3 3 D 191 D 299 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1841 ; 0.07 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1841 ; 0.34 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1290012921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8111 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : PREMIRROR, TRIANGULAR REMARK 200 MONOCHROMATOR, BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 13.530 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.240 REMARK 200 R MERGE (I) : 0.05710 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.86 REMARK 200 R MERGE FOR SHELL (I) : 0.32090 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1OIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.01350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.85900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.94600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.85900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.01350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.94600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.01350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.94600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.85900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.94600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.01350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.85900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 141.89200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.85900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 PRO A 10 REMARK 465 HIS A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 82 REMARK 465 THR A 83 REMARK 465 VAL A 84 REMARK 465 PRO A 85 REMARK 465 VAL A 86 REMARK 465 VAL A 87 REMARK 465 ASP A 88 REMARK 465 GLY A 89 REMARK 465 THR A 90 REMARK 465 ARG A 91 REMARK 465 TYR A 92 REMARK 465 LEU A 93 REMARK 465 LEU A 94 REMARK 465 GLN A 95 REMARK 465 LEU A 96 REMARK 465 ASP A 97 REMARK 465 GLY A 98 REMARK 465 ALA A 99 REMARK 465 GLN A 100 REMARK 465 GLY A 101 REMARK 465 GLN A 102 REMARK 465 TYR A 166 REMARK 465 ASP A 167 REMARK 465 TYR A 168 REMARK 465 ALA A 169 REMARK 465 SER A 170 REMARK 465 LEU A 171 REMARK 465 LYS A 172 REMARK 465 PRO A 173 REMARK 465 ASP A 174 REMARK 465 ILE A 175 REMARK 465 ASP A 176 REMARK 465 PRO A 177 REMARK 465 ALA A 178 REMARK 465 LYS A 179 REMARK 465 LEU A 180 REMARK 465 GLU A 181 REMARK 465 ARG A 182 REMARK 465 HIS A 183 REMARK 465 ARG A 184 REMARK 465 LYS A 185 REMARK 465 VAL A 186 REMARK 465 PHE A 187 REMARK 465 THR A 188 REMARK 465 SER A 189 REMARK 465 THR A 190 REMARK 465 VAL A 191 REMARK 465 LYS A 300 REMARK 465 GLY A 301 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ASN D 3 REMARK 465 ALA D 4 REMARK 465 ALA D 5 REMARK 465 LEU D 6 REMARK 465 ALA D 7 REMARK 465 THR D 8 REMARK 465 ALA D 9 REMARK 465 PRO D 10 REMARK 465 HIS D 11 REMARK 465 ALA D 12 REMARK 465 LEU D 13 REMARK 465 PRO D 82 REMARK 465 THR D 83 REMARK 465 VAL D 84 REMARK 465 GLY D 98 REMARK 465 ALA D 99 REMARK 465 GLN D 100 REMARK 465 GLY D 101 REMARK 465 GLN D 102 REMARK 465 TYR D 166 REMARK 465 ASP D 167 REMARK 465 TYR D 168 REMARK 465 ALA D 169 REMARK 465 SER D 170 REMARK 465 LEU D 171 REMARK 465 LYS D 172 REMARK 465 PRO D 173 REMARK 465 ASP D 174 REMARK 465 ILE D 175 REMARK 465 ASP D 176 REMARK 465 PRO D 177 REMARK 465 ALA D 178 REMARK 465 LYS D 179 REMARK 465 LEU D 180 REMARK 465 GLU D 181 REMARK 465 ARG D 182 REMARK 465 HIS D 183 REMARK 465 ARG D 184 REMARK 465 LYS D 185 REMARK 465 VAL D 186 REMARK 465 PHE D 187 REMARK 465 THR D 188 REMARK 465 SER D 189 REMARK 465 THR D 190 REMARK 465 GLY D 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 VAL A 79 CG1 CG2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 14 CG CD OE1 OE2 REMARK 470 GLU D 77 CG CD OE1 OE2 REMARK 470 ARG D 91 NE CZ NH1 NH2 REMARK 470 LEU D 96 CG CD1 CD2 REMARK 470 ASP D 97 CG OD1 OD2 REMARK 470 ARG D 165 CG CD NE CZ NH1 NH2 REMARK 470 VAL D 191 CG1 CG2 REMARK 470 LYS D 217 CG CD CE NZ REMARK 470 LYS D 220 CG CD CE NZ REMARK 470 LEU D 224 CG CD1 CD2 REMARK 470 ARG D 299 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 300 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA D 255 CA ALA D 255 CB 0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 38 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 110 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 269 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP D 38 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP D 269 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 -38.98 78.97 REMARK 500 GLN A 60 43.87 -90.25 REMARK 500 ALA A 80 155.65 -47.11 REMARK 500 ALA A 104 53.83 -92.69 REMARK 500 ALA A 116 74.08 -111.47 REMARK 500 LEU A 212 -135.57 -139.64 REMARK 500 ALA A 261 25.40 -141.37 REMARK 500 ASP A 268 68.34 -108.44 REMARK 500 LYS D 53 -36.89 75.37 REMARK 500 GLN D 60 45.37 -90.37 REMARK 500 ALA D 104 49.87 -98.04 REMARK 500 ALA D 116 76.61 -111.69 REMARK 500 ASP D 156 -18.84 -49.54 REMARK 500 LEU D 212 -134.93 -138.68 REMARK 500 ALA D 261 24.83 -141.94 REMARK 500 ASP D 268 67.03 -103.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 108 NE2 REMARK 620 2 ASP A 110 OD2 98.4 REMARK 620 3 HIS A 264 NE2 90.7 90.7 REMARK 620 4 AKG A1301 O2 171.2 87.6 95.7 REMARK 620 5 AKG A1301 O5 90.2 169.2 95.7 83.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 D1302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 108 NE2 REMARK 620 2 ASP D 110 OD2 99.9 REMARK 620 3 HIS D 264 NE2 95.2 100.3 REMARK 620 4 AKG D1300 O2 173.5 86.4 85.5 REMARK 620 5 AKG D1300 O5 89.1 164.6 91.3 84.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 D 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C26 A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG D 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C26 D 1301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OIH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ALKYLSULFATASE ATSK, A NON-HEME FE(II) REMARK 900 ALPHAKETOGLUTARATE DEPENDENT DIOXYGENASE REMARK 900 RELATED ID: 1OII RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ALKYLSULFATASE ATSK, A NON-HEME FE(II) REMARK 900 ALPHAKETOGLUTARATE DEPENDENT DIOXYGENASE IN COMPLEX WITH IRON AND REMARK 900 ALPHAKETOGLUTARATE REMARK 900 RELATED ID: 1OIJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ALKYLSULFATASE ATSK, A NON-HEME FE(II) REMARK 900 ALPHAKETOGLUTARATE DEPENDENT DIOXYGENASE IN COMPLEX WITH REMARK 900 ALPHAKETOGLUTARATE DBREF 1OIK A 1 301 UNP Q9WWU5 Q9WWU5_PSEPU 1 301 DBREF 1OIK D 1 301 UNP Q9WWU5 Q9WWU5_PSEPU 1 301 SEQADV 1OIK ARG A 165 UNP Q9WWU5 GLU 165 CONFLICT SEQADV 1OIK ARG D 165 UNP Q9WWU5 GLU 165 CONFLICT SEQRES 1 A 301 MET SER ASN ALA ALA LEU ALA THR ALA PRO HIS ALA LEU SEQRES 2 A 301 GLU LEU ASP VAL HIS PRO VAL ALA GLY ARG ILE GLY ALA SEQRES 3 A 301 GLU ILE ARG GLY VAL LYS LEU SER PRO ASP LEU ASP ALA SEQRES 4 A 301 ALA THR VAL GLU ALA ILE GLN ALA ALA LEU VAL ARG HIS SEQRES 5 A 301 LYS VAL ILE PHE PHE ARG GLY GLN THR HIS LEU ASP ASP SEQRES 6 A 301 GLN SER GLN GLU GLY PHE ALA LYS LEU LEU GLY GLU PRO SEQRES 7 A 301 VAL ALA HIS PRO THR VAL PRO VAL VAL ASP GLY THR ARG SEQRES 8 A 301 TYR LEU LEU GLN LEU ASP GLY ALA GLN GLY GLN ARG ALA SEQRES 9 A 301 ASN SER TRP HIS THR ASP VAL THR PHE VAL GLU ALA TYR SEQRES 10 A 301 PRO LYS ALA SER ILE LEU ARG SER VAL VAL ALA PRO ALA SEQRES 11 A 301 SER GLY GLY ASP THR VAL TRP ALA ASN THR ALA ALA ALA SEQRES 12 A 301 TYR GLN GLU LEU PRO GLU PRO LEU ARG GLU LEU ALA ASP SEQRES 13 A 301 LYS LEU TRP ALA VAL HIS SER ASN ARG TYR ASP TYR ALA SEQRES 14 A 301 SER LEU LYS PRO ASP ILE ASP PRO ALA LYS LEU GLU ARG SEQRES 15 A 301 HIS ARG LYS VAL PHE THR SER THR VAL TYR GLU THR GLU SEQRES 16 A 301 HIS PRO VAL VAL ARG VAL HIS PRO ILE SER GLY GLU ARG SEQRES 17 A 301 ALA LEU GLN LEU GLY HIS PHE VAL LYS ARG ILE LYS GLY SEQRES 18 A 301 TYR SER LEU ALA ASP SER GLN HIS LEU PHE ALA VAL LEU SEQRES 19 A 301 GLN GLY HIS VAL THR ARG LEU GLU ASN THR VAL ARG TRP SEQRES 20 A 301 ARG TRP GLU ALA GLY ASP VAL ALA ILE TRP ASP ASN ARG SEQRES 21 A 301 ALA THR GLN HIS TYR ALA VAL ASP ASP TYR GLY THR GLN SEQRES 22 A 301 PRO ARG ILE VAL ARG ARG VAL THR LEU ALA GLY GLU VAL SEQRES 23 A 301 PRO VAL GLY VAL ASP GLY GLN LEU SER ARG THR THR ARG SEQRES 24 A 301 LYS GLY SEQRES 1 D 301 MET SER ASN ALA ALA LEU ALA THR ALA PRO HIS ALA LEU SEQRES 2 D 301 GLU LEU ASP VAL HIS PRO VAL ALA GLY ARG ILE GLY ALA SEQRES 3 D 301 GLU ILE ARG GLY VAL LYS LEU SER PRO ASP LEU ASP ALA SEQRES 4 D 301 ALA THR VAL GLU ALA ILE GLN ALA ALA LEU VAL ARG HIS SEQRES 5 D 301 LYS VAL ILE PHE PHE ARG GLY GLN THR HIS LEU ASP ASP SEQRES 6 D 301 GLN SER GLN GLU GLY PHE ALA LYS LEU LEU GLY GLU PRO SEQRES 7 D 301 VAL ALA HIS PRO THR VAL PRO VAL VAL ASP GLY THR ARG SEQRES 8 D 301 TYR LEU LEU GLN LEU ASP GLY ALA GLN GLY GLN ARG ALA SEQRES 9 D 301 ASN SER TRP HIS THR ASP VAL THR PHE VAL GLU ALA TYR SEQRES 10 D 301 PRO LYS ALA SER ILE LEU ARG SER VAL VAL ALA PRO ALA SEQRES 11 D 301 SER GLY GLY ASP THR VAL TRP ALA ASN THR ALA ALA ALA SEQRES 12 D 301 TYR GLN GLU LEU PRO GLU PRO LEU ARG GLU LEU ALA ASP SEQRES 13 D 301 LYS LEU TRP ALA VAL HIS SER ASN ARG TYR ASP TYR ALA SEQRES 14 D 301 SER LEU LYS PRO ASP ILE ASP PRO ALA LYS LEU GLU ARG SEQRES 15 D 301 HIS ARG LYS VAL PHE THR SER THR VAL TYR GLU THR GLU SEQRES 16 D 301 HIS PRO VAL VAL ARG VAL HIS PRO ILE SER GLY GLU ARG SEQRES 17 D 301 ALA LEU GLN LEU GLY HIS PHE VAL LYS ARG ILE LYS GLY SEQRES 18 D 301 TYR SER LEU ALA ASP SER GLN HIS LEU PHE ALA VAL LEU SEQRES 19 D 301 GLN GLY HIS VAL THR ARG LEU GLU ASN THR VAL ARG TRP SEQRES 20 D 301 ARG TRP GLU ALA GLY ASP VAL ALA ILE TRP ASP ASN ARG SEQRES 21 D 301 ALA THR GLN HIS TYR ALA VAL ASP ASP TYR GLY THR GLN SEQRES 22 D 301 PRO ARG ILE VAL ARG ARG VAL THR LEU ALA GLY GLU VAL SEQRES 23 D 301 PRO VAL GLY VAL ASP GLY GLN LEU SER ARG THR THR ARG SEQRES 24 D 301 LYS GLY HET C26 A1300 13 HET AKG A1301 10 HET FE2 A1302 1 HET AKG D1300 10 HET C26 D1301 13 HET FE2 D1302 1 HETNAM C26 (2R)-2-ETHYL-1-HEXANESULFONIC ACID HETNAM AKG 2-OXOGLUTARIC ACID HETNAM FE2 FE (II) ION FORMUL 3 C26 2(C8 H18 O4 S) FORMUL 4 AKG 2(C5 H6 O5) FORMUL 5 FE2 2(FE 2+) FORMUL 9 HOH *245(H2 O) HELIX 1 1 ASP A 38 LYS A 53 1 16 HELIX 2 2 ASP A 64 LEU A 74 1 11 HELIX 3 3 THR A 140 GLU A 146 1 7 HELIX 4 4 PRO A 148 ASP A 156 1 9 HELIX 5 5 SER A 223 THR A 239 1 17 HELIX 6 6 ARG A 240 GLU A 242 5 3 HELIX 7 7 ASP D 38 LYS D 53 1 16 HELIX 8 8 ASP D 64 LEU D 74 1 11 HELIX 9 9 THR D 140 GLU D 146 1 7 HELIX 10 10 PRO D 148 ASP D 156 1 9 HELIX 11 11 SER D 223 ARG D 240 1 18 SHEET 1 AA 6 ASP A 16 PRO A 19 0 SHEET 2 AA 6 ALA A 26 ARG A 29 -1 O GLU A 27 N HIS A 18 SHEET 3 AA 6 VAL A 54 PHE A 57 1 O VAL A 54 N ALA A 26 SHEET 4 AA 6 VAL A 254 ASP A 258 -1 O VAL A 254 N PHE A 57 SHEET 5 AA 6 ALA A 120 VAL A 127 -1 O SER A 121 N TRP A 257 SHEET 6 AA 6 ILE A 276 LEU A 282 -1 O ILE A 276 N VAL A 126 SHEET 1 AB 3 THR A 244 TRP A 247 0 SHEET 2 AB 3 THR A 135 ASN A 139 -1 O THR A 135 N TRP A 247 SHEET 3 AB 3 THR A 262 ALA A 266 -1 O GLN A 263 N ALA A 138 SHEET 1 AC 4 VAL A 216 ILE A 219 0 SHEET 2 AC 4 TRP A 159 SER A 163 -1 O VAL A 161 N LYS A 217 SHEET 3 AC 4 GLU A 193 PRO A 197 -1 O THR A 194 N HIS A 162 SHEET 4 AC 4 ARG A 296 ARG A 299 -1 O ARG A 296 N GLU A 195 SHEET 1 AD 2 VAL A 199 VAL A 201 0 SHEET 2 AD 2 ARG A 208 LEU A 210 -1 O ALA A 209 N ARG A 200 SHEET 1 DA 7 ASP D 16 PRO D 19 0 SHEET 2 DA 7 ALA D 26 ARG D 29 -1 O GLU D 27 N HIS D 18 SHEET 3 DA 7 VAL D 54 PHE D 57 1 O VAL D 54 N ALA D 26 SHEET 4 DA 7 VAL D 254 ASP D 258 -1 O VAL D 254 N PHE D 57 SHEET 5 DA 7 ALA D 120 VAL D 127 -1 O SER D 121 N TRP D 257 SHEET 6 DA 7 ILE D 276 LEU D 282 -1 O ILE D 276 N VAL D 126 SHEET 7 DA 7 LEU D 94 LEU D 96 -1 O LEU D 94 N ARG D 279 SHEET 1 DB 3 THR D 244 TRP D 247 0 SHEET 2 DB 3 THR D 135 ASN D 139 -1 O THR D 135 N TRP D 247 SHEET 3 DB 3 THR D 262 ALA D 266 -1 O GLN D 263 N ALA D 138 SHEET 1 DC 4 VAL D 216 ILE D 219 0 SHEET 2 DC 4 TRP D 159 SER D 163 -1 O VAL D 161 N LYS D 217 SHEET 3 DC 4 GLU D 193 PRO D 197 -1 O THR D 194 N HIS D 162 SHEET 4 DC 4 ARG D 296 ARG D 299 -1 O ARG D 296 N GLU D 195 SHEET 1 DD 2 VAL D 199 VAL D 201 0 SHEET 2 DD 2 ARG D 208 LEU D 210 -1 O ALA D 209 N ARG D 200 LINK NE2 HIS A 108 FE FE2 A1302 1555 1555 2.19 LINK OD2 ASP A 110 FE FE2 A1302 1555 1555 1.94 LINK NE2 HIS A 264 FE FE2 A1302 1555 1555 2.14 LINK O2 AKG A1301 FE FE2 A1302 1555 1555 2.20 LINK O5 AKG A1301 FE FE2 A1302 1555 1555 2.00 LINK NE2 HIS D 108 FE FE2 D1302 1555 1555 2.20 LINK OD2 ASP D 110 FE FE2 D1302 1555 1555 1.92 LINK NE2 HIS D 264 FE FE2 D1302 1555 1555 2.01 LINK O2 AKG D1300 FE FE2 D1302 1555 1555 2.03 LINK O5 AKG D1300 FE FE2 D1302 1555 1555 1.94 SITE 1 AC1 6 HIS A 108 ASP A 110 HIS A 264 ARG A 279 SITE 2 AC1 6 C26 A1300 AKG A1301 SITE 1 AC2 6 HIS D 108 ASP D 110 HIS D 264 ARG D 279 SITE 2 AC2 6 AKG D1300 C26 D1301 SITE 1 AC3 7 HIS A 81 ALA A 104 ASP A 110 VAL A 111 SITE 2 AC3 7 PHE A 215 ARG A 279 FE2 A1302 SITE 1 AC4 10 ALA A 104 HIS A 108 ASP A 110 THR A 135 SITE 2 AC4 10 HIS A 264 ALA A 266 ARG A 275 ARG A 279 SITE 3 AC4 10 FE2 A1302 HOH A2119 SITE 1 AC5 11 HIS D 108 ASP D 110 LEU D 123 THR D 135 SITE 2 AC5 11 TRP D 257 HIS D 264 ALA D 266 ARG D 275 SITE 3 AC5 11 ARG D 279 FE2 D1302 HOH D2126 SITE 1 AC6 7 HIS D 81 ALA D 104 HIS D 108 ASP D 110 SITE 2 AC6 7 VAL D 111 ARG D 279 FE2 D1302 CRYST1 72.027 141.892 161.718 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013884 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006184 0.00000 MTRIX1 1 -1.000000 0.016000 0.016000 1.24234 1 MTRIX2 1 0.009000 -0.373000 0.928000 0.41967 1 MTRIX3 1 0.021000 0.928000 0.372000 -0.25731 1