PDB Short entry for 1OO2 HEADER TRANSPORT PROTEIN 03-MAR-03 1OO2 TITLE CRYSTAL STRUCTURE OF TRANSTHYRETIN FROM SPARUS AURATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPARUS AURATA; SOURCE 3 ORGANISM_COMMON: GILTHEAD SEABREAM; SOURCE 4 ORGANISM_TAXID: 8175; SOURCE 5 GENE: TTR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS TRANSTHYRETIN, RETINOL-BINDING PROTEIN, TETRAMER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.PASQUATO,I.RAMAZZINA,C.FOLLI,R.BATTISTUTTA,R.BERNI,G.ZANOTTI REVDAT 3 16-AUG-23 1OO2 1 REMARK LINK REVDAT 2 24-FEB-09 1OO2 1 VERSN REVDAT 1 20-JAN-04 1OO2 0 JRNL AUTH C.FOLLI,N.PASQUATO,I.RAMAZZINA,R.BATTISTUTTA,G.ZANOTTI, JRNL AUTH 2 R.BERNI JRNL TITL DISTINCTIVE BINDING AND STRUCTURAL PROPERTIES OF PISCINE JRNL TITL 2 TRANSTHYRETIN. JRNL REF FEBS LETT. V. 555 279 2003 JRNL REFN ISSN 0014-5793 JRNL PMID 14644428 JRNL DOI 10.1016/S0014-5793(03)01248-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.HORNBERG,ENEQVIST,T.,A.OLOFSSON,E.LUNDGREN, REMARK 1 AUTH 2 A.E.SAUER-ERIKSSON REMARK 1 TITL A COMPARATIVE ANALYSIS OF 23 STRUCTURES OF THE AMYLOIDOGENIC REMARK 1 TITL 2 PROTEIN TRANSTHYRETIN REMARK 1 REF J.MOL.BIOL. V. 302 649 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2000.4078 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.L.MONACO,M.RIZZI,A.CODA REMARK 1 TITL STRUCTURE OF A COMPLEX OF TWO PLASMA PROTEINS: TRANSTHYRETIN REMARK 1 TITL 2 AND RETINOL-BINDING PROTEIN REMARK 1 REF SCIENCE V. 268 1039 1995 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.NAYLOR,M.E.NEWCOMER REMARK 1 TITL THE STRUCTURE OF HUMAN RETINOL-BINDING PROTEIN (RBP) WITH REMARK 1 TITL 2 ITS CARRIER PROTEIN TRANSTHYRETIN REVEALS AN INTERACTION REMARK 1 TITL 3 WITH THE CARBOXY TERMINUS OF RBP REMARK 1 REF BIOCHEMISTRY V. 38 2647 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI982291I REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.194 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.197 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 11.100 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 6040 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 54369 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.190 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.193 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 11.100 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 5398 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 48594 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3891.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 15579 REMARK 3 NUMBER OF RESTRAINTS : 14689 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 ANGLE DISTANCES (A) : 0.020 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.028 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.056 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.059 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.077 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.077 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC SCALING APPLIED BY THE REMARK 3 METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56 REMARK 4 REMARK 4 1OO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60660 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.559 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.05500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.17400 REMARK 200 R SYM FOR SHELL (I) : 0.14600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1F41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, CADMIO CHLORIDE, SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.22600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.81100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.22600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.81100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TETRAMER IN THE ASYMMETRIC UNIT IS THE BIOLOGICAL REMARK 300 ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OE1 GLU A 100 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 208 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 125 REMARK 465 HIS A 126 REMARK 465 GLU A 127 REMARK 465 VAL B 125 REMARK 465 HIS B 126 REMARK 465 GLU B 127 REMARK 465 VAL C 125 REMARK 465 HIS C 126 REMARK 465 GLU C 127 REMARK 465 VAL D 125 REMARK 465 HIS D 126 REMARK 465 GLU D 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLU A 100 OE1 GLU A 100 2655 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 100 CD GLU A 100 OE1 0.772 REMARK 500 GLU A 100 CD GLU A 100 OE2 0.773 REMARK 500 SER A 124 C SER A 124 O 0.450 REMARK 500 SER B 124 C SER B 124 O 1.571 REMARK 500 SER C 124 C SER C 124 O 2.051 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 100 OE1 - CD - OE2 ANGL. DEV. = -54.5 DEGREES REMARK 500 GLU A 100 CG - CD - OE1 ANGL. DEV. = -19.0 DEGREES REMARK 500 GLU A 100 CG - CD - OE2 ANGL. DEV. = -19.0 DEGREES REMARK 500 TYR B 116 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 SER B 124 CA - C - O ANGL. DEV. = -18.4 DEGREES REMARK 500 HIS C 98 C - N - CA ANGL. DEV. = 23.0 DEGREES REMARK 500 SER C 124 CA - C - O ANGL. DEV. = -61.9 DEGREES REMARK 500 SER D 124 CA - C - O ANGL. DEV. = -40.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 98 -66.55 -121.82 REMARK 500 PRO A 99 108.27 -6.03 REMARK 500 SER A 123 -169.97 -77.53 REMARK 500 PHE B 64 62.30 -117.52 REMARK 500 GLU B 100 -51.36 -125.79 REMARK 500 HIS B 102 -152.87 -86.83 REMARK 500 HIS C 98 62.83 -0.14 REMARK 500 GLU C 100 -78.39 -49.81 REMARK 500 HIS C 102 -100.92 -82.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 100 0.42 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 401 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 38 OD2 REMARK 620 2 HOH A 134 O 75.7 REMARK 620 3 GLU C 72 OE1 83.9 98.7 REMARK 620 4 HOH C 425 O 92.9 105.4 154.2 REMARK 620 5 HOH C 467 O 174.7 99.4 95.1 90.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 402 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 61 OE2 REMARK 620 2 GLU C 61 OE1 60.5 REMARK 620 3 HIS C 104 NE2 152.9 105.6 REMARK 620 4 HOH C 470 O 93.0 151.3 103.0 REMARK 620 5 HOH C 479 O 72.4 93.4 86.2 88.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FHN RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (MUTANT) REMARK 900 RELATED ID: 1F41 RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN REMARK 900 RELATED ID: 1RLB RELATED DB: PDB REMARK 900 TRANSTHYRETIN-RBP COMPLEX REMARK 900 RELATED ID: 1QAB RELATED DB: PDB REMARK 900 TRANSTHYRETIN-RBP COMPLEX REMARK 900 RELATED ID: 1IE4 RELATED DB: PDB REMARK 900 RAT TRANSTHYRETIN COMPLEX WITH THYROXINE (T4) DBREF 1OO2 A 9 127 UNP O93330 O93330_SPAAU 32 150 DBREF 1OO2 B 9 127 UNP O93330 O93330_SPAAU 32 150 DBREF 1OO2 C 9 127 UNP O93330 O93330_SPAAU 32 150 DBREF 1OO2 D 9 127 UNP O93330 O93330_SPAAU 32 150 SEQRES 1 A 119 ARG CYS PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS SEQRES 2 A 119 GLY THR PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN SEQRES 3 A 119 LYS THR ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY SEQRES 4 A 119 VAL THR ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR SEQRES 5 A 119 GLU GLN GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE SEQRES 6 A 119 ASP THR LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO SEQRES 7 A 119 PHE HIS GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO SEQRES 8 A 119 GLU GLY HIS GLY HIS TYR THR LEU ALA LEU LEU LEU SER SEQRES 9 A 119 PRO PHE SER TYR THR THR THR ALA VAL VAL SER SER VAL SEQRES 10 A 119 HIS GLU SEQRES 1 B 119 ARG CYS PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS SEQRES 2 B 119 GLY THR PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN SEQRES 3 B 119 LYS THR ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY SEQRES 4 B 119 VAL THR ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR SEQRES 5 B 119 GLU GLN GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE SEQRES 6 B 119 ASP THR LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO SEQRES 7 B 119 PHE HIS GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO SEQRES 8 B 119 GLU GLY HIS GLY HIS TYR THR LEU ALA LEU LEU LEU SER SEQRES 9 B 119 PRO PHE SER TYR THR THR THR ALA VAL VAL SER SER VAL SEQRES 10 B 119 HIS GLU SEQRES 1 C 119 ARG CYS PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS SEQRES 2 C 119 GLY THR PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN SEQRES 3 C 119 LYS THR ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY SEQRES 4 C 119 VAL THR ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR SEQRES 5 C 119 GLU GLN GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE SEQRES 6 C 119 ASP THR LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO SEQRES 7 C 119 PHE HIS GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO SEQRES 8 C 119 GLU GLY HIS GLY HIS TYR THR LEU ALA LEU LEU LEU SER SEQRES 9 C 119 PRO PHE SER TYR THR THR THR ALA VAL VAL SER SER VAL SEQRES 10 C 119 HIS GLU SEQRES 1 D 119 ARG CYS PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS SEQRES 2 D 119 GLY THR PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN SEQRES 3 D 119 LYS THR ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY SEQRES 4 D 119 VAL THR ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR SEQRES 5 D 119 GLU GLN GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE SEQRES 6 D 119 ASP THR LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO SEQRES 7 D 119 PHE HIS GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO SEQRES 8 D 119 GLU GLY HIS GLY HIS TYR THR LEU ALA LEU LEU LEU SER SEQRES 9 D 119 PRO PHE SER TYR THR THR THR ALA VAL VAL SER SER VAL SEQRES 10 D 119 HIS GLU HET CD C 401 1 HET CD C 402 1 HETNAM CD CADMIUM ION FORMUL 5 CD 2(CD 2+) FORMUL 7 HOH *365(H2 O) HELIX 1 1 THR A 60 PHE A 64 5 5 HELIX 2 2 ASP A 74 GLN A 82 1 9 HELIX 3 3 THR B 60 PHE B 64 5 5 HELIX 4 4 ASP B 74 GLY B 83 1 10 HELIX 5 5 THR C 60 PHE C 64 5 5 HELIX 6 6 ASP C 74 GLY C 83 1 10 HELIX 7 7 THR D 60 PHE D 64 5 5 HELIX 8 8 ASP D 74 GLY D 83 1 10 SHEET 1 A 8 THR A 23 PRO A 24 0 SHEET 2 A 8 LEU A 12 ASP A 18 -1 N ASP A 18 O THR A 23 SHEET 3 A 8 TYR A 105 SER A 112 1 O TYR A 105 N MET A 13 SHEET 4 A 8 SER A 115 VAL A 122 -1 O SER A 115 N SER A 112 SHEET 5 A 8 SER B 115 SER B 123 -1 O THR B 118 N TYR A 116 SHEET 6 A 8 HIS B 104 SER B 112 -1 N HIS B 104 O SER B 123 SHEET 7 A 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 A 8 THR B 23 PRO B 24 -1 O THR B 23 N ASP B 18 SHEET 1 B 8 TRP A 41 VAL A 48 0 SHEET 2 B 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 B 8 GLY A 67 PHE A 73 -1 O ARG A 70 N SER A 33 SHEET 4 B 8 HIS A 88 ALA A 97 -1 O ALA A 91 N PHE A 73 SHEET 5 B 8 HIS B 88 ALA B 97 -1 O GLU B 89 N VAL A 94 SHEET 6 B 8 GLY B 67 PHE B 73 -1 N GLY B 67 O ALA B 97 SHEET 7 B 8 ALA B 29 LYS B 35 -1 N SER B 33 O ARG B 70 SHEET 8 B 8 TRP B 41 VAL B 48 -1 O ALA B 45 N VAL B 32 SHEET 1 C 8 THR C 23 PRO C 24 0 SHEET 2 C 8 LEU C 12 ASP C 18 -1 N ASP C 18 O THR C 23 SHEET 3 C 8 HIS C 104 SER C 112 1 O TYR C 105 N MET C 13 SHEET 4 C 8 SER C 115 SER C 123 -1 O SER C 123 N HIS C 104 SHEET 5 C 8 SER D 115 VAL D 122 -1 O THR D 118 N TYR C 116 SHEET 6 C 8 TYR D 105 SER D 112 -1 N LEU D 110 O THR D 117 SHEET 7 C 8 LEU D 12 ASP D 18 1 N LEU D 17 O LEU D 111 SHEET 8 C 8 THR D 23 PRO D 24 -1 O THR D 23 N ASP D 18 SHEET 1 D 8 TRP C 41 VAL C 48 0 SHEET 2 D 8 ALA C 29 LYS C 35 -1 N VAL C 32 O ALA C 45 SHEET 3 D 8 GLY C 67 PHE C 73 -1 O ARG C 70 N SER C 33 SHEET 4 D 8 HIS C 88 ALA C 97 -1 O ALA C 97 N GLY C 67 SHEET 5 D 8 HIS D 88 ALA D 97 -1 O GLU D 89 N VAL C 94 SHEET 6 D 8 GLY D 67 PHE D 73 -1 N PHE D 73 O ALA D 91 SHEET 7 D 8 ALA D 29 LYS D 35 -1 N LYS D 31 O GLU D 72 SHEET 8 D 8 TRP D 41 VAL D 48 -1 O ILE D 44 N VAL D 32 LINK OD2 ASP A 38 CD CD C 401 3455 1555 2.09 LINK O HOH A 134 CD CD C 401 3455 1555 2.52 LINK OE2 GLU C 61 CD CD C 402 1555 1555 2.23 LINK OE1 GLU C 61 CD CD C 402 1555 1555 2.14 LINK OE1 GLU C 72 CD CD C 401 1555 1555 2.42 LINK NE2 HIS C 104 CD CD C 402 1555 1555 2.28 LINK CD CD C 401 O HOH C 425 1555 1555 2.37 LINK CD CD C 401 O HOH C 467 1555 1555 2.60 LINK CD CD C 402 O HOH C 470 1555 1555 2.41 LINK CD CD C 402 O HOH C 479 1555 1555 2.59 CISPEP 1 GLY C 101 HIS C 102 0 -0.15 SITE 1 AC1 5 ASP A 38 HOH A 134 GLU C 72 HOH C 425 SITE 2 AC1 5 HOH C 467 SITE 1 AC2 4 GLU C 61 HIS C 104 HOH C 470 HOH C 479 CRYST1 96.452 65.622 70.834 90.00 97.40 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010368 0.000000 0.001347 0.00000 SCALE2 0.000000 0.015239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014236 0.00000