PDB Short entry for 1OV1 HEADER SIGNALING PROTEIN 25-MAR-03 1OV1 TITLE CALCULATED 3D MODEL OF AN ACTIVATED "STRAITJACKED" RHODOPSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 GENE: RHO; SOURCE 5 EXPRESSION_SYSTEM: COS-1 CELLS; SOURCE 6 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1650; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PMT3 KEYWDS RHODOPSIN MUTANT, STRAITJACKETED RHODOPSIN EXPDTA THEORETICAL MODEL AUTHOR G.V.NIKIFOROVICH REVDAT 2 12-AUG-03 1OV1 1 JRNL REVDAT 1 15-JUL-03 1OV1 0 JRNL AUTH G.V.NIKIFOROVICH,G.R.MARSHALL JRNL TITL THREE-DIMENSIONAL MODEL FOR META-II RHODOPSIN, AN JRNL TITL 2 ACTIVATED G-PROTEIN-COUPLED RECEPTOR JRNL REF BIOCHEMISTRY V. 42 9110 2003 JRNL REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CHIEF 2003 REMARK 3 AUTHORS : NIKIFOROVICH G.V., BALODIS J. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ECEPP FORCE FIELD REMARK 4 REMARK 4 1OV1 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-2003. REMARK 100 THE RCSB ID CODE IS RCSB018692. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS STRUCTURE HAS BEEN CALCULATED STARTING FROM THE 3D REMARK 220 MODEL FOR ACTIVATED RHODOPSIN (SEE PDB ENTRY 1OV0) REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 -72.95 69.10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 52 PRO A 53 -144.19 REMARK 500 LEU A 266 PRO A 267 -146.07 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OV0 RELATED DB: PDB REMARK 900 3D MODEL OF AN ACTIVATED RHODOPSIN DBREF 1OV1 A 1 348 UNP P02699 OPSD_BOVIN 1 348 SEQADV 1OV1 CYS A 65 UNP P02699 HIS 65 ENGINEERED SEQADV 1OV1 CYS A 204 UNP P02699 VAL 204 ENGINEERED SEQADV 1OV1 CYS A 225 UNP P02699 GLN 225 ENGINEERED SEQADV 1OV1 CYS A 276 UNP P02699 PHE 276 ENGINEERED SEQRES 1 A 348 MET ASN GLY THR GLU GLY PRO ASN PHE TYR VAL PRO PHE SEQRES 2 A 348 SER ASN LYS THR GLY VAL VAL ARG SER PRO PHE GLU ALA SEQRES 3 A 348 PRO GLN TYR TYR LEU ALA GLU PRO TRP GLN PHE SER MET SEQRES 4 A 348 LEU ALA ALA TYR MET PHE LEU LEU ILE MET LEU GLY PHE SEQRES 5 A 348 PRO ILE ASN PHE LEU THR LEU TYR VAL THR VAL GLN CYS SEQRES 6 A 348 LYS LYS LEU ARG THR PRO LEU ASN TYR ILE LEU LEU ASN SEQRES 7 A 348 LEU ALA VAL ALA ASP LEU PHE MET VAL PHE GLY GLY PHE SEQRES 8 A 348 THR THR THR LEU TYR THR SER LEU HIS GLY TYR PHE VAL SEQRES 9 A 348 PHE GLY PRO THR GLY CYS ASN LEU GLU GLY PHE PHE ALA SEQRES 10 A 348 THR LEU GLY GLY GLU ILE ALA LEU TRP SER LEU VAL VAL SEQRES 11 A 348 LEU ALA ILE GLU ARG TYR VAL VAL VAL CYS LYS PRO MET SEQRES 12 A 348 SER ASN PHE ARG PHE GLY GLU ASN HIS ALA ILE MET GLY SEQRES 13 A 348 VAL ALA PHE THR TRP VAL MET ALA LEU ALA CYS ALA ALA SEQRES 14 A 348 PRO PRO LEU VAL GLY TRP SER ARG TYR ILE PRO GLU GLY SEQRES 15 A 348 MET GLN CYS SER CYS GLY ILE ASP TYR TYR THR PRO HIS SEQRES 16 A 348 GLU GLU THR ASN ASN GLU SER PHE CYS ILE TYR MET PHE SEQRES 17 A 348 VAL VAL HIS PHE ILE ILE PRO LEU ILE VAL ILE PHE PHE SEQRES 18 A 348 CYS TYR GLY CYS LEU VAL PHE THR VAL LYS GLU ALA ALA SEQRES 19 A 348 ALA GLN GLN GLN GLU SER ALA THR THR GLN LYS ALA GLU SEQRES 20 A 348 LYS GLU VAL THR ARG MET VAL ILE ILE MET VAL ILE ALA SEQRES 21 A 348 PHE LEU ILE CYS TRP LEU PRO TYR ALA GLY VAL ALA PHE SEQRES 22 A 348 TYR ILE CYS THR HIS GLN GLY SER ASP PHE GLY PRO ILE SEQRES 23 A 348 PHE MET THR ILE PRO ALA PHE PHE ALA LYS THR SER ALA SEQRES 24 A 348 VAL TYR ASN PRO VAL ILE TYR ILE MET MET ASN LYS GLN SEQRES 25 A 348 PHE ARG ASN CYS MET VAL THR THR LEU CYS CYS GLY LYS SEQRES 26 A 348 ASN PRO LEU GLY ASP ASP GLU ALA SER THR THR VAL SER SEQRES 27 A 348 LYS THR GLU THR SER GLN VAL ALA PRO ALA HET RET A 400 20 HETNAM RET RETINAL FORMUL 2 RET C20 H28 O HELIX 1 1 GLU A 33 LEU A 50 1 18 HELIX 2 2 GLY A 51 CYS A 65 1 15 HELIX 3 3 THR A 70 LEU A 76 1 7 HELIX 4 4 LEU A 76 PHE A 88 1 13 HELIX 5 5 GLY A 89 GLY A 101 1 13 HELIX 6 6 PHE A 105 CYS A 140 1 36 HELIX 7 7 GLY A 149 ALA A 166 1 18 HELIX 8 8 ALA A 168 VAL A 173 1 6 HELIX 9 9 HIS A 195 THR A 198 5 4 HELIX 10 10 ASN A 199 HIS A 211 1 13 HELIX 11 11 ILE A 213 GLY A 224 1 12 HELIX 12 12 CYS A 225 PHE A 228 5 4 HELIX 13 13 GLN A 244 TRP A 265 1 22 HELIX 14 14 LEU A 266 HIS A 278 1 13 HELIX 15 15 GLY A 284 MET A 288 5 5 HELIX 16 16 THR A 289 THR A 297 1 9 HELIX 17 17 THR A 297 ASN A 310 1 14 HELIX 18 18 ASN A 310 LEU A 321 1 12 HELIX 19 19 ASN A 326 ASP A 331 1 6 SHEET 1 A 2 ILE A 179 GLU A 181 0 SHEET 2 A 2 SER A 186 GLY A 188 -1 O SER A 186 N GLU A 181 SSBOND 1 CYS A 65 CYS A 316 SSBOND 2 CYS A 110 CYS A 187 SSBOND 3 CYS A 140 CYS A 225 SSBOND 4 CYS A 204 CYS A 276 LINK NZ LYS A 296 C15 RET A 400 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000