PDB Short entry for 1P0L HEADER RIBOSOME 10-APR-03 1P0L TITLE HP (2-20) SUBSTITUTION GLN TO TRP MODIFICATION IN SDS-D25 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 19-MER PEPTIDE FROM 50S RIBOSOMAL PROTEIN L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RIBOSOMAL PROTEIN L1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 FOR THIS PEPTIDE WHICH N-TERMINUS OF HELICOBACTER PYLORI RIBOSOMAL SOURCE 5 PROTEIN L1 KEYWDS COIL-HELIX-COIL, RIBOSOME EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.H.LEE,D.G.LEE,Y.K.PARK,K.S.HARM,Y.M.KIM REVDAT 3 10-NOV-21 1P0L 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1P0L 1 VERSN REVDAT 1 20-MAY-03 1P0L 0 JRNL AUTH K.H.LEE,D.G.LEE,Y.K.PARK,K.S.HARM,Y.M.KIM JRNL TITL INTERACTIONS BETWEEN ANTIMICROBIAL PEPTIDE, HP(2-20) DERIVED JRNL TITL 2 FROM HELICOBACTER PYLORI, AND MEMBRAIN STUDIED BY NMR JRNL TITL 3 SPECTROSCOPY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 95.0, CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P0L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018868. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5MM PEPTIDE; 150MM SDS-D25 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY REMARK 210 -DYNAMICAL SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 4 LYS A 3 37.43 -175.58 REMARK 500 7 LYS A 2 32.08 -99.98 REMARK 500 7 LYS A 3 37.12 -100.00 REMARK 500 9 LYS A 2 38.67 -97.36 REMARK 500 9 LYS A 3 39.06 -143.90 REMARK 500 11 LYS A 2 31.54 -99.95 REMARK 500 11 LYS A 3 37.13 38.96 REMARK 500 13 LYS A 2 30.49 -98.65 REMARK 500 15 LYS A 2 32.23 -98.19 REMARK 500 16 LYS A 2 53.96 -100.08 REMARK 500 16 LYS A 3 38.93 -95.80 REMARK 500 18 LYS A 3 37.95 -176.39 REMARK 500 19 LYS A 3 35.87 -158.88 REMARK 500 20 LYS A 3 38.44 -170.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 20 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P0G RELATED DB: PDB REMARK 900 HP (2-20) REMARK 900 RELATED ID: 1P0J RELATED DB: PDB REMARK 900 HP (2-20) ANALOGUE 1 REMARK 900 RELATED ID: 1P0O RELATED DB: PDB REMARK 900 HP (2-20) ANALOGUE 3 DBREF 1P0L A 1 19 UNP Q9ZK21 RL1_HELPJ 2 20 SEQADV 1P0L TRP A 16 UNP Q9ZK21 GLN 17 ENGINEERED MUTATION SEQRES 1 A 20 ALA LYS LYS VAL PHE LYS ARG LEU GLU LYS LEU PHE SER SEQRES 2 A 20 LYS ILE TRP ASN ASP LYS NH2 HET NH2 A 20 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 1 VAL A 4 LYS A 19 1 16 LINK C LYS A 19 N NH2 A 20 1555 1555 1.33 SITE 1 AC1 2 ASP A 18 LYS A 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000