PDB Short entry for 1P0W HEADER OXIDOREDUCTASE 11-APR-03 1P0W TITLE F393W MUTANT HEME DOMAIN OF FLAVOCYTOCHROME P450 BM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL P-450:NADPH-P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEME DOMAIN, RESIDUES 1-455 OF SWS P14779; COMPND 5 SYNONYM: HEME DOMAIN OF FLAVOCYTOCHROME P450 BM3; CYTOCHROME P450(BM- COMPND 6 3); P450BM-3; COMPND 7 EC: 1.14.14.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: CYP102A21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TG1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJM20 KEYWDS CYTOCHROME P450, FATTY ACID HYDROXYLASE, MONOOXYGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.W.B.OST,J.CLARK,C.S.MILES,M.D.WALKINSHAW,G.A.REID,S.K.CHAPMAN, AUTHOR 2 S.DAFF,C.G.MOWAT REVDAT 4 16-AUG-23 1P0W 1 REMARK REVDAT 3 27-OCT-21 1P0W 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1P0W 1 VERSN REVDAT 1 09-DEC-03 1P0W 0 JRNL AUTH T.W.B.OST,J.CLARK,C.G.MOWAT,C.S.MILES,M.D.WALKINSHAW, JRNL AUTH 2 G.A.REID,S.K.CHAPMAN,S.DAFF JRNL TITL OXYGEN ACTIVATION AND ELECTRON TRANSFER IN FLAVOCYTOCHROME JRNL TITL 2 P450 BM3 JRNL REF J.AM.CHEM.SOC. V. 125 15010 2003 JRNL REFN ISSN 0002-7863 JRNL PMID 14653735 JRNL DOI 10.1021/JA035731O REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 69162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 3673 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7087 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 1420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.012 ; NULL REMARK 3 ANGLE DISTANCE (A) : 2.400 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ID 2HPD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, PIPES, MAGNESIUM SULFATE , REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 76.76900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ILE A 2 REMARK 465 GLN A 189 REMARK 465 ARG A 190 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 PRO A 193 REMARK 465 ASP A 194 REMARK 465 ASP A 195 REMARK 465 PRO A 196 REMARK 465 ALA A 197 REMARK 465 TYR A 198 REMARK 465 ASP A 199 REMARK 465 GLU A 200 REMARK 465 THR B 1 REMARK 465 ILE B 2 REMARK 465 ALA B 191 REMARK 465 ASN B 192 REMARK 465 PRO B 193 REMARK 465 ASP B 194 REMARK 465 ASP B 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 GLU A 35 CD OE1 OE2 REMARK 470 LYS A 41 CE NZ REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 136 CG OD1 OD2 REMARK 470 LYS A 202 CE NZ REMARK 470 LYS A 210 CD CE NZ REMARK 470 LYS A 218 CD CE NZ REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 LYS A 306 NZ REMARK 470 GLU A 380 CG CD OE1 OE2 REMARK 470 LYS A 447 CE NZ REMARK 470 LYS A 449 CG CD CE NZ REMARK 470 LYS A 452 CD CE NZ REMARK 470 LEU A 455 O REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 ARG B 47 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 59 CD CE NZ REMARK 470 GLN B 169 CG CD OE1 NE2 REMARK 470 ARG B 203 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 LYS B 218 CE NZ REMARK 470 GLU B 228 CD OE1 OE2 REMARK 470 GLU B 430 CD OE1 OE2 REMARK 470 LYS B 449 CG CD CE NZ REMARK 470 LYS B 452 CE NZ REMARK 470 LEU B 455 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 505 O HOH B 1174 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 68 CB - CG - OD1 ANGL. DEV. = 9.5 DEGREES REMARK 500 GLU A 143 OE1 - CD - OE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 147 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 167 CG - CD - NE ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 167 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLU A 267 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 296 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 296 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 323 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLU A 352 OE1 - CD - OE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 THR B 49 CA - CB - CG2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG B 50 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 50 NE - CZ - NH2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG B 66 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 66 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 68 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 132 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 147 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 147 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP B 151 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 151 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 190 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP B 250 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ILE B 263 CA - CB - CG2 ANGL. DEV. = 13.1 DEGREES REMARK 500 LYS B 309 CD - CE - NZ ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG B 323 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 323 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 369 CB - CG - OD2 ANGL. DEV. = 10.1 DEGREES REMARK 500 ASP B 370 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 378 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 378 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 398 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 VAL B 445 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 -179.72 -69.68 REMARK 500 LYS A 15 -129.61 55.23 REMARK 500 ASP A 84 39.38 -97.55 REMARK 500 PHE A 158 27.58 -147.21 REMARK 500 ASP A 370 34.77 -83.88 REMARK 500 THR A 436 -120.80 -136.24 REMARK 500 LYS B 15 -134.24 58.86 REMARK 500 ASP B 84 43.42 -98.96 REMARK 500 PHE B 158 29.05 -150.39 REMARK 500 ASP B 370 40.38 -78.06 REMARK 500 THR B 436 -123.40 -134.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 436 -10.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 460 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 460 NA 100.1 REMARK 620 3 HEM A 460 NB 91.1 90.4 REMARK 620 4 HEM A 460 NC 89.7 170.2 89.0 REMARK 620 5 HEM A 460 ND 98.8 90.0 169.8 88.8 REMARK 620 6 HOH A 480 O 171.3 76.5 81.0 93.8 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 460 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 460 NA 101.1 REMARK 620 3 HEM B 460 NB 88.7 89.9 REMARK 620 4 HEM B 460 NC 88.4 170.5 90.2 REMARK 620 5 HEM B 460 ND 100.5 86.8 170.7 91.7 REMARK 620 6 HOH B 615 O 175.2 77.3 86.8 93.2 84.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 460 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JME RELATED DB: PDB REMARK 900 F393H MUTANT REMARK 900 RELATED ID: 1P0V RELATED DB: PDB REMARK 900 F393A MUTANT REMARK 900 RELATED ID: 1P0X RELATED DB: PDB REMARK 900 F393Y MUTANT DBREF 1P0W A 1 455 UNP P14779 CPXB_BACME 1 455 DBREF 1P0W B 1 455 UNP P14779 CPXB_BACME 1 455 SEQADV 1P0W TRP A 393 UNP P14779 PHE 393 ENGINEERED MUTATION SEQADV 1P0W TRP B 393 UNP P14779 PHE 393 ENGINEERED MUTATION SEQRES 1 A 455 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 A 455 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 A 455 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 A 455 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 A 455 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 A 455 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 A 455 ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR SEQRES 8 A 455 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 A 455 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 A 455 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 A 455 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 A 455 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 A 455 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 A 455 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 A 455 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 A 455 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 A 455 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 A 455 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 A 455 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 A 455 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 A 455 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 A 455 SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL SEQRES 23 A 455 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 A 455 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 A 455 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 A 455 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 A 455 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 A 455 GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 A 455 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 A 455 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 A 455 LYS PRO TRP GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 A 455 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 A 455 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 A 455 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 A 455 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 1 B 455 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 B 455 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 B 455 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 B 455 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 B 455 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 B 455 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 B 455 ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR SEQRES 8 B 455 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 B 455 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 B 455 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 B 455 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 B 455 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 B 455 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 B 455 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 B 455 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 B 455 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 B 455 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 B 455 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 B 455 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 B 455 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 B 455 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 B 455 SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL SEQRES 23 B 455 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 B 455 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 B 455 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 B 455 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 B 455 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 B 455 GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 B 455 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 B 455 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 B 455 LYS PRO TRP GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 B 455 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 B 455 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 B 455 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 B 455 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU HET HEM A 460 43 HET HEM B 460 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *1420(H2 O) HELIX 1 1 PHE A 11 LYS A 15 5 5 HELIX 2 2 ASN A 16 ASN A 21 5 6 HELIX 3 3 LYS A 24 GLY A 37 1 14 HELIX 4 4 SER A 54 CYS A 62 1 9 HELIX 5 5 SER A 72 GLY A 83 1 12 HELIX 6 6 GLU A 93 LEU A 104 1 12 HELIX 7 7 PRO A 105 PHE A 107 5 3 HELIX 8 8 SER A 108 ARG A 132 1 25 HELIX 9 9 VAL A 141 ASN A 159 1 19 HELIX 10 10 ASN A 163 ARG A 167 5 5 HELIX 11 11 HIS A 171 LYS A 187 1 17 HELIX 12 12 ASN A 201 GLY A 227 1 27 HELIX 13 13 ASP A 232 GLY A 240 1 9 HELIX 14 14 ASP A 250 ASN A 283 1 34 HELIX 15 15 ASN A 283 LEU A 298 1 16 HELIX 16 16 SER A 304 GLN A 310 1 7 HELIX 17 17 LEU A 311 TRP A 325 1 15 HELIX 18 18 GLY A 342 GLU A 344 5 3 HELIX 19 19 ILE A 357 HIS A 361 1 5 HELIX 20 20 ASP A 363 GLY A 368 1 6 HELIX 21 21 ARG A 375 GLU A 380 5 6 HELIX 22 22 ASN A 381 ILE A 385 5 5 HELIX 23 23 ASN A 395 ALA A 399 5 5 HELIX 24 24 GLY A 402 HIS A 420 1 19 HELIX 25 25 PHE B 11 LYS B 15 5 5 HELIX 26 26 ASN B 16 ASN B 21 5 6 HELIX 27 27 LYS B 24 GLY B 37 1 14 HELIX 28 28 SER B 54 CYS B 62 1 9 HELIX 29 29 SER B 72 GLY B 83 1 12 HELIX 30 30 GLY B 85 SER B 89 5 5 HELIX 31 31 GLU B 93 LEU B 104 1 12 HELIX 32 32 PRO B 105 PHE B 107 5 3 HELIX 33 33 SER B 108 ARG B 132 1 25 HELIX 34 34 VAL B 141 ASN B 159 1 19 HELIX 35 35 ASN B 163 ARG B 167 5 5 HELIX 36 36 HIS B 171 LYS B 187 1 17 HELIX 37 37 LEU B 188 ARG B 190 5 3 HELIX 38 38 TYR B 198 GLY B 227 1 30 HELIX 39 39 ASP B 232 GLY B 240 1 9 HELIX 40 40 ASP B 250 LYS B 282 1 33 HELIX 41 41 ASN B 283 LEU B 298 1 16 HELIX 42 42 SER B 304 GLN B 310 1 7 HELIX 43 43 LEU B 311 TRP B 325 1 15 HELIX 44 44 ILE B 357 HIS B 361 1 5 HELIX 45 45 ASP B 363 GLY B 368 1 6 HELIX 46 46 ARG B 375 GLU B 380 5 6 HELIX 47 47 ASN B 381 ILE B 385 5 5 HELIX 48 48 ASN B 395 ALA B 399 5 5 HELIX 49 49 GLY B 402 HIS B 420 1 19 SHEET 1 A 5 ILE A 39 ALA A 44 0 SHEET 2 A 5 ARG A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 A 5 GLU A 352 LEU A 356 1 O MET A 354 N LEU A 52 SHEET 4 A 5 ALA A 330 ALA A 335 -1 N LEU A 333 O LEU A 353 SHEET 5 A 5 PHE A 67 LYS A 69 -1 N ASP A 68 O TYR A 334 SHEET 1 B 3 ILE A 139 GLU A 140 0 SHEET 2 B 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 B 3 PHE A 421 GLU A 424 -1 N ASP A 422 O LYS A 449 SHEET 1 C 2 THR A 339 LEU A 341 0 SHEET 2 C 2 TYR A 345 LEU A 347 -1 O LEU A 347 N THR A 339 SHEET 1 D 2 ILE A 433 GLU A 435 0 SHEET 2 D 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 E 5 ILE B 39 GLU B 43 0 SHEET 2 E 5 VAL B 48 LEU B 52 -1 O THR B 49 N PHE B 42 SHEET 3 E 5 GLU B 352 LEU B 356 1 O MET B 354 N ARG B 50 SHEET 4 E 5 ALA B 330 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 E 5 PHE B 67 LYS B 69 -1 N ASP B 68 O TYR B 334 SHEET 1 F 3 ILE B 139 GLU B 140 0 SHEET 2 F 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 F 3 PHE B 421 GLU B 424 -1 N ASP B 422 O LYS B 449 SHEET 1 G 2 THR B 339 LEU B 341 0 SHEET 2 G 2 TYR B 345 LEU B 347 -1 O TYR B 345 N LEU B 341 SHEET 1 H 2 ILE B 433 GLU B 435 0 SHEET 2 H 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE HEM A 460 1555 1555 2.26 LINK FE HEM A 460 O HOH A 480 1555 1555 2.39 LINK SG CYS B 400 FE HEM B 460 1555 1555 2.28 LINK FE HEM B 460 O HOH B 615 1555 1555 2.55 SITE 1 AC1 23 LYS A 69 LEU A 86 PHE A 87 TRP A 96 SITE 2 AC1 23 ALA A 264 GLY A 265 THR A 268 THR A 269 SITE 3 AC1 23 THR A 327 PHE A 331 PRO A 392 TRP A 393 SITE 4 AC1 23 GLY A 394 ARG A 398 CYS A 400 ILE A 401 SITE 5 AC1 23 HOH A 466 HOH A 467 HOH A 473 HOH A 480 SITE 6 AC1 23 HOH A 487 HOH A 499 HOH A 628 SITE 1 AC2 25 LYS B 69 LEU B 86 PHE B 87 TRP B 96 SITE 2 AC2 25 ALA B 264 GLY B 265 THR B 268 THR B 269 SITE 3 AC2 25 THR B 327 PHE B 331 PRO B 392 TRP B 393 SITE 4 AC2 25 GLY B 394 ARG B 398 ALA B 399 CYS B 400 SITE 5 AC2 25 ILE B 401 GLY B 402 HOH B 474 HOH B 475 SITE 6 AC2 25 HOH B 478 HOH B 480 HOH B 485 HOH B 531 SITE 7 AC2 25 HOH B 615 CRYST1 58.911 153.538 61.430 90.00 94.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016975 0.000000 0.001312 0.00000 SCALE2 0.000000 0.006513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016327 0.00000