PDB Short entry for 1P2H HEADER OXIDOREDUCTASE 15-APR-03 1P2H TITLE H61M MUTANT OF FLAVOCYTOCHROME C3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVOCYTOCHROME C3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FLAVOCYTOCHROME C3 FUMARATE REDUCTASE; COMPND 5 SYNONYM: FLAVOCYTOCHROME C; COMPND 6 EC: 1.3.99.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA FRIGIDIMARINA; SOURCE 3 ORGANISM_TAXID: 56812; SOURCE 4 GENE: FCC; SOURCE 5 EXPRESSION_SYSTEM: SHEWANELLA FRIGIDIMARINA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 56812; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: EG301; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMMB503EH KEYWDS FLAVOCYTOCHROME C3, FUMARATE REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.L.ROTHERY,C.G.MOWAT,C.S.MILES,M.D.WALKINSHAW,G.A.REID,S.K.CHAPMAN REVDAT 4 16-AUG-23 1P2H 1 REMARK REVDAT 3 27-OCT-21 1P2H 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1P2H 1 VERSN REVDAT 1 25-NOV-03 1P2H 0 JRNL AUTH E.L.ROTHERY,C.G.MOWAT,C.S.MILES,M.D.WALKINSHAW,G.A.REID, JRNL AUTH 2 S.K.CHAPMAN JRNL TITL HISTIDINE 61: AN IMPORTANT HEME LIGAND IN THE SOLUBLE JRNL TITL 2 FUMARATE REDUCTASE FROM SHEWANELLA FRIGIDIMARINA JRNL REF BIOCHEMISTRY V. 42 13160 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14609326 JRNL DOI 10.1021/BI030159Z REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 32859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1665 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 235 REMARK 3 SOLVENT ATOMS : 581 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; NULL REMARK 3 ANGLE DISTANCE (A) : 3.700 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32878 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 17.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ID 1QJD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TRISHCL, NACL, SODIUM REMARK 280 FUMARATE , PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.64300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 569 REMARK 465 LYS A 570 REMARK 465 ASN A 571 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 112 CD CE NZ REMARK 470 LYS A 184 CD CE NZ REMARK 470 LYS A 267 CE NZ REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 LYS A 325 CD CE NZ REMARK 470 LYS A 415 CE NZ REMARK 470 LYS A 427 CE NZ REMARK 470 LYS A 452 CD CE NZ REMARK 470 GLU A 463 CG CD OE1 OE2 REMARK 470 LYS A 523 CG CD CE NZ REMARK 470 LYS A 566 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 219 OG1 THR A 555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 2 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 GLN A 12 CA - CB - CG ANGL. DEV. = 22.0 DEGREES REMARK 500 CYS A 14 CA - CB - SG ANGL. DEV. = -11.2 DEGREES REMARK 500 ASP A 15 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 TYR A 31 CB - CG - CD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 TYR A 31 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 SER A 38 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 SER A 60 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 TYR A 94 C - N - CA ANGL. DEV. = 17.0 DEGREES REMARK 500 TYR A 94 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR A 94 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 LYS A 96 N - CA - CB ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 100 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP A 125 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 125 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP A 147 CB - CG - OD1 ANGL. DEV. = 10.0 DEGREES REMARK 500 ALA A 175 N - CA - CB ANGL. DEV. = 16.2 DEGREES REMARK 500 TRP A 176 C - N - CA ANGL. DEV. = 50.1 DEGREES REMARK 500 TRP A 176 N - CA - CB ANGL. DEV. = 16.3 DEGREES REMARK 500 GLN A 180 CG - CD - OE1 ANGL. DEV. = -13.7 DEGREES REMARK 500 ASP A 187 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 187 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 229 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 THR A 231 CA - CB - OG1 ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 243 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 243 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 273 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 277 NE - CZ - NH1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 284 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 284 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 TYR A 298 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 307 CB - CG - OD1 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 381 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 390 NE - CZ - NH1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 390 NE - CZ - NH2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 394 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 394 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 403 CB - CG - OD1 ANGL. DEV. = 13.0 DEGREES REMARK 500 ASP A 403 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 422 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 423 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 426 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 467 CD - NE - CZ ANGL. DEV. = 20.8 DEGREES REMARK 500 ARG A 482 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 487 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 487 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR A 495 CB - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 VAL A 510 CB - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 VAL A 510 N - CA - CB ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 54 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 10 -51.18 -10.36 REMARK 500 ASN A 26 -179.48 -171.69 REMARK 500 LYS A 51 143.52 -32.05 REMARK 500 ASN A 56 106.98 -163.39 REMARK 500 ALA A 57 -39.14 -39.69 REMARK 500 ALA A 59 -73.11 -103.31 REMARK 500 SER A 60 -178.47 -17.50 REMARK 500 THR A 69 1.83 -69.98 REMARK 500 CYS A 71 -30.08 -130.34 REMARK 500 ASN A 91 66.64 -117.29 REMARK 500 TRP A 98 130.83 -36.84 REMARK 500 ASP A 111 42.00 -88.86 REMARK 500 SER A 134 34.08 -99.46 REMARK 500 ALA A 169 -79.08 -121.28 REMARK 500 LYS A 184 32.97 80.47 REMARK 500 GLN A 201 33.44 73.60 REMARK 500 ASN A 202 17.13 57.87 REMARK 500 ARG A 243 17.22 -163.24 REMARK 500 THR A 248 131.38 -33.95 REMARK 500 THR A 367 77.95 -118.67 REMARK 500 PHE A 395 -1.21 -151.68 REMARK 500 ASP A 422 -162.15 -115.83 REMARK 500 ASN A 490 6.81 -153.71 REMARK 500 HIS A 504 -30.26 -134.19 REMARK 500 ASP A 513 -167.55 -119.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 175 TRP A 176 30.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 9 -12.46 REMARK 500 ASP A 125 -13.72 REMARK 500 GLU A 158 -11.83 REMARK 500 MET A 192 -10.09 REMARK 500 VAL A 266 -10.55 REMARK 500 ALA A 417 11.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 8 NE2 REMARK 620 2 HEM A 802 NA 97.3 REMARK 620 3 HEM A 802 NB 96.1 88.8 REMARK 620 4 HEM A 802 NC 103.2 159.3 86.0 REMARK 620 5 HEM A 802 ND 102.7 88.8 161.2 89.7 REMARK 620 6 HIS A 40 NE2 171.0 89.7 78.3 69.6 83.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEM A 801 NA 95.8 REMARK 620 3 HEM A 801 NB 83.7 90.5 REMARK 620 4 HEM A 801 NC 76.4 172.2 88.5 REMARK 620 5 HEM A 801 ND 88.3 89.5 171.9 90.4 REMARK 620 6 HIS A 75 NE2 172.0 82.3 104.0 105.4 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 803 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 NE2 REMARK 620 2 HEM A 803 NA 102.4 REMARK 620 3 HEM A 803 NB 91.7 91.8 REMARK 620 4 HEM A 803 NC 80.7 176.7 86.9 REMARK 620 5 HEM A 803 ND 88.0 91.5 176.7 89.8 REMARK 620 6 HIS A 72 NE2 179.3 77.2 88.8 99.7 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 804 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HEM A 804 NA 101.5 REMARK 620 3 HEM A 804 NB 84.2 89.6 REMARK 620 4 HEM A 804 NC 83.6 174.8 91.5 REMARK 620 5 HEM A 804 ND 94.3 87.4 176.3 91.7 REMARK 620 6 HOH A1351 O 167.4 81.7 83.6 93.4 98.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 810 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 506 O REMARK 620 2 GLY A 508 O 84.2 REMARK 620 3 GLU A 534 O 106.0 100.1 REMARK 620 4 THR A 536 O 159.3 88.5 94.4 REMARK 620 5 HOH A 852 O 90.5 159.7 100.2 89.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TEO A 806 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QJD RELATED DB: PDB REMARK 900 WILD-TYPE OF SAME REMARK 900 RELATED ID: 1JRX RELATED DB: PDB REMARK 900 R402A MUTANT REMARK 900 RELATED ID: 1JRY RELATED DB: PDB REMARK 900 R402K MUTANT REMARK 900 RELATED ID: 1JRZ RELATED DB: PDB REMARK 900 R402Y MUTANT REMARK 900 RELATED ID: 1LJ1 RELATED DB: PDB REMARK 900 Q363F:R402A MUTANT REMARK 900 RELATED ID: 1M64 RELATED DB: PDB REMARK 900 Q363F MUTANT REMARK 900 RELATED ID: 1P2E RELATED DB: PDB REMARK 900 H61A MUTANT DBREF 1P2H A 1 571 UNP Q02469 FRDA_SHEFR 26 596 SEQADV 1P2H MET A 61 UNP Q02469 HIS 86 ENGINEERED MUTATION SEQRES 1 A 571 ALA ASP ASN LEU ALA GLU PHE HIS VAL GLN ASN GLN GLU SEQRES 2 A 571 CYS ASP SER CYS HIS THR PRO ASP GLY GLU LEU SER ASN SEQRES 3 A 571 ASP SER LEU THR TYR GLU ASN THR GLN CYS VAL SER CYS SEQRES 4 A 571 HIS GLY THR LEU ALA GLU VAL ALA GLU THR THR LYS HIS SEQRES 5 A 571 GLU HIS TYR ASN ALA HIS ALA SER MET PHE PRO GLY GLU SEQRES 6 A 571 VAL ALA CYS THR SER CYS HIS SER ALA HIS GLU LYS SER SEQRES 7 A 571 MET VAL TYR CYS ASP SER CYS HIS SER PHE ASP PHE ASN SEQRES 8 A 571 MET PRO TYR ALA LYS LYS TRP LEU ARG ASP GLU PRO THR SEQRES 9 A 571 ILE ALA GLU LEU ALA LYS ASP LYS SER GLU ARG GLN ALA SEQRES 10 A 571 ALA LEU ALA SER ALA PRO HIS ASP THR VAL ASP VAL VAL SEQRES 11 A 571 VAL VAL GLY SER GLY GLY ALA GLY PHE SER ALA ALA ILE SEQRES 12 A 571 SER ALA THR ASP SER GLY ALA LYS VAL ILE LEU ILE GLU SEQRES 13 A 571 LYS GLU PRO VAL ILE GLY GLY ASN ALA LYS LEU ALA ALA SEQRES 14 A 571 GLY GLY MET ASN ALA ALA TRP THR ASP GLN GLN LYS ALA SEQRES 15 A 571 LYS LYS ILE THR ASP SER PRO GLU LEU MET PHE GLU ASP SEQRES 16 A 571 THR MET LYS GLY GLY GLN ASN ILE ASN ASP PRO ALA LEU SEQRES 17 A 571 VAL LYS VAL LEU SER SER HIS SER LYS ASP SER VAL ASP SEQRES 18 A 571 TRP MET THR ALA MET GLY ALA ASP LEU THR ASP VAL GLY SEQRES 19 A 571 MET MET GLY GLY ALA SER VAL ASN ARG ALA HIS ARG PRO SEQRES 20 A 571 THR GLY GLY ALA GLY VAL GLY ALA HIS VAL VAL GLN VAL SEQRES 21 A 571 LEU TYR ASP ASN ALA VAL LYS ARG ASN ILE ASP LEU ARG SEQRES 22 A 571 MET ASN THR ARG GLY ILE GLU VAL LEU LYS ASP ASP LYS SEQRES 23 A 571 GLY THR VAL LYS GLY ILE LEU VAL LYS GLY MET TYR LYS SEQRES 24 A 571 GLY TYR TYR TRP VAL LYS ALA ASP ALA VAL ILE LEU ALA SEQRES 25 A 571 THR GLY GLY PHE ALA LYS ASN ASN GLU ARG VAL ALA LYS SEQRES 26 A 571 LEU ASP PRO SER LEU LYS GLY PHE ILE SER THR ASN GLN SEQRES 27 A 571 PRO GLY ALA VAL GLY ASP GLY LEU ASP VAL ALA GLU ASN SEQRES 28 A 571 ALA GLY GLY ALA LEU LYS ASP MET GLN TYR ILE GLN ALA SEQRES 29 A 571 HIS PRO THR LEU SER VAL LYS GLY GLY VAL MET VAL THR SEQRES 30 A 571 GLU ALA VAL ARG GLY ASN GLY ALA ILE LEU VAL ASN ARG SEQRES 31 A 571 GLU GLY LYS ARG PHE VAL ASN GLU ILE THR THR ARG ASP SEQRES 32 A 571 LYS ALA SER ALA ALA ILE LEU ALA GLN THR GLY LYS SER SEQRES 33 A 571 ALA TYR LEU ILE PHE ASP ASP SER VAL ARG LYS SER LEU SEQRES 34 A 571 SER LYS ILE ASP LYS TYR ILE GLY LEU GLY VAL ALA PRO SEQRES 35 A 571 THR ALA ASP SER LEU VAL LYS LEU GLY LYS MET GLU GLY SEQRES 36 A 571 ILE ASP GLY LYS ALA LEU THR GLU THR VAL ALA ARG TYR SEQRES 37 A 571 ASN SER LEU VAL SER SER GLY LYS ASP THR ASP PHE GLU SEQRES 38 A 571 ARG PRO ASN LEU PRO ARG ALA LEU ASN GLU GLY ASN TYR SEQRES 39 A 571 TYR ALA ILE GLU VAL THR PRO GLY VAL HIS HIS THR MET SEQRES 40 A 571 GLY GLY VAL MET ILE ASP THR LYS ALA GLU VAL MET ASN SEQRES 41 A 571 ALA LYS LYS GLN VAL ILE PRO GLY LEU TYR GLY ALA GLY SEQRES 42 A 571 GLU VAL THR GLY GLY VAL HIS GLY ALA ASN ARG LEU GLY SEQRES 43 A 571 GLY ASN ALA ILE SER ASP ILE ILE THR PHE GLY ARG LEU SEQRES 44 A 571 ALA GLY GLU GLU ALA ALA LYS TYR SER LYS LYS ASN HET NA A 810 1 HET HEM A 801 43 HET HEM A 802 43 HET HEM A 803 43 HET HEM A 804 43 HET FAD A 805 53 HET TEO A 806 9 HETNAM NA SODIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM TEO MALATE LIKE INTERMEDIATE HETSYN HEM HEME FORMUL 2 NA NA 1+ FORMUL 3 HEM 4(C34 H32 FE N4 O4) FORMUL 7 FAD C27 H33 N9 O15 P2 FORMUL 8 TEO C4 H4 O5 2- FORMUL 9 HOH *581(H2 O) HELIX 1 1 ASN A 3 GLN A 10 1 8 HELIX 2 2 ASN A 11 GLN A 12 5 2 HELIX 3 3 GLU A 13 CYS A 17 5 5 HELIX 4 4 LEU A 29 GLY A 41 1 13 HELIX 5 5 THR A 42 THR A 49 1 8 HELIX 6 6 ALA A 67 CYS A 71 5 5 HELIX 7 7 VAL A 80 CYS A 85 5 6 HELIX 8 8 ILE A 105 LYS A 110 5 6 HELIX 9 9 ASP A 111 SER A 121 1 11 HELIX 10 10 GLY A 135 SER A 148 1 14 HELIX 11 11 ASN A 164 ALA A 168 5 5 HELIX 12 12 THR A 177 LYS A 184 1 8 HELIX 13 13 SER A 188 GLY A 200 1 13 HELIX 14 14 ASP A 205 GLY A 227 1 23 HELIX 15 15 GLY A 252 ARG A 268 1 17 HELIX 16 16 ASN A 319 ASP A 327 1 9 HELIX 17 17 PRO A 328 LYS A 331 5 4 HELIX 18 18 GLY A 343 ALA A 352 1 10 HELIX 19 19 GLU A 378 ASN A 383 1 6 HELIX 20 20 THR A 401 ALA A 411 1 11 HELIX 21 21 GLN A 412 SER A 416 5 5 HELIX 22 22 ASP A 423 SER A 428 1 6 HELIX 23 23 SER A 430 LEU A 438 1 9 HELIX 24 24 SER A 446 GLY A 455 1 10 HELIX 25 25 ASP A 457 SER A 474 1 18 HELIX 26 26 GLY A 547 SER A 568 1 22 SHEET 1 1 3 GLY A 300 LYS A 305 0 SHEET 2 1 3 VAL A 289 GLY A 296 -1 N ILE A 292 O VAL A 304 SHEET 3 1 3 THR A 276 LYS A 283 -1 N ARG A 277 O LYS A 295 SHEET 1 7 5 VAL A 152 ILE A 155 0 SHEET 2 7 5 VAL A 129 VAL A 132 1 O VAL A 129 N ILE A 153 SHEET 3 7 5 ALA A 308 LEU A 311 1 O ALA A 308 N VAL A 130 SHEET 4 7 5 VAL A 525 GLY A 531 1 O GLY A 528 N VAL A 309 SHEET 5 7 5 GLU A 517 MET A 519 -1 O VAL A 518 N ILE A 526 SHEET 1 4 2 ALA A 244 ARG A 246 0 SHEET 2 4 2 ASP A 232 GLY A 234 -1 N ASP A 232 O ARG A 246 SHEET 1 12 2 GLY A 509 MET A 511 0 SHEET 2 12 2 THR A 536 GLY A 537 1 N GLY A 537 O VAL A 510 SHEET 1 14 5 ALA A 417 ASP A 422 0 SHEET 2 14 5 TYR A 494 THR A 506 -1 O TYR A 495 N PHE A 421 SHEET 3 14 5 ILE A 362 SER A 369 -1 O GLN A 363 N HIS A 504 SHEET 4 14 5 TYR A 494 THR A 506 -1 O THR A 500 N LEU A 368 SHEET 5 14 5 THR A 443 ALA A 444 -1 O ALA A 444 N TYR A 494 LINK NE2 HIS A 8 FE HEM A 802 1555 1555 2.03 LINK NE2 HIS A 18 FE HEM A 801 1555 1555 2.02 LINK NE2 HIS A 40 FE HEM A 802 1555 1555 2.16 LINK NE2 HIS A 58 FE HEM A 803 1555 1555 2.19 LINK NE2 HIS A 72 FE HEM A 803 1555 1555 2.18 LINK NE2 HIS A 75 FE HEM A 801 1555 1555 2.04 LINK NE2 HIS A 86 FE HEM A 804 1555 1555 1.85 LINK O THR A 506 NA NA A 810 1555 1555 2.48 LINK O GLY A 508 NA NA A 810 1555 1555 2.56 LINK O GLU A 534 NA NA A 810 1555 1555 2.51 LINK O THR A 536 NA NA A 810 1555 1555 2.49 LINK FE HEM A 804 O HOH A1351 1555 1555 2.10 LINK NA NA A 810 O HOH A 852 1555 1555 2.72 SITE 1 AC1 6 THR A 506 MET A 507 GLY A 508 GLU A 534 SITE 2 AC1 6 THR A 536 HOH A 852 SITE 1 AC2 17 ALA A 5 HIS A 8 VAL A 9 CYS A 14 SITE 2 AC2 17 CYS A 17 HIS A 18 LEU A 24 SER A 73 SITE 3 AC2 17 ALA A 74 HIS A 75 TYR A 298 HOH A 906 SITE 4 AC2 17 HOH A 994 HOH A1121 HOH A1124 HOH A1185 SITE 5 AC2 17 HOH A1348 SITE 1 AC3 10 LEU A 4 HIS A 8 GLN A 12 SER A 16 SITE 2 AC3 10 CYS A 36 CYS A 39 HIS A 40 HIS A 72 SITE 3 AC3 10 TYR A 94 HEM A 803 SITE 1 AC4 22 HIS A 40 GLY A 41 LEU A 43 VAL A 46 SITE 2 AC4 22 THR A 49 THR A 50 HIS A 52 HIS A 58 SITE 3 AC4 22 VAL A 66 CYS A 68 CYS A 71 HIS A 72 SITE 4 AC4 22 VAL A 80 CYS A 82 PHE A 90 ASN A 91 SITE 5 AC4 22 MET A 92 HEM A 802 HEM A 804 HOH A 899 SITE 6 AC4 22 HOH A 905 HOH A1259 SITE 1 AC5 21 HIS A 54 ASN A 56 ALA A 57 SER A 60 SITE 2 AC5 21 PHE A 62 CYS A 82 SER A 84 CYS A 85 SITE 3 AC5 21 HIS A 86 PHE A 88 LEU A 167 GLN A 338 SITE 4 AC5 21 VAL A 374 LYS A 431 LYS A 434 LEU A 438 SITE 5 AC5 21 HEM A 803 HOH A 831 HOH A 929 HOH A 958 SITE 6 AC5 21 HOH A1351 SITE 1 AC6 45 VAL A 132 GLY A 133 GLY A 135 GLY A 136 SITE 2 AC6 45 ALA A 137 GLU A 156 LYS A 157 GLU A 158 SITE 3 AC6 45 GLY A 162 GLY A 163 ASN A 164 ALA A 165 SITE 4 AC6 45 LEU A 167 ALA A 168 ALA A 169 GLY A 170 SITE 5 AC6 45 GLY A 171 THR A 276 ARG A 277 GLY A 278 SITE 6 AC6 45 ALA A 312 THR A 313 GLY A 314 THR A 336 SITE 7 AC6 45 ASN A 337 GLN A 338 ASP A 344 MET A 375 SITE 8 AC6 45 HIS A 504 HIS A 505 GLY A 533 GLU A 534 SITE 9 AC6 45 ARG A 544 GLY A 547 ASN A 548 ALA A 549 SITE 10 AC6 45 ILE A 550 ILE A 553 TEO A 806 HOH A 815 SITE 11 AC6 45 HOH A 820 HOH A 823 HOH A 844 HOH A 854 SITE 12 AC6 45 HOH A 862 SITE 1 AC7 13 ALA A 169 GLY A 170 MET A 236 HIS A 365 SITE 2 AC7 13 MET A 375 THR A 377 GLU A 378 ARG A 402 SITE 3 AC7 13 HIS A 504 ARG A 544 GLY A 546 GLY A 547 SITE 4 AC7 13 FAD A 805 CRYST1 44.693 87.286 76.993 90.00 104.35 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022375 0.000000 0.005724 0.00000 SCALE2 0.000000 0.011457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013406 0.00000