PDB Short entry for 1P8P HEADER HYDROLASE 07-MAY-03 1P8P TITLE STRUCTURAL AND FUNCTIONAL IMPORTANCE OF FIRST-SHELL METAL LIGANDS IN TITLE 2 THE BINUCLEAR MANGANESE CLUSTER OF ARGINASE I. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: ARGINASE I; COMPND 5 SYNONYM: LIVER-TYPE ARGINASE; COMPND 6 EC: 3.5.3.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ARG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29 KEYWDS HYDROLASE, UREA CYCLE, ARGININE METABOLISM, BINUCLEAR MANGANESE KEYWDS 2 CLUSTER EXPDTA X-RAY DIFFRACTION AUTHOR E.CAMA,F.A.EMIG,D.E.ASH,D.W.CHRISTIANSON REVDAT 6 16-AUG-23 1P8P 1 REMARK REVDAT 5 27-OCT-21 1P8P 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1P8P 1 REMARK REVDAT 3 24-FEB-09 1P8P 1 VERSN REVDAT 2 15-JUL-03 1P8P 1 JRNL MASTER REVDAT 1 17-JUN-03 1P8P 0 JRNL AUTH E.CAMA,F.A.EMIG,D.E.ASH,D.W.CHRISTIANSON JRNL TITL STRUCTURAL AND FUNCTIONAL IMPORTANCE OF FIRST-SHELL METAL JRNL TITL 2 LIGANDS IN THE BINUCLEAR MANGANESE CLUSTER OF ARGINASE I JRNL REF BIOCHEMISTRY V. 42 7748 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12820884 JRNL DOI 10.1021/BI030074Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.R.SCOLNICK,Z.F.KANYO,C.R.CAVALLI,D.E.ASH,D.W.CHRISTIANSON REMARK 1 TITL ALTERING THE BINUCLEAR MANGANESE CLUSTER OF ARGINASE REMARK 1 TITL 2 DIMINISHES THERMOSTABILITY AND CATALYTIC FUNCTION REMARK 1 REF BIOCHEMISTRY V. 36 10558 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI970800V REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 74.8 REMARK 3 NUMBER OF REFLECTIONS : 26350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1273 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4322 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 236 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7182 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.44000 REMARK 3 B22 (A**2) : -1.44000 REMARK 3 B33 (A**2) : 2.87000 REMARK 3 B12 (A**2) : 3.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.150 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.150 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.490 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.200 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 54.85 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CISPEP2.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CISPEP.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-95 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : YALE REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26530 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3RLA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, BICINE, MANGANESE CHLORIDE, REMARK 280 PH 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.93333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 101 CA CB CG OD1 ND2 REMARK 480 ASN B 101 CA CB CG OD1 ND2 REMARK 480 ASN C 101 CA CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 314 C - N - CD ANGL. DEV. = -14.7 DEGREES REMARK 500 PRO B 314 C - N - CD ANGL. DEV. = -12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 13.92 -143.62 REMARK 500 GLN A 65 -108.63 71.29 REMARK 500 ASN A 90 13.62 -68.95 REMARK 500 PRO A 157 171.77 -51.96 REMARK 500 ARG A 180 -0.62 -162.74 REMARK 500 ARG A 222 -84.64 -84.99 REMARK 500 GLU A 315 2.82 82.64 REMARK 500 SER B 16 14.22 -143.41 REMARK 500 GLN B 65 -108.80 68.34 REMARK 500 PRO B 157 171.98 -49.34 REMARK 500 ARG B 180 1.71 -156.86 REMARK 500 ARG B 222 -85.56 -84.65 REMARK 500 GLU B 315 1.41 82.90 REMARK 500 SER C 16 14.34 -142.08 REMARK 500 GLN C 65 -94.63 69.71 REMARK 500 MET C 103 1.57 -66.17 REMARK 500 PRO C 157 172.79 -50.71 REMARK 500 ARG C 180 -1.58 -162.98 REMARK 500 ARG C 222 -85.43 -84.11 REMARK 500 GLU C 315 1.14 82.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 98 GLY A 99 90.19 REMARK 500 GLY B 98 GLY B 99 90.18 REMARK 500 GLY C 98 GLY C 99 90.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 101 OD1 REMARK 620 2 ASP A 124 OD2 116.1 REMARK 620 3 ASP A 128 OD2 109.0 92.3 REMARK 620 4 ASP A 232 OD2 96.8 71.9 153.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 HIS A 126 ND1 95.1 REMARK 620 3 ASP A 232 OD2 84.0 171.9 REMARK 620 4 ASP A 234 OD1 70.7 95.2 76.9 REMARK 620 5 ASP A 234 OD2 120.5 97.0 76.8 50.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 101 OD1 REMARK 620 2 ASP B 124 OD2 95.2 REMARK 620 3 ASP B 128 OD2 90.1 67.3 REMARK 620 4 ASP B 232 OD2 103.0 72.7 138.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 HIS B 126 ND1 92.6 REMARK 620 3 ASP B 232 OD2 83.7 175.5 REMARK 620 4 ASP B 234 OD1 70.5 97.2 84.1 REMARK 620 5 ASP B 234 OD2 124.1 102.1 82.2 54.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 101 OD1 REMARK 620 2 ASP C 124 OD2 104.9 REMARK 620 3 ASP C 128 OD2 108.8 89.7 REMARK 620 4 ASP C 232 OD2 91.2 72.8 156.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 OD1 REMARK 620 2 HIS C 126 ND1 98.8 REMARK 620 3 ASP C 232 OD2 85.8 175.2 REMARK 620 4 ASP C 234 OD1 75.8 99.3 83.0 REMARK 620 5 ASP C 234 OD2 127.7 101.0 76.9 53.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RLA RELATED DB: PDB REMARK 900 STRUCTURE OF ARGINASE I VARIANT H101N DBREF 1P8P A 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1P8P B 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1P8P C 6 319 UNP P07824 ARGI1_RAT 6 319 SEQADV 1P8P ASN A 101 UNP P07824 HIS 101 ENGINEERED MUTATION SEQADV 1P8P ASN B 101 UNP P07824 HIS 101 ENGINEERED MUTATION SEQADV 1P8P ASN C 101 UNP P07824 HIS 101 ENGINEERED MUTATION SEQRES 1 A 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 A 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 A 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 A 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 A 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 A 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 A 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 A 314 LEU GLY GLY ASP ASN SER MET ALA ILE GLY SER ILE SER SEQRES 9 A 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 A 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 A 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 A 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 A 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 A 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 A 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 A 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 A 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 A 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 A 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 A 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 A 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 A 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 A 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 A 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 A 314 TYR LEU SEQRES 1 B 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 B 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 B 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 B 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 B 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 B 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 B 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 B 314 LEU GLY GLY ASP ASN SER MET ALA ILE GLY SER ILE SER SEQRES 9 B 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 B 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 B 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 B 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 B 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 B 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 B 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 B 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 B 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 B 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 B 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 B 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 B 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 B 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 B 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 B 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 B 314 TYR LEU SEQRES 1 C 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 C 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 C 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 C 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 C 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 C 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 C 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 C 314 LEU GLY GLY ASP ASN SER MET ALA ILE GLY SER ILE SER SEQRES 9 C 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 C 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 C 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 C 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 C 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 C 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 C 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 C 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 C 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 C 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 C 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 C 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 C 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 C 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 C 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 C 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 C 314 TYR LEU HET MN A 500 1 HET MN A 501 1 HET MN B 502 1 HET MN B 503 1 HET MN C 504 1 HET MN C 505 1 HETNAM MN MANGANESE (II) ION FORMUL 4 MN 6(MN 2+) FORMUL 10 HOH *78(H2 O) HELIX 1 1 GLY A 23 GLU A 25 5 3 HELIX 2 2 LYS A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 GLU A 42 1 8 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 MET A 103 ARG A 113 1 11 HELIX 7 7 ASN A 139 PHE A 147 5 9 HELIX 8 8 SER A 170 LYS A 172 5 3 HELIX 9 9 ASP A 183 LEU A 193 1 11 HELIX 10 10 MET A 200 GLY A 207 1 8 HELIX 11 11 GLY A 207 GLY A 221 1 15 HELIX 12 12 ASP A 234 LEU A 236 5 3 HELIX 13 13 SER A 253 LYS A 266 1 14 HELIX 14 14 ASN A 279 GLY A 283 5 5 HELIX 15 15 THR A 285 PHE A 304 1 20 HELIX 16 16 GLY B 23 GLU B 25 5 3 HELIX 17 17 LYS B 26 ALA B 34 1 9 HELIX 18 18 GLY B 35 GLU B 42 1 8 HELIX 19 19 ASN B 69 ASN B 90 1 22 HELIX 20 20 ASP B 100 SER B 102 5 3 HELIX 21 21 MET B 103 ARG B 113 1 11 HELIX 22 22 ASN B 139 PHE B 147 5 9 HELIX 23 23 SER B 170 LYS B 172 5 3 HELIX 24 24 ASP B 183 LEU B 193 1 11 HELIX 25 25 MET B 200 GLY B 207 1 8 HELIX 26 26 GLY B 207 GLY B 221 1 15 HELIX 27 27 ASP B 234 LEU B 236 5 3 HELIX 28 28 SER B 253 LYS B 266 1 14 HELIX 29 29 ASN B 279 GLY B 283 5 5 HELIX 30 30 THR B 285 PHE B 304 1 20 HELIX 31 31 GLY C 23 GLU C 25 5 3 HELIX 32 32 LYS C 26 ALA C 34 1 9 HELIX 33 33 GLY C 35 GLU C 42 1 8 HELIX 34 34 ASN C 69 ASN C 90 1 22 HELIX 35 35 ASP C 100 SER C 102 5 3 HELIX 36 36 MET C 103 ARG C 113 1 11 HELIX 37 37 ASN C 139 PHE C 147 5 9 HELIX 38 38 SER C 170 LYS C 172 5 3 HELIX 39 39 ASP C 183 LEU C 193 1 11 HELIX 40 40 MET C 200 GLY C 221 1 22 HELIX 41 41 ASP C 234 LEU C 236 5 3 HELIX 42 42 SER C 253 LYS C 266 1 14 HELIX 43 43 ASN C 279 GLY C 283 5 5 HELIX 44 44 THR C 285 PHE C 304 1 20 SHEET 1 A 8 ASN A 46 ASP A 52 0 SHEET 2 A 8 PRO A 7 ALA A 13 1 N ILE A 8 O ASN A 46 SHEET 3 A 8 ILE A 93 GLY A 98 1 O VAL A 95 N ILE A 11 SHEET 4 A 8 LEU A 270 MET A 276 1 O LEU A 273 N VAL A 96 SHEET 5 A 8 ILE A 227 ASP A 232 1 N PHE A 231 O ASP A 274 SHEET 6 A 8 CYS A 119 VAL A 123 1 N VAL A 123 O ASP A 232 SHEET 7 A 8 ILE A 174 LEU A 179 1 O ILE A 177 N TRP A 122 SHEET 8 A 8 LYS A 196 SER A 199 1 O PHE A 198 N TYR A 176 SHEET 1 B 8 ASN B 46 ASP B 52 0 SHEET 2 B 8 PRO B 7 ALA B 13 1 N ILE B 8 O ASN B 46 SHEET 3 B 8 ILE B 93 GLY B 98 1 O VAL B 95 N ILE B 11 SHEET 4 B 8 LEU B 270 MET B 276 1 O LEU B 273 N VAL B 96 SHEET 5 B 8 ILE B 227 ASP B 232 1 N PHE B 231 O ASP B 274 SHEET 6 B 8 CYS B 119 VAL B 123 1 N VAL B 123 O ASP B 232 SHEET 7 B 8 ILE B 174 LEU B 179 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 SER B 199 1 O PHE B 198 N TYR B 176 SHEET 1 C 8 ASN C 46 ASP C 52 0 SHEET 2 C 8 PRO C 7 ALA C 13 1 N ILE C 8 O ASN C 46 SHEET 3 C 8 ILE C 93 GLY C 98 1 O VAL C 95 N ILE C 11 SHEET 4 C 8 LEU C 270 MET C 276 1 O LEU C 273 N VAL C 96 SHEET 5 C 8 ILE C 227 ASP C 232 1 N PHE C 231 O ASP C 274 SHEET 6 C 8 CYS C 119 VAL C 123 1 N VAL C 123 O ASP C 232 SHEET 7 C 8 ILE C 174 LEU C 179 1 O VAL C 175 N TRP C 122 SHEET 8 C 8 LYS C 196 SER C 199 1 O PHE C 198 N TYR C 176 LINK OD1 ASN A 101 MN MN A 500 1555 1555 2.02 LINK OD2 ASP A 124 MN MN A 500 1555 1555 1.93 LINK OD1 ASP A 124 MN MN A 501 1555 1555 2.16 LINK ND1 HIS A 126 MN MN A 501 1555 1555 2.18 LINK OD2 ASP A 128 MN MN A 500 1555 1555 2.13 LINK OD2 ASP A 232 MN MN A 500 1555 1555 2.53 LINK OD2 ASP A 232 MN MN A 501 1555 1555 2.20 LINK OD1 ASP A 234 MN MN A 501 1555 1555 2.70 LINK OD2 ASP A 234 MN MN A 501 1555 1555 2.46 LINK OD1 ASN B 101 MN MN B 502 1555 1555 2.11 LINK OD2 ASP B 124 MN MN B 502 1555 1555 2.48 LINK OD1 ASP B 124 MN MN B 503 1555 1555 2.22 LINK ND1 HIS B 126 MN MN B 503 1555 1555 2.26 LINK OD2 ASP B 128 MN MN B 502 1555 1555 2.61 LINK OD2 ASP B 232 MN MN B 502 1555 1555 2.18 LINK OD2 ASP B 232 MN MN B 503 1555 1555 2.20 LINK OD1 ASP B 234 MN MN B 503 1555 1555 2.54 LINK OD2 ASP B 234 MN MN B 503 1555 1555 2.28 LINK OD1 ASN C 101 MN MN C 504 1555 1555 2.15 LINK OD2 ASP C 124 MN MN C 504 1555 1555 2.08 LINK OD1 ASP C 124 MN MN C 505 1555 1555 2.03 LINK ND1 HIS C 126 MN MN C 505 1555 1555 2.17 LINK OD2 ASP C 128 MN MN C 504 1555 1555 2.06 LINK OD2 ASP C 232 MN MN C 504 1555 1555 2.61 LINK OD2 ASP C 232 MN MN C 505 1555 1555 2.23 LINK OD1 ASP C 234 MN MN C 505 1555 1555 2.52 LINK OD2 ASP C 234 MN MN C 505 1555 1555 2.37 SITE 1 AC1 4 ASP A 124 ASP A 128 ASP A 232 MN A 501 SITE 1 AC2 5 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC2 5 MN A 500 SITE 1 AC3 4 ASP B 124 ASP B 128 ASP B 232 MN B 503 SITE 1 AC4 5 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC4 5 MN B 502 SITE 1 AC5 4 ASP C 124 ASP C 128 ASP C 232 MN C 505 SITE 1 AC6 5 ASP C 124 HIS C 126 ASP C 232 ASP C 234 SITE 2 AC6 5 MN C 504 CRYST1 89.000 89.000 115.400 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011236 0.006487 0.000000 0.00000 SCALE2 0.000000 0.012974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008666 0.00000