PDB Short entry for 1P9W HEADER PROTEIN TRANSPORT 12-MAY-03 1P9W TITLE CRYSTAL STRUCTURE OF VIBRIO CHOLERAE PUTATIVE NTPASE EPSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL SECRETION PATHWAY PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL TRUNCATION OF RESIDUES 1-90; COMPND 5 SYNONYM: TYPE II TRAFFIC WARDEN ATPASE, CHOLERA TOXIN COMPND 6 SECRETION PROTEIN EPSE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: EPSE OR VC2732; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE70 KEYWDS BACTERIAL TYPE II SECRETION SYSTEM CYTOPLASMIC PROTEIN - KEYWDS 2 GSPE, PUTATIVE ATPASE, ATP BINDING PROTEIN, METALLOPROTEIN KEYWDS 3 (METAL-CYS4 SITE), PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ROBIEN,B.E.KRUMM,M.SANDKVIST,W.G.J.HOL REVDAT 2 24-FEB-09 1P9W 1 VERSN REVDAT 1 14-OCT-03 1P9W 0 JRNL AUTH M.A.ROBIEN,B.E.KRUMM,M.SANDKVIST,W.G.J.HOL JRNL TITL CRYSTAL STRUCTURE OF THE EXTRACELLULAR PROTEIN JRNL TITL 2 SECRETION NTPASE EPSE OF VIBRIO CHOLERAE JRNL REF J.MOL.BIOL. V. 333 657 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 14556751 JRNL DOI 10.1016/J.JMB.2003.07.015 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 13973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 918 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.4270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.59000 REMARK 3 B22 (A**2) : 1.59000 REMARK 3 B33 (A**2) : -2.38000 REMARK 3 B12 (A**2) : 0.79000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.854 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.174 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3050 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4117 ; 1.348 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 6.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2215 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1243 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1903 ; 1.091 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3075 ; 2.208 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1147 ; 2.819 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1042 ; 4.520 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P9W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL: SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, ELVES REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15414 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE V. 2.02 REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 200, 3- REMARK 280 MORPHOLINOPROPANESULFONATE, AMP-PNP, PH 7.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.63933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.27867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.45900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 139.09833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.81967 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.63933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 111.27867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 139.09833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.45900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.81967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 91 REMARK 465 GLU A 92 REMARK 465 ASP A 93 REMARK 465 ILE A 94 REMARK 465 GLY A 95 REMARK 465 ALA A 96 REMARK 465 ASP A 97 REMARK 465 PRO A 109 REMARK 465 GLN A 110 REMARK 465 ASN A 111 REMARK 465 GLU A 112 REMARK 465 ASP A 113 REMARK 465 LEU A 114 REMARK 465 LEU A 115 REMARK 465 GLU A 116 REMARK 465 SER A 117 REMARK 465 GLU A 118 REMARK 465 ASP A 119 REMARK 465 ASP A 120 REMARK 465 GLY A 204 REMARK 465 ARG A 205 REMARK 465 ASP A 415 REMARK 465 SER A 416 REMARK 465 LYS A 417 REMARK 465 LYS A 418 REMARK 465 LYS A 419 REMARK 465 ARG A 501 REMARK 465 SER A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 298 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 328 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 CYS A 433 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 99 89.76 86.48 REMARK 500 LYS A 184 57.81 74.59 REMARK 500 LEU A 226 83.45 44.17 REMARK 500 ASP A 293 83.13 -153.28 REMARK 500 ASP A 300 105.08 98.71 REMARK 500 VAL A 311 20.79 -140.59 REMARK 500 HIS A 359 40.19 -100.41 REMARK 500 THR A 428 -106.13 62.78 REMARK 500 CYS A 433 -151.59 -88.42 REMARK 500 ASN A 434 -92.61 -159.46 REMARK 500 HIS A 435 99.26 -55.43 REMARK 500 LYS A 436 168.58 72.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 397 SG REMARK 620 2 CYS A 400 SG 110.3 REMARK 620 3 CYS A 430 SG 116.0 105.4 REMARK 620 4 CYS A 433 SG 111.8 88.3 120.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P9R RELATED DB: PDB REMARK 900 1P9R IS THE SAME PROTEIN WITHOUT BOUND NUCLEOTIDE ANALOG DBREF 1P9W A 91 498 UNP P37093 GSPE_VIBCH 91 498 SEQADV 1P9W MSE A 91 UNP P37093 MET 91 MODIFIED RESIDUE SEQADV 1P9W MSE A 130 UNP P37093 MET 130 MODIFIED RESIDUE SEQADV 1P9W MSE A 182 UNP P37093 MET 182 MODIFIED RESIDUE SEQADV 1P9W MSE A 214 UNP P37093 MET 214 MODIFIED RESIDUE SEQADV 1P9W MSE A 224 UNP P37093 MET 224 MODIFIED RESIDUE SEQADV 1P9W MSE A 241 UNP P37093 MET 241 MODIFIED RESIDUE SEQADV 1P9W MSE A 313 UNP P37093 MET 313 MODIFIED RESIDUE SEQADV 1P9W MSE A 331 UNP P37093 MET 331 MODIFIED RESIDUE SEQADV 1P9W MSE A 355 UNP P37093 MET 355 MODIFIED RESIDUE SEQADV 1P9W MSE A 373 UNP P37093 MET 373 MODIFIED RESIDUE SEQADV 1P9W MSE A 467 UNP P37093 MET 467 MODIFIED RESIDUE SEQADV 1P9W MSE A 497 UNP P37093 MET 497 MODIFIED RESIDUE SEQADV 1P9W GLY A 499 UNP P37093 EXPRESSION TAG SEQADV 1P9W SER A 500 UNP P37093 EXPRESSION TAG SEQADV 1P9W ARG A 501 UNP P37093 EXPRESSION TAG SEQADV 1P9W SER A 502 UNP P37093 EXPRESSION TAG SEQADV 1P9W HIS A 503 UNP P37093 EXPRESSION TAG SEQADV 1P9W HIS A 504 UNP P37093 EXPRESSION TAG SEQADV 1P9W HIS A 505 UNP P37093 EXPRESSION TAG SEQADV 1P9W HIS A 506 UNP P37093 EXPRESSION TAG SEQADV 1P9W HIS A 507 UNP P37093 EXPRESSION TAG SEQADV 1P9W HIS A 508 UNP P37093 EXPRESSION TAG SEQRES 1 A 418 MSE GLU ASP ILE GLY ALA ASP SER ASP ASP PHE PHE SER SEQRES 2 A 418 LEU ALA GLU GLU LEU PRO GLN ASN GLU ASP LEU LEU GLU SEQRES 3 A 418 SER GLU ASP ASP ALA PRO ILE ILE LYS LEU ILE ASN ALA SEQRES 4 A 418 MSE LEU GLY GLU ALA ILE LYS GLU GLY ALA SER ASP ILE SEQRES 5 A 418 HIS ILE GLU THR PHE GLU LYS THR LEU SER ILE ARG PHE SEQRES 6 A 418 ARG VAL ASP GLY VAL LEU ARG GLU VAL LEU ALA PRO SER SEQRES 7 A 418 ARG LYS LEU SER SER LEU LEU VAL SER ARG VAL LYS VAL SEQRES 8 A 418 MSE ALA LYS LEU ASP ILE ALA GLU LYS ARG VAL PRO GLN SEQRES 9 A 418 ASP GLY ARG ILE SER LEU ARG ILE GLY GLY ARG ALA VAL SEQRES 10 A 418 ASP VAL ARG VAL SER THR MSE PRO SER SER HIS GLY GLU SEQRES 11 A 418 ARG VAL VAL MSE ARG LEU LEU ASP LYS ASN ALA THR ARG SEQRES 12 A 418 LEU ASP LEU HIS SER LEU GLY MSE THR ALA HIS ASN HIS SEQRES 13 A 418 ASP ASN PHE ARG ARG LEU ILE LYS ARG PRO HIS GLY ILE SEQRES 14 A 418 ILE LEU VAL THR GLY PRO THR GLY SER GLY LYS SER THR SEQRES 15 A 418 THR LEU TYR ALA GLY LEU GLN GLU LEU ASN SER SER GLU SEQRES 16 A 418 ARG ASN ILE LEU THR VAL GLU ASP PRO ILE GLU PHE ASP SEQRES 17 A 418 ILE ASP GLY ILE GLY GLN THR GLN VAL ASN PRO ARG VAL SEQRES 18 A 418 ASP MSE THR PHE ALA ARG GLY LEU ARG ALA ILE LEU ARG SEQRES 19 A 418 GLN ASP PRO ASP VAL VAL MSE VAL GLY GLU ILE ARG ASP SEQRES 20 A 418 LEU GLU THR ALA GLN ILE ALA VAL GLN ALA SER LEU THR SEQRES 21 A 418 GLY HIS LEU VAL MSE SER THR LEU HIS THR ASN THR ALA SEQRES 22 A 418 VAL GLY ALA VAL THR ARG LEU ARG ASP MSE GLY ILE GLU SEQRES 23 A 418 PRO PHE LEU ILE SER SER SER LEU LEU GLY VAL LEU ALA SEQRES 24 A 418 GLN ARG LEU VAL ARG THR LEU CYS PRO ASP CYS LYS GLU SEQRES 25 A 418 PRO TYR GLU ALA ASP LYS GLU GLN ARG LYS LEU PHE ASP SEQRES 26 A 418 SER LYS LYS LYS GLU PRO LEU ILE LEU TYR ARG ALA THR SEQRES 27 A 418 GLY CYS PRO LYS CYS ASN HIS LYS GLY TYR ARG GLY ARG SEQRES 28 A 418 THR GLY ILE HIS GLU LEU LEU LEU VAL ASP ASP ALA LEU SEQRES 29 A 418 GLN GLU LEU ILE HIS SER GLU ALA GLY GLU GLN ALA MSE SEQRES 30 A 418 GLU LYS HIS ILE ARG ALA THR THR PRO SER ILE ARG ASP SEQRES 31 A 418 ASP GLY LEU ASP LYS VAL ARG GLN GLY ILE THR SER LEU SEQRES 32 A 418 GLU GLU VAL MSE ARG GLY SER ARG SER HIS HIS HIS HIS SEQRES 33 A 418 HIS HIS MODRES 1P9W MSE A 130 MET SELENOMETHIONINE MODRES 1P9W MSE A 182 MET SELENOMETHIONINE MODRES 1P9W MSE A 214 MET SELENOMETHIONINE MODRES 1P9W MSE A 224 MET SELENOMETHIONINE MODRES 1P9W MSE A 241 MET SELENOMETHIONINE MODRES 1P9W MSE A 313 MET SELENOMETHIONINE MODRES 1P9W MSE A 331 MET SELENOMETHIONINE MODRES 1P9W MSE A 355 MET SELENOMETHIONINE MODRES 1P9W MSE A 373 MET SELENOMETHIONINE MODRES 1P9W MSE A 467 MET SELENOMETHIONINE MODRES 1P9W MSE A 497 MET SELENOMETHIONINE HET MSE A 130 8 HET MSE A 182 8 HET MSE A 214 8 HET MSE A 224 8 HET MSE A 241 8 HET MSE A 313 8 HET MSE A 331 8 HET MSE A 355 8 HET MSE A 373 8 HET MSE A 467 8 HET MSE A 497 8 HET ZN A 601 1 HET ANP A 701 31 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 HOH *25(H2 O) HELIX 1 1 ASP A 100 GLU A 106 1 7 HELIX 2 2 ALA A 121 GLY A 138 1 18 HELIX 3 3 SER A 168 LYS A 170 5 3 HELIX 4 4 LEU A 171 LYS A 184 1 14 HELIX 5 5 ASP A 235 LEU A 239 5 5 HELIX 6 6 THR A 242 ILE A 253 1 12 HELIX 7 7 GLY A 269 ASN A 282 1 14 HELIX 8 8 ASN A 308 ASP A 312 5 5 HELIX 9 9 THR A 314 GLN A 325 1 12 HELIX 10 10 ASP A 337 THR A 350 1 14 HELIX 11 11 THR A 362 GLY A 374 1 13 HELIX 12 12 GLU A 376 SER A 383 1 8 HELIX 13 13 ASP A 407 LYS A 412 1 6 HELIX 14 14 ASP A 451 SER A 460 1 10 HELIX 15 15 GLY A 463 ALA A 473 1 11 HELIX 16 16 SER A 477 GLN A 488 1 12 HELIX 17 17 SER A 492 GLY A 499 1 8 SHEET 1 A 6 VAL A 160 LEU A 165 0 SHEET 2 A 6 THR A 150 VAL A 157 -1 N VAL A 157 O VAL A 160 SHEET 3 A 6 ASP A 141 PHE A 147 -1 N HIS A 143 O ARG A 154 SHEET 4 A 6 ARG A 221 MSE A 224 -1 O VAL A 222 N ILE A 144 SHEET 5 A 6 VAL A 207 MSE A 214 -1 N SER A 212 O VAL A 223 SHEET 6 A 6 GLN A 194 LEU A 200 -1 N GLY A 196 O VAL A 211 SHEET 1 B 6 VAL A 160 LEU A 165 0 SHEET 2 B 6 THR A 150 VAL A 157 -1 N VAL A 157 O VAL A 160 SHEET 3 B 6 ASP A 141 PHE A 147 -1 N HIS A 143 O ARG A 154 SHEET 4 B 6 ARG A 221 MSE A 224 -1 O VAL A 222 N ILE A 144 SHEET 5 B 6 VAL A 207 MSE A 214 -1 N SER A 212 O VAL A 223 SHEET 6 B 6 LEU A 227 ASP A 228 -1 O LEU A 227 N ASP A 208 SHEET 1 C 7 GLY A 303 GLN A 306 0 SHEET 2 C 7 ILE A 288 GLU A 292 1 N GLU A 292 O THR A 305 SHEET 3 C 7 VAL A 329 VAL A 332 1 O VAL A 329 N LEU A 289 SHEET 4 C 7 LEU A 353 LEU A 358 1 O LEU A 353 N VAL A 330 SHEET 5 C 7 GLY A 258 THR A 263 1 N VAL A 262 O SER A 356 SHEET 6 C 7 LEU A 384 LEU A 396 1 O LEU A 388 N LEU A 261 SHEET 7 C 7 TYR A 438 LEU A 449 -1 O THR A 442 N VAL A 393 SHEET 1 D 2 GLU A 402 GLU A 405 0 SHEET 2 D 2 ILE A 423 ARG A 426 -1 O LEU A 424 N TYR A 404 LINK ZN ZN A 601 SG CYS A 397 1555 1555 2.32 LINK ZN ZN A 601 SG CYS A 400 1555 1555 2.34 LINK ZN ZN A 601 SG CYS A 430 1555 1555 2.36 LINK ZN ZN A 601 SG CYS A 433 1555 1555 2.35 LINK C ALA A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N LEU A 131 1555 1555 1.34 LINK C VAL A 181 N MSE A 182 1555 1555 1.33 LINK C MSE A 182 N ALA A 183 1555 1555 1.33 LINK C THR A 213 N MSE A 214 1555 1555 1.33 LINK C MSE A 214 N PRO A 215 1555 1555 1.33 LINK C VAL A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N ARG A 225 1555 1555 1.33 LINK C GLY A 240 N MSE A 241 1555 1555 1.33 LINK C MSE A 241 N THR A 242 1555 1555 1.33 LINK C ASP A 312 N MSE A 313 1555 1555 1.33 LINK C MSE A 313 N THR A 314 1555 1555 1.33 LINK C VAL A 330 N MSE A 331 1555 1555 1.33 LINK C MSE A 331 N VAL A 332 1555 1555 1.33 LINK C VAL A 354 N MSE A 355 1555 1555 1.34 LINK C MSE A 355 N SER A 356 1555 1555 1.33 LINK C ASP A 372 N MSE A 373 1555 1555 1.33 LINK C MSE A 373 N GLY A 374 1555 1555 1.34 LINK C ALA A 466 N MSE A 467 1555 1555 1.33 LINK C MSE A 467 N GLU A 468 1555 1555 1.33 LINK C VAL A 496 N MSE A 497 1555 1555 1.33 LINK C MSE A 497 N ARG A 498 1555 1555 1.33 CISPEP 1 ASP A 293 PRO A 294 0 -5.45 SITE 1 AC1 4 CYS A 397 CYS A 400 CYS A 430 CYS A 433 SITE 1 AC2 12 THR A 232 LEU A 234 LEU A 239 THR A 266 SITE 2 AC2 12 GLY A 267 SER A 268 GLY A 269 LYS A 270 SITE 3 AC2 12 SER A 271 THR A 272 LEU A 392 ARG A 441 CRYST1 104.412 104.412 166.918 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009577 0.005530 0.000000 0.00000 SCALE2 0.000000 0.011059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005991 0.00000