PDB Short entry for 1P9Z HEADER ANTIFUNGAL PROTEIN 13-MAY-03 1P9Z TITLE THE SOLUTION STRUCTURE OF ANTIFUNGAL PEPTIDE DISTINCT WITH A FIVE- TITLE 2 DISULFIDE MOTIF FROM EUCOMMIA ULMOIDES OLIVER COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUCOMMIA ANTIFUNGAL PEPTIDE 2; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: EAFP2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUCOMMIA ULMOIDES; SOURCE 3 ORGANISM_TAXID: 4392; SOURCE 4 TISSUE: BARK KEYWDS ANTIFUNGAL PEPTIDE, CHITIN-BINDING PEPTIDE, DISULFIDE STABILIZED KEYWDS 2 MOTIF, ANTIFUNGAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR R.H.HUANG,Y.XIANG,G.Z.TU,Y.ZHANG,D.C.WANG REVDAT 4 25-DEC-19 1P9Z 1 REMARK SEQRES LINK REVDAT 3 28-APR-09 1P9Z 1 REMARK REVDAT 2 24-FEB-09 1P9Z 1 VERSN REVDAT 1 25-MAY-04 1P9Z 0 JRNL AUTH R.H.HUANG,Y.XIANG,G.Z.TU,Y.ZHANG,D.C.WANG JRNL TITL SOLUTION STRUCTURE OF EUCOMMIA ANTIFUNGAL PEPTIDE: A NOVEL JRNL TITL 2 STRUCTURAL MODEL DISTINCT WITH A FIVE-DISULFIDE MOTIF. JRNL REF BIOCHEMISTRY V. 43 6005 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15147184 JRNL DOI 10.1021/BI036263Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.H.HUANG,Y.XIANG,X.Z.LIU,Y.ZHANG,Z.HU,D.C.WANG REMARK 1 TITL TWO NOVEL ANTIFUNGAL PEPTIDES DISTINCT WITH A FIVE-DISULFIDE REMARK 1 TITL 2 MOTIF FRON THE BARK OF EUCOMMIA ULMOIDES OLIVER REMARK 1 REF FEBS LETT. V. 521 87 2002 REMARK 1 REFN ISSN 0014-5793 REMARK 1 DOI 10.1016/S0014-5793(02)02829-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, CNS 1.1 REMARK 3 AUTHORS : BRUKER CORP. (XWINNMR), BRUNGER, A.T. ETC. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 630 RESTRAINTS, 594 ARE NOE- REMARK 3 DERIVED REMARK 3 DISTANCE CONSTRAINTS, 16 DIHEDRAL ANGLE RESTRAINTS,20 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 1P9Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019193. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300; 290 REMARK 210 PH : 5.6; 5.6; 5.6 REMARK 210 IONIC STRENGTH : 20 MM PHOSPATE BUFFER; 20 MM REMARK 210 PHOSPATE BUFFER; 20 MM PHOSPATE REMARK 210 BUFFER REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 6MM ANTIFUNGAL PEPTIDE(EAFP2); REMARK 210 20 MM PHOSPHATE BUFFER,0.01 MM REMARK 210 EDTA; 6MM ANTIFUNGAL REMARK 210 PEPTIDE(EAFP2); 20 MM PHOSPHATE REMARK 210 BUFFER, 0.01 MMEDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.105, CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 40.21 -148.51 REMARK 500 1 ARG A 9 70.00 -115.99 REMARK 500 2 THR A 2 46.07 -148.44 REMARK 500 3 THR A 2 53.47 -152.77 REMARK 500 3 ASN A 12 -173.59 -63.93 REMARK 500 3 ASN A 34 28.32 -148.78 REMARK 500 4 THR A 2 43.57 -151.58 REMARK 500 4 ASN A 12 -170.64 -63.45 REMARK 500 4 CYS A 30 30.52 -150.65 REMARK 500 4 ASN A 34 33.83 -141.73 REMARK 500 6 THR A 2 35.88 -153.25 REMARK 500 6 ASN A 12 -170.42 -65.39 REMARK 500 6 ASN A 34 39.71 -160.06 REMARK 500 6 CYS A 39 -44.98 -131.20 REMARK 500 7 ASN A 12 -174.60 -59.48 REMARK 500 8 THR A 2 34.31 -148.79 REMARK 500 8 ASN A 34 43.96 -153.98 REMARK 500 9 ASN A 34 48.45 -152.79 REMARK 500 9 ARG A 40 30.70 -147.71 REMARK 500 10 THR A 2 45.28 -141.39 REMARK 500 10 CYS A 30 30.20 -160.08 REMARK 500 11 THR A 2 45.11 -158.80 REMARK 500 11 ALA A 32 76.16 -119.98 REMARK 500 12 THR A 2 44.11 -148.63 REMARK 500 12 ASN A 12 -171.44 -61.74 REMARK 500 12 ASN A 34 23.48 -143.28 REMARK 500 12 ARG A 40 30.93 -143.69 REMARK 500 15 ASN A 12 -171.22 -67.83 REMARK 500 17 ASN A 12 -169.69 -69.18 REMARK 500 17 CYS A 30 35.89 -152.65 REMARK 500 19 THR A 2 39.90 -144.32 REMARK 500 19 ASN A 12 -169.84 -73.74 REMARK 500 20 PRO A 8 44.21 -97.12 REMARK 500 20 ARG A 9 51.99 -143.42 REMARK 500 20 ASN A 12 -171.09 -59.63 REMARK 500 20 ASN A 34 32.94 -160.10 REMARK 500 20 ARG A 40 30.50 -162.16 REMARK 500 21 THR A 2 48.40 -140.44 REMARK 500 21 ASN A 12 -177.31 -63.90 REMARK 500 21 ASN A 34 30.58 -159.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5795 RELATED DB: BMRB REMARK 900 THE CHEMICAL SHIFTS OF THE HYDROGENS DBREF 1P9Z A 1 41 UNP P83597 EAP2_EUCUL 1 41 SEQRES 1 A 41 PCA THR CYS ALA SER ARG CYS PRO ARG PRO CYS ASN ALA SEQRES 2 A 41 GLY LEU CYS CYS SER ILE TYR GLY TYR CYS GLY SER GLY SEQRES 3 A 41 ALA ALA TYR CYS GLY ALA GLY ASN CYS ARG CYS GLN CYS SEQRES 4 A 41 ARG GLY MODRES 1P9Z PCA A 1 GLN PYROGLUTAMIC ACID HET PCA A 1 14 HETNAM PCA PYROGLUTAMIC ACID FORMUL 1 PCA C5 H7 N O3 HELIX 1 1 CYS A 3 ARG A 6 5 4 HELIX 2 2 GLY A 26 CYS A 30 1 5 SHEET 1 A 3 TYR A 22 GLY A 24 0 SHEET 2 A 3 CYS A 16 SER A 18 -1 O TYR A 22 N SER A 18 SHEET 3 A 3 ARG A 36 CYS A 37 -1 O CYS A 37 N CYS A 17 SSBOND 1 CYS A 3 CYS A 17 1555 1555 2.03 SSBOND 2 CYS A 7 CYS A 37 1555 1555 2.03 SSBOND 3 CYS A 11 CYS A 23 1555 1555 2.03 SSBOND 4 CYS A 16 CYS A 30 1555 1555 2.03 SSBOND 5 CYS A 35 CYS A 39 1555 1555 2.03 LINK C PCA A 1 N THR A 2 1555 1555 1.33 CISPEP 1 CYS A 7 PRO A 8 1 0.03 CISPEP 2 CYS A 7 PRO A 8 2 0.16 CISPEP 3 CYS A 7 PRO A 8 3 0.22 CISPEP 4 CYS A 7 PRO A 8 4 0.14 CISPEP 5 CYS A 7 PRO A 8 5 0.28 CISPEP 6 CYS A 7 PRO A 8 6 0.08 CISPEP 7 CYS A 7 PRO A 8 7 0.16 CISPEP 8 CYS A 7 PRO A 8 8 0.25 CISPEP 9 CYS A 7 PRO A 8 9 0.11 CISPEP 10 CYS A 7 PRO A 8 10 0.45 CISPEP 11 CYS A 7 PRO A 8 11 0.13 CISPEP 12 CYS A 7 PRO A 8 12 0.23 CISPEP 13 CYS A 7 PRO A 8 13 0.32 CISPEP 14 CYS A 7 PRO A 8 14 0.40 CISPEP 15 CYS A 7 PRO A 8 15 0.41 CISPEP 16 CYS A 7 PRO A 8 16 0.28 CISPEP 17 CYS A 7 PRO A 8 17 0.51 CISPEP 18 CYS A 7 PRO A 8 18 0.44 CISPEP 19 CYS A 7 PRO A 8 19 0.15 CISPEP 20 CYS A 7 PRO A 8 20 0.73 CISPEP 21 CYS A 7 PRO A 8 21 0.43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000