PDB Short entry for 1PD1 HEADER TRANSPORT PROTEIN 18-MAY-03 1PD1 TITLE CRYSTAL STRUCTURE OF THE COPII COAT SUBUNIT, SEC24, COMPLEXED WITH A TITLE 2 PEPTIDE CONTAINING THE DXE CARGO SORTING SIGNAL OF YEAST SYS1 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC24; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ABNORMAL NUCLEAR MORPHOLOGY 1; COMPND 5 OTHER_DETAILS: SEC24 FRAGMENT LACKING N-TERMINAL RESIDUES 1-116; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DXE CARGO SORTING SIGNAL PEPTIDE OF YEAST SYS1 PROTEIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 8 OF THE PEPTIDE IS NATURALLY FOUND IN SACCHAROMYCES CEREVISIAE KEYWDS TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.MOSSESSOVA,L.C.BICKFORD,J.GOLDBERG REVDAT 4 14-FEB-24 1PD1 1 REMARK LINK REVDAT 3 24-FEB-09 1PD1 1 VERSN REVDAT 2 18-JAN-05 1PD1 1 JRNL REVDAT 1 19-AUG-03 1PD1 0 JRNL AUTH E.MOSSESSOVA,L.C.BICKFORD,J.GOLDBERG JRNL TITL SNARE SELECTIVITY OF THE COPII COAT. JRNL REF CELL(CAMBRIDGE,MASS.) V. 114 483 2003 JRNL REFN ISSN 0092-8674 JRNL PMID 12941276 JRNL DOI 10.1016/S0092-8674(03)00608-1 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1996522.220 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 28764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1471 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1495 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 81 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5892 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.22000 REMARK 3 B22 (A**2) : 7.22000 REMARK 3 B33 (A**2) : -14.45000 REMARK 3 B12 (A**2) : 6.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.310 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.890 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.810 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 36.82 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : &_1_PARAMETER_INFILE_4 REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : &_1_TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29281 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16400 REMARK 200 R SYM FOR SHELL (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 13.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE 1,6-HEXANEDIOL, COBALT REMARK 280 CHLORIDE, PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 133.28467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.64233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.64233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 133.28467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 PRO A 119 REMARK 465 ALA A 120 REMARK 465 TYR A 121 REMARK 465 GLY A 122 REMARK 465 GLN A 123 REMARK 465 PRO A 124 REMARK 465 SER A 125 REMARK 465 ALA A 126 REMARK 465 ALA A 127 REMARK 465 MET A 128 REMARK 465 GLY A 129 REMARK 465 GLN A 130 REMARK 465 ASN A 131 REMARK 465 MET A 132 REMARK 465 SER A 269 REMARK 465 ASP A 270 REMARK 465 PRO A 271 REMARK 465 ASN A 272 REMARK 465 ASP A 273 REMARK 465 ASN A 366 REMARK 465 GLU A 367 REMARK 465 GLU A 368 REMARK 465 SER A 369 REMARK 465 ALA A 370 REMARK 465 ASP A 371 REMARK 465 GLN A 372 REMARK 465 PRO A 384 REMARK 465 PHE A 385 REMARK 465 LEU A 386 REMARK 465 PRO A 387 REMARK 465 ARG A 388 REMARK 465 ARG A 460 REMARK 465 ASN A 461 REMARK 465 GLU A 462 REMARK 465 SER A 463 REMARK 465 GLY A 464 REMARK 465 VAL A 465 REMARK 465 VAL A 466 REMARK 465 ASN A 467 REMARK 465 THR A 468 REMARK 465 SER A 469 REMARK 465 LYS A 470 REMARK 465 GLU A 471 REMARK 465 THR A 472 REMARK 465 ALA A 473 REMARK 465 GLN A 474 REMARK 465 LEU A 475 REMARK 465 LEU A 476 REMARK 465 SER A 477 REMARK 465 CYS A 478 REMARK 465 GLN A 479 REMARK 465 VAL A 692 REMARK 465 SER A 693 REMARK 465 ASN A 694 REMARK 465 THR A 695 REMARK 465 GLN A 771 REMARK 465 THR A 772 REMARK 465 GLU A 773 REMARK 465 ASP A 774 REMARK 465 GLY A 775 REMARK 465 GLU A 776 REMARK 465 ALA A 777 REMARK 465 THR A 778 REMARK 465 SER A 878 REMARK 465 LEU A 879 REMARK 465 SER A 880 REMARK 465 GLU A 881 REMARK 465 PRO A 882 REMARK 465 VAL A 883 REMARK 465 ASN A 884 REMARK 465 HIS A 885 REMARK 465 ALA A 886 REMARK 465 SER A 887 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 482 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 382 OE2 GLU A 382 6555 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 134 54.92 -65.89 REMARK 500 ILE A 151 -7.25 -58.52 REMARK 500 GLU A 246 76.38 52.58 REMARK 500 GLN A 247 6.84 58.31 REMARK 500 MET A 266 -33.98 -36.49 REMARK 500 GLU A 295 1.58 -68.45 REMARK 500 ASN A 338 52.20 -158.35 REMARK 500 GLU A 341 9.90 59.15 REMARK 500 ASP A 351 -111.45 -130.40 REMARK 500 SER A 391 -2.37 84.91 REMARK 500 VAL A 438 -16.99 -145.72 REMARK 500 PHE A 575 -177.19 -178.23 REMARK 500 ARG A 578 -73.82 -109.32 REMARK 500 PRO A 589 -169.14 -73.24 REMARK 500 ASP A 601 -73.19 -88.02 REMARK 500 ASN A 621 24.34 -153.28 REMARK 500 LEU A 664 14.65 -61.79 REMARK 500 ASN A 665 -40.26 -148.42 REMARK 500 SER A 666 -95.84 -103.06 REMARK 500 PRO A 769 174.06 -58.35 REMARK 500 LEU A 908 -101.63 70.70 REMARK 500 LEU B 483 73.75 -65.18 REMARK 500 LYS B 484 125.17 -176.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 950 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 231 SG REMARK 620 2 CYS A 234 SG 100.0 REMARK 620 3 CYS A 253 SG 110.5 100.8 REMARK 620 4 CYS A 256 SG 102.1 114.0 126.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 950 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PCX RELATED DB: PDB REMARK 900 RELATED ID: 1PD0 RELATED DB: PDB DBREF 1PD1 A 117 926 UNP P40482 SEC24_YEAST 117 926 DBREF 1PD1 B 482 490 PDB 1PD1 1PD1 482 490 SEQRES 1 A 810 ALA ALA PRO ALA TYR GLY GLN PRO SER ALA ALA MET GLY SEQRES 2 A 810 GLN ASN MET ARG PRO MET ASN GLN LEU TYR PRO ILE ASP SEQRES 3 A 810 LEU LEU THR GLU LEU PRO PRO PRO ILE THR ASP LEU THR SEQRES 4 A 810 LEU PRO PRO PRO PRO LEU VAL ILE PRO PRO GLU ARG MET SEQRES 5 A 810 LEU VAL PRO SER GLU LEU SER ASN ALA SER PRO ASP TYR SEQRES 6 A 810 ILE ARG SER THR LEU ASN ALA VAL PRO LYS ASN SER SER SEQRES 7 A 810 LEU LEU LYS LYS SER LYS LEU PRO PHE GLY LEU VAL ILE SEQRES 8 A 810 ARG PRO TYR GLN HIS LEU TYR ASP ASP ILE ASP PRO PRO SEQRES 9 A 810 PRO LEU ASN GLU ASP GLY LEU ILE VAL ARG CYS ARG ARG SEQRES 10 A 810 CYS ARG SER TYR MET ASN PRO PHE VAL THR PHE ILE GLU SEQRES 11 A 810 GLN GLY ARG ARG TRP ARG CYS ASN PHE CYS ARG LEU ALA SEQRES 12 A 810 ASN ASP VAL PRO MET GLN MET ASP GLN SER ASP PRO ASN SEQRES 13 A 810 ASP PRO LYS SER ARG TYR ASP ARG ASN GLU ILE LYS CYS SEQRES 14 A 810 ALA VAL MET GLU TYR MET ALA PRO LYS GLU TYR THR LEU SEQRES 15 A 810 ARG GLN PRO PRO PRO ALA THR TYR CYS PHE LEU ILE ASP SEQRES 16 A 810 VAL SER GLN SER SER ILE LYS SER GLY LEU LEU ALA THR SEQRES 17 A 810 THR ILE ASN THR LEU LEU GLN ASN LEU ASP SER ILE PRO SEQRES 18 A 810 ASN HIS ASP GLU ARG THR ARG ILE SER ILE LEU CYS VAL SEQRES 19 A 810 ASP ASN ALA ILE HIS TYR PHE LYS ILE PRO LEU ASP SER SEQRES 20 A 810 GLU ASN ASN GLU GLU SER ALA ASP GLN ILE ASN MET MET SEQRES 21 A 810 ASP ILE ALA ASP LEU GLU GLU PRO PHE LEU PRO ARG PRO SEQRES 22 A 810 ASN SER MET VAL VAL SER LEU LYS ALA CYS ARG GLN ASN SEQRES 23 A 810 ILE GLU THR LEU LEU THR LYS ILE PRO GLN ILE PHE GLN SEQRES 24 A 810 SER ASN LEU ILE THR ASN PHE ALA LEU GLY PRO ALA LEU SEQRES 25 A 810 LYS SER ALA TYR HIS LEU ILE GLY GLY VAL GLY GLY LYS SEQRES 26 A 810 ILE ILE VAL VAL SER GLY THR LEU PRO ASN LEU GLY ILE SEQRES 27 A 810 GLY LYS LEU GLN ARG ARG ASN GLU SER GLY VAL VAL ASN SEQRES 28 A 810 THR SER LYS GLU THR ALA GLN LEU LEU SER CYS GLN ASP SEQRES 29 A 810 SER PHE TYR LYS ASN PHE THR ILE ASP CYS SER LYS VAL SEQRES 30 A 810 GLN ILE THR VAL ASP LEU PHE LEU ALA SER GLU ASP TYR SEQRES 31 A 810 MET ASP VAL ALA SER LEU SER ASN LEU SER ARG PHE THR SEQRES 32 A 810 ALA GLY GLN THR HIS PHE TYR PRO GLY PHE SER GLY LYS SEQRES 33 A 810 ASN PRO ASN ASP ILE VAL LYS PHE SER THR GLU PHE ALA SEQRES 34 A 810 LYS HIS ILE SER MET ASP PHE CYS MET GLU THR VAL MET SEQRES 35 A 810 ARG ALA ARG GLY SER THR GLY LEU ARG MET SER ARG PHE SEQRES 36 A 810 TYR GLY HIS PHE PHE ASN ARG SER SER ASP LEU CYS ALA SEQRES 37 A 810 PHE SER THR MET PRO ARG ASP GLN SER TYR LEU PHE GLU SEQRES 38 A 810 VAL ASN VAL ASP GLU SER ILE MET ALA ASP TYR CYS TYR SEQRES 39 A 810 VAL GLN VAL ALA VAL LEU LEU SER LEU ASN ASN SER GLN SEQRES 40 A 810 ARG ARG ILE ARG ILE ILE THR LEU ALA MET PRO THR THR SEQRES 41 A 810 GLU SER LEU ALA GLU VAL TYR ALA SER ALA ASP GLN LEU SEQRES 42 A 810 ALA ILE ALA SER PHE TYR ASN SER LYS ALA VAL GLU LYS SEQRES 43 A 810 ALA LEU ASN SER SER LEU ASP ASP ALA ARG VAL LEU ILE SEQRES 44 A 810 ASN LYS SER VAL GLN ASP ILE LEU ALA THR TYR LYS LYS SEQRES 45 A 810 GLU ILE VAL VAL SER ASN THR ALA GLY GLY ALA PRO LEU SEQRES 46 A 810 ARG LEU CYS ALA ASN LEU ARG MET PHE PRO LEU LEU MET SEQRES 47 A 810 HIS SER LEU THR LYS HIS MET ALA PHE ARG SER GLY ILE SEQRES 48 A 810 VAL PRO SER ASP HIS ARG ALA SER ALA LEU ASN ASN LEU SEQRES 49 A 810 GLU SER LEU PRO LEU LYS TYR LEU ILE LYS ASN ILE TYR SEQRES 50 A 810 PRO ASP VAL TYR SER LEU HIS ASP MET ALA ASP GLU ALA SEQRES 51 A 810 GLY LEU PRO VAL GLN THR GLU ASP GLY GLU ALA THR GLY SEQRES 52 A 810 THR ILE VAL LEU PRO GLN PRO ILE ASN ALA THR SER SER SEQRES 53 A 810 LEU PHE GLU ARG TYR GLY LEU TYR LEU ILE ASP ASN GLY SEQRES 54 A 810 ASN GLU LEU PHE LEU TRP MET GLY GLY ASP ALA VAL PRO SEQRES 55 A 810 ALA LEU VAL PHE ASP VAL PHE GLY THR GLN ASP ILE PHE SEQRES 56 A 810 ASP ILE PRO ILE GLY LYS GLN GLU ILE PRO VAL VAL GLU SEQRES 57 A 810 ASN SER GLU PHE ASN GLN ARG VAL ARG ASN ILE ILE ASN SEQRES 58 A 810 GLN LEU ARG ASN HIS ASP ASP VAL ILE THR TYR GLN SER SEQRES 59 A 810 LEU TYR ILE VAL ARG GLY ALA SER LEU SER GLU PRO VAL SEQRES 60 A 810 ASN HIS ALA SER ALA ARG GLU VAL ALA THR LEU ARG LEU SEQRES 61 A 810 TRP ALA SER SER THR LEU VAL GLU ASP LYS ILE LEU ASN SEQRES 62 A 810 ASN GLU SER TYR ARG GLU PHE LEU GLN ILE MET LYS ALA SEQRES 63 A 810 ARG ILE SER LYS SEQRES 1 B 9 GLN LEU LYS ASP LEU GLU SER GLN ILE HET ZN A 950 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *166(H2 O) HELIX 1 1 LEU A 144 GLU A 146 5 3 HELIX 2 2 PRO A 150 LEU A 156 5 7 HELIX 3 3 PRO A 164 MET A 168 5 5 HELIX 4 4 ASN A 192 LYS A 200 1 9 HELIX 5 5 PRO A 263 GLN A 268 5 6 HELIX 6 6 SER A 276 ASP A 279 5 4 HELIX 7 7 ARG A 280 CYS A 285 1 6 HELIX 8 8 PRO A 293 THR A 297 5 5 HELIX 9 9 SER A 313 GLY A 320 1 8 HELIX 10 10 GLY A 320 LEU A 333 1 14 HELIX 11 11 LEU A 361 ASN A 365 5 5 HELIX 12 12 CYS A 399 PHE A 414 1 16 HELIX 13 13 ALA A 423 GLY A 436 1 14 HELIX 14 14 SER A 481 GLN A 494 1 14 HELIX 15 15 ASP A 508 PHE A 518 1 11 HELIX 16 16 ASN A 533 MET A 550 1 18 HELIX 17 17 SER A 638 SER A 645 1 8 HELIX 18 18 ASP A 647 LEU A 664 1 18 HELIX 19 19 SER A 667 ILE A 690 1 24 HELIX 20 20 ASN A 706 ARG A 708 5 3 HELIX 21 21 MET A 709 HIS A 720 1 12 HELIX 22 22 PRO A 729 LEU A 743 1 15 HELIX 23 23 PRO A 744 TYR A 753 1 10 HELIX 24 24 THR A 790 PHE A 794 5 5 HELIX 25 25 VAL A 817 GLY A 826 1 10 HELIX 26 26 ASP A 829 ILE A 833 5 5 HELIX 27 27 SER A 846 LEU A 859 1 14 HELIX 28 28 ALA A 888 LEU A 902 1 15 HELIX 29 29 SER A 912 ILE A 924 1 13 SHEET 1 A 2 PRO A 140 ASP A 142 0 SHEET 2 A 2 ARG A 702 CYS A 704 -1 O LEU A 703 N ILE A 141 SHEET 1 B 4 ILE A 182 SER A 184 0 SHEET 2 B 4 GLY A 204 ILE A 207 -1 O VAL A 206 N ARG A 183 SHEET 3 B 4 TYR A 594 VAL A 600 -1 O PHE A 596 N LEU A 205 SHEET 4 B 4 LEU A 566 TYR A 572 -1 N TYR A 572 O LEU A 595 SHEET 1 C 4 VAL A 189 PRO A 190 0 SHEET 2 C 4 ARG A 624 THR A 636 1 O PRO A 634 N VAL A 189 SHEET 3 C 4 VAL A 287 MET A 291 -1 N MET A 288 O ILE A 628 SHEET 4 C 4 LEU A 222 ASN A 223 1 N ASN A 223 O GLU A 289 SHEET 1 D 5 VAL A 189 PRO A 190 0 SHEET 2 D 5 ARG A 624 THR A 636 1 O PRO A 634 N VAL A 189 SHEET 3 D 5 TYR A 608 LEU A 619 -1 N VAL A 611 O LEU A 631 SHEET 4 D 5 CYS A 553 GLY A 562 -1 N ARG A 559 O ALA A 614 SHEET 5 D 5 CYS A 583 MET A 588 -1 O PHE A 585 N THR A 556 SHEET 1 E 3 THR A 243 ILE A 245 0 SHEET 2 E 3 ARG A 250 ARG A 252 -1 O ARG A 252 N THR A 243 SHEET 3 E 3 ALA A 259 ASP A 261 -1 O ASN A 260 N TRP A 251 SHEET 1 F 4 ASN A 374 ILE A 378 0 SHEET 2 F 4 ILE A 354 LYS A 358 -1 N TYR A 356 O MET A 376 SHEET 3 F 4 ARG A 344 VAL A 350 -1 N CYS A 349 O HIS A 355 SHEET 4 F 4 VAL A 393 SER A 395 -1 O VAL A 394 N ILE A 345 SHEET 1 G 7 ASN A 374 ILE A 378 0 SHEET 2 G 7 ILE A 354 LYS A 358 -1 N TYR A 356 O MET A 376 SHEET 3 G 7 ARG A 344 VAL A 350 -1 N CYS A 349 O HIS A 355 SHEET 4 G 7 THR A 305 ASP A 311 1 N ILE A 310 O LEU A 348 SHEET 5 G 7 GLY A 440 SER A 446 1 O VAL A 445 N LEU A 309 SHEET 6 G 7 ILE A 495 SER A 503 1 O ASP A 498 N VAL A 444 SHEET 7 G 7 THR A 523 PRO A 527 1 O HIS A 524 N LEU A 499 SHEET 1 H 5 ASP A 755 SER A 758 0 SHEET 2 H 5 LEU A 799 ASP A 803 -1 O ASP A 803 N ASP A 755 SHEET 3 H 5 GLU A 807 MET A 812 -1 O TRP A 811 N TYR A 800 SHEET 4 H 5 SER A 870 ARG A 875 1 O TYR A 872 N LEU A 810 SHEET 5 H 5 GLY A 836 LYS A 837 -1 N GLY A 836 O ILE A 873 LINK SG CYS A 231 ZN ZN A 950 1555 1555 2.56 LINK SG CYS A 234 ZN ZN A 950 1555 1555 2.43 LINK SG CYS A 253 ZN ZN A 950 1555 1555 2.34 LINK SG CYS A 256 ZN ZN A 950 1555 1555 2.46 CISPEP 1 LEU A 147 PRO A 148 0 0.07 SITE 1 AC1 4 CYS A 231 CYS A 234 CYS A 253 CYS A 256 CRYST1 93.949 93.949 199.927 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010644 0.006145 0.000000 0.00000 SCALE2 0.000000 0.012291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005002 0.00000