PDB Short entry for 1PFM HEADER CYTOKINE 18-JUL-95 1PFM TITLE PF4-M2 CHIMERIC MUTANT WITH THE FIRST 10 N-TERMINAL RESIDUES OF R-PF4 TITLE 2 REPLACED BY THE N-TERMINAL RESIDUES OF THE IL8 SEQUENCE. MODELS 1-15 TITLE 3 OF A 27-MODEL SET. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PF4-M2 CHIMERA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PLATELET FACTOR 4, PLATELET FACTOR M2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: BL21 KEYWDS CYTOKINE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR K.H.MAYO,V.ROONGTA,E.ILYINA,R.MILIUS,S.BARKER,C.QUINLAN,G.LA ROSA, AUTHOR 2 T.J.DALY REVDAT 3 03-NOV-21 1PFM 1 REMARK SEQADV REVDAT 2 24-FEB-09 1PFM 1 VERSN REVDAT 1 29-JAN-96 1PFM 0 JRNL AUTH K.H.MAYO,V.ROONGTA,E.ILYINA,R.MILIUS,S.BARKER,C.QUINLAN, JRNL AUTH 2 G.LA ROSA,T.J.DALY JRNL TITL NMR SOLUTION STRUCTURE OF THE 32-KDA PLATELET FACTOR 4 JRNL TITL 2 ELR-MOTIF N-TERMINAL CHIMERA: A SYMMETRIC TETRAMER. JRNL REF BIOCHEMISTRY V. 34 11399 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7547867 JRNL DOI 10.1021/BI00036A012 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.ZHANG,L.CHEN,D.P.BANCROFT,C.K.LAI,T.E.MAIONE REMARK 1 TITL CRYSTAL STRUCTURE OF RECOMBINANT HUMAN PLATELET FACTOR 4 REMARK 1 REF BIOCHEMISTRY V. 33 8361 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PFM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175644. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 5 -83.42 -68.97 REMARK 500 1 LYS A 6 118.10 -172.99 REMARK 500 1 GLU A 7 89.11 54.64 REMARK 500 1 LEU A 8 -165.45 -111.50 REMARK 500 1 LYS A 14 167.96 57.82 REMARK 500 1 THR A 16 57.16 -91.30 REMARK 500 1 ARG A 22 -71.54 179.60 REMARK 500 1 ILE A 24 172.57 -50.65 REMARK 500 1 THR A 25 -46.53 -130.85 REMARK 500 1 ILE A 51 -138.99 -119.52 REMARK 500 1 CYS A 52 149.76 -175.34 REMARK 500 1 ALA B 5 101.81 -171.86 REMARK 500 1 LEU B 8 -84.93 -124.37 REMARK 500 1 ARG B 9 65.29 -161.87 REMARK 500 1 LYS B 14 167.95 58.41 REMARK 500 1 THR B 16 56.81 -91.31 REMARK 500 1 ARG B 22 -71.48 -179.68 REMARK 500 1 ILE B 24 172.26 -51.46 REMARK 500 1 THR B 25 -45.79 -131.88 REMARK 500 1 ILE B 51 -138.32 -118.95 REMARK 500 1 SER C 4 -60.84 -176.69 REMARK 500 1 ALA C 5 -63.64 -171.28 REMARK 500 1 LYS C 6 137.94 69.75 REMARK 500 1 GLU C 7 81.91 54.51 REMARK 500 1 ARG C 9 101.65 -167.39 REMARK 500 1 LYS C 14 168.18 58.11 REMARK 500 1 THR C 16 56.30 -90.91 REMARK 500 1 ARG C 22 -70.35 -179.10 REMARK 500 1 ILE C 24 177.67 -53.98 REMARK 500 1 THR C 25 -49.38 -136.25 REMARK 500 1 LEU C 45 -169.32 -105.12 REMARK 500 1 ILE C 51 -136.05 -118.25 REMARK 500 1 CYS C 52 149.46 -177.70 REMARK 500 1 LEU C 55 19.28 -140.34 REMARK 500 1 SER D 4 -169.78 -120.81 REMARK 500 1 ALA D 5 -158.54 -117.55 REMARK 500 1 GLU D 7 99.06 61.55 REMARK 500 1 LEU D 8 -75.13 -160.63 REMARK 500 1 ARG D 9 60.69 -171.07 REMARK 500 1 LYS D 14 166.91 58.61 REMARK 500 1 THR D 16 57.29 -91.39 REMARK 500 1 ARG D 22 -78.80 177.97 REMARK 500 1 ILE D 24 175.73 -49.44 REMARK 500 1 THR D 25 -47.15 -132.35 REMARK 500 1 ILE D 51 -139.29 -129.83 REMARK 500 2 ALA A 5 97.49 59.96 REMARK 500 2 LYS A 6 132.20 177.58 REMARK 500 2 GLU A 7 -89.95 63.16 REMARK 500 2 LEU A 8 -89.39 55.97 REMARK 500 2 ARG A 9 61.69 -172.48 REMARK 500 REMARK 500 THIS ENTRY HAS 667 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 9 0.22 SIDE CHAIN REMARK 500 1 ARG A 20 0.32 SIDE CHAIN REMARK 500 1 ARG A 22 0.28 SIDE CHAIN REMARK 500 1 ARG A 49 0.30 SIDE CHAIN REMARK 500 1 ARG B 9 0.16 SIDE CHAIN REMARK 500 1 ARG B 20 0.23 SIDE CHAIN REMARK 500 1 ARG B 22 0.20 SIDE CHAIN REMARK 500 1 ARG B 49 0.28 SIDE CHAIN REMARK 500 1 ARG C 9 0.29 SIDE CHAIN REMARK 500 1 ARG C 20 0.28 SIDE CHAIN REMARK 500 1 ARG C 22 0.29 SIDE CHAIN REMARK 500 1 ARG C 49 0.30 SIDE CHAIN REMARK 500 1 ARG D 9 0.27 SIDE CHAIN REMARK 500 1 ARG D 20 0.32 SIDE CHAIN REMARK 500 1 ARG D 22 0.26 SIDE CHAIN REMARK 500 1 ARG D 49 0.32 SIDE CHAIN REMARK 500 2 ARG A 9 0.31 SIDE CHAIN REMARK 500 2 ARG A 20 0.23 SIDE CHAIN REMARK 500 2 ARG A 22 0.27 SIDE CHAIN REMARK 500 2 ARG A 49 0.29 SIDE CHAIN REMARK 500 2 ARG B 9 0.25 SIDE CHAIN REMARK 500 2 ARG B 20 0.23 SIDE CHAIN REMARK 500 2 ARG B 22 0.32 SIDE CHAIN REMARK 500 2 ARG B 49 0.32 SIDE CHAIN REMARK 500 2 ARG C 9 0.32 SIDE CHAIN REMARK 500 2 ARG C 20 0.26 SIDE CHAIN REMARK 500 2 ARG C 22 0.29 SIDE CHAIN REMARK 500 2 ARG C 49 0.30 SIDE CHAIN REMARK 500 2 ARG D 9 0.31 SIDE CHAIN REMARK 500 2 ARG D 20 0.32 SIDE CHAIN REMARK 500 2 ARG D 22 0.29 SIDE CHAIN REMARK 500 2 ARG D 49 0.31 SIDE CHAIN REMARK 500 3 ARG A 9 0.30 SIDE CHAIN REMARK 500 3 ARG A 20 0.28 SIDE CHAIN REMARK 500 3 ARG A 22 0.28 SIDE CHAIN REMARK 500 3 ARG A 49 0.32 SIDE CHAIN REMARK 500 3 ARG B 9 0.25 SIDE CHAIN REMARK 500 3 ARG B 20 0.30 SIDE CHAIN REMARK 500 3 ARG B 22 0.24 SIDE CHAIN REMARK 500 3 ARG B 49 0.29 SIDE CHAIN REMARK 500 3 ARG C 9 0.25 SIDE CHAIN REMARK 500 3 ARG C 20 0.30 SIDE CHAIN REMARK 500 3 ARG C 22 0.28 SIDE CHAIN REMARK 500 3 ARG C 49 0.30 SIDE CHAIN REMARK 500 3 ARG D 9 0.31 SIDE CHAIN REMARK 500 3 ARG D 20 0.28 SIDE CHAIN REMARK 500 3 ARG D 22 0.30 SIDE CHAIN REMARK 500 3 ARG D 49 0.26 SIDE CHAIN REMARK 500 4 ARG A 9 0.18 SIDE CHAIN REMARK 500 4 ARG A 20 0.19 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 240 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1PFM A 8 70 UNP P02776 PLF4_HUMAN 39 101 DBREF 1PFM B 8 70 UNP P02776 PLF4_HUMAN 39 101 DBREF 1PFM C 8 70 UNP P02776 PLF4_HUMAN 39 101 DBREF 1PFM D 8 70 UNP P02776 PLF4_HUMAN 39 101 SEQADV 1PFM ARG A 9 UNP P02776 GLN 40 ENGINEERED MUTATION SEQADV 1PFM GLN A 11 UNP P02776 LEU 42 ENGINEERED MUTATION SEQADV 1PFM ARG B 9 UNP P02776 GLN 40 ENGINEERED MUTATION SEQADV 1PFM GLN B 11 UNP P02776 LEU 42 ENGINEERED MUTATION SEQADV 1PFM ARG C 9 UNP P02776 GLN 40 ENGINEERED MUTATION SEQADV 1PFM GLN C 11 UNP P02776 LEU 42 ENGINEERED MUTATION SEQADV 1PFM ARG D 9 UNP P02776 GLN 40 ENGINEERED MUTATION SEQADV 1PFM GLN D 11 UNP P02776 LEU 42 ENGINEERED MUTATION SEQRES 1 A 68 MET SER ALA LYS GLU LEU ARG CYS GLN CYS VAL LYS THR SEQRES 2 A 68 THR SER GLN VAL ARG PRO ARG HIS ILE THR SER LEU GLU SEQRES 3 A 68 VAL ILE LYS ALA GLY PRO HIS CYS PRO THR ALA GLN LEU SEQRES 4 A 68 ILE ALA THR LEU LYS ASN GLY ARG LYS ILE CYS LEU ASP SEQRES 5 A 68 LEU GLN ALA PRO LEU TYR LYS LYS ILE ILE LYS LYS LEU SEQRES 6 A 68 LEU GLU SER SEQRES 1 B 68 MET SER ALA LYS GLU LEU ARG CYS GLN CYS VAL LYS THR SEQRES 2 B 68 THR SER GLN VAL ARG PRO ARG HIS ILE THR SER LEU GLU SEQRES 3 B 68 VAL ILE LYS ALA GLY PRO HIS CYS PRO THR ALA GLN LEU SEQRES 4 B 68 ILE ALA THR LEU LYS ASN GLY ARG LYS ILE CYS LEU ASP SEQRES 5 B 68 LEU GLN ALA PRO LEU TYR LYS LYS ILE ILE LYS LYS LEU SEQRES 6 B 68 LEU GLU SER SEQRES 1 C 68 MET SER ALA LYS GLU LEU ARG CYS GLN CYS VAL LYS THR SEQRES 2 C 68 THR SER GLN VAL ARG PRO ARG HIS ILE THR SER LEU GLU SEQRES 3 C 68 VAL ILE LYS ALA GLY PRO HIS CYS PRO THR ALA GLN LEU SEQRES 4 C 68 ILE ALA THR LEU LYS ASN GLY ARG LYS ILE CYS LEU ASP SEQRES 5 C 68 LEU GLN ALA PRO LEU TYR LYS LYS ILE ILE LYS LYS LEU SEQRES 6 C 68 LEU GLU SER SEQRES 1 D 68 MET SER ALA LYS GLU LEU ARG CYS GLN CYS VAL LYS THR SEQRES 2 D 68 THR SER GLN VAL ARG PRO ARG HIS ILE THR SER LEU GLU SEQRES 3 D 68 VAL ILE LYS ALA GLY PRO HIS CYS PRO THR ALA GLN LEU SEQRES 4 D 68 ILE ALA THR LEU LYS ASN GLY ARG LYS ILE CYS LEU ASP SEQRES 5 D 68 LEU GLN ALA PRO LEU TYR LYS LYS ILE ILE LYS LYS LEU SEQRES 6 D 68 LEU GLU SER HELIX 1 1 PRO A 58 LEU A 68 1 11 HELIX 2 2 PRO B 58 LEU B 68 1 11 HELIX 3 3 PRO C 58 LEU C 68 1 11 HELIX 4 4 PRO D 58 LEU D 68 1 11 SHEET 1 A 4 GLN A 40 THR A 44 0 SHEET 2 A 4 SER A 26 ILE A 30 -1 N ILE A 30 O GLN A 40 SHEET 3 A 4 SER B 26 ILE B 30 -1 N VAL B 29 O LEU A 27 SHEET 4 A 4 GLN B 40 THR B 44 -1 N THR B 44 O SER B 26 SHEET 1 B 4 GLN C 40 THR C 44 0 SHEET 2 B 4 SER C 26 ILE C 30 -1 N ILE C 30 O GLN C 40 SHEET 3 B 4 SER D 26 ILE D 30 -1 N VAL D 29 O LEU C 27 SHEET 4 B 4 GLN D 40 THR D 44 -1 N THR D 44 O SER D 26 SSBOND 1 CYS A 10 CYS A 36 1555 1555 2.03 SSBOND 2 CYS A 12 CYS A 52 1555 1555 2.02 SSBOND 3 CYS B 10 CYS B 36 1555 1555 2.02 SSBOND 4 CYS B 12 CYS B 52 1555 1555 2.02 SSBOND 5 CYS C 10 CYS C 36 1555 1555 2.02 SSBOND 6 CYS C 12 CYS C 52 1555 1555 2.02 SSBOND 7 CYS D 10 CYS D 36 1555 1555 2.02 SSBOND 8 CYS D 12 CYS D 52 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000