PDB Short entry for 1PHH HEADER OXIDOREDUCTASE 04-NOV-87 1PHH TITLE CRYSTAL STRUCTURE OF P-HYDROXYBENZOATE HYDROXYLASE COMPLEXED WITH ITS TITLE 2 REACTION PRODUCT 3,4-DIHYDROXYBENZOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: P-HYDROXYBENZOATE HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.13.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.A.SCHREUDER,J.DRENTH REVDAT 6 14-FEB-24 1PHH 1 REMARK REVDAT 5 13-JUL-11 1PHH 1 VERSN REVDAT 4 24-FEB-09 1PHH 1 VERSN REVDAT 3 01-APR-03 1PHH 1 JRNL REVDAT 2 15-JAN-93 1PHH 2 CONECT REVDAT 1 16-APR-88 1PHH 0 JRNL AUTH H.A.SCHREUDER,J.M.VAN DER LAAN,W.G.HOL,J.DRENTH JRNL TITL CRYSTAL STRUCTURE OF P-HYDROXYBENZOATE HYDROXYLASE COMPLEXED JRNL TITL 2 WITH ITS REACTION PRODUCT 3,4-DIHYDROXYBENZOATE. JRNL REF J.MOL.BIOL. V. 199 637 1988 JRNL REFN ISSN 0022-2836 JRNL PMID 3351945 JRNL DOI 10.1016/0022-2836(88)90307-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.J.WEIJER,J.HOFSTEENGE,J.J.BEINTEMA,R.K.WIERENGA,J.DRENTH REMARK 1 TITL P-HYDROXYBENZOATE HYDROXYLASE FROM PSEUDOMONAS FLUORESCENS. REMARK 1 TITL 2 2. FITTING OF THE AMINO-ACID SEQUENCE TO THE TERTIARY REMARK 1 TITL 3 STRUCTURE REMARK 1 REF EUR.J.BIOCHEM. V. 133 109 1983 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.HOFSTEENGE,W.J.WEIJER,P.A.JEKEL,J.J.BEINTEMA REMARK 1 TITL P-HYDROXYBENZOATE HYDROXYLASE FROM PSEUDOMONAS FLUORESCENS. REMARK 1 TITL 2 1. COMPLETION OF THE ELUCIDATION OF THE PRIMARY STRUCTURE REMARK 1 REF EUR.J.BIOCHEM. V. 133 91 1983 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 3 REMARK 1 AUTH R.K.WIERENGA,J.DRENTH,G.E.SCHULZ REMARK 1 TITL COMPARISON OF THE THREE-DIMENSIONAL PROTEIN AND NUCLEOTIDE REMARK 1 TITL 2 STRUCTURE OF THE FAD-BINDING DOMAIN OF P-HYDROXYBENZOATE REMARK 1 TITL 3 HYDROXYLASE WITH THE FAD-AS WELL AS NADPH-BINDING DOMAINS OF REMARK 1 TITL 4 GLUTATHIONE REDUCTASE REMARK 1 REF J.MOL.BIOL. V. 167 725 1983 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.HOFSTEENGE,J.M.VEREIJKEN,W.J.WEIJER,J.J.BEINTEMA, REMARK 1 AUTH 2 R.K.WIERENGA,J.DRENTH REMARK 1 TITL PRIMARY AND TERTIARY STRUCTURE STUDIES OF P-HYDROXYBENZOATE REMARK 1 TITL 2 HYDROXYLASE FROM PSEUDOMONAS FLUORESCENS. ISOLATION AND REMARK 1 TITL 3 ALIGNMENT OF THE CNBR PEPTIDES. INTERACTIONS OF THE PROTEIN REMARK 1 TITL 4 WITH FLAVIN ADENINE DINUCLEOTIDE REMARK 1 REF EUR.J.BIOCHEM. V. 113 141 1980 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 5 REMARK 1 AUTH R.K.WIERENGA,R.J.DEJONG,K.H.KALK,W.G.J.HOL,J.DRENTH REMARK 1 TITL CRYSTAL STRUCTURE OF P-HYDROXYBENZOATE HYDROXYLASE REMARK 1 REF J.MOL.BIOL. V. 131 55 1979 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 6 REMARK 1 AUTH J.DRENTH,W.G.J.HOL,R.K.WIERENGA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY INVESTIGATION OF REMARK 1 TITL 2 P-HYDROBENZOATE HYDROXYLASE FROM PSEUDOMONAS FLUORESCENS REMARK 1 REF J.BIOL.CHEM. V. 250 5268 1975 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3125 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.050 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.95000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.15000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.95000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.15000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.45000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.95000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.15000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.45000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.95000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.15000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 146.30000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 88.90000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 164 OG SER A 168 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 1 O THR A 192 6565 1.96 REMARK 500 O LYS A 23 NH2 ARG A 57 3556 2.01 REMARK 500 OH TYR A 138 OG1 THR A 228 3656 2.08 REMARK 500 SD MET A 1 O THR A 192 6565 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 5 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 37 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 TYR A 38 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 38 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU A 48 CA - CB - CG ANGL. DEV. = 23.4 DEGREES REMARK 500 GLU A 49 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 GLU A 49 CB - CG - CD ANGL. DEV. = 17.1 DEGREES REMARK 500 GLU A 49 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 GLU A 58 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 GLY A 60 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 VAL A 61 C - N - CA ANGL. DEV. = 16.4 DEGREES REMARK 500 VAL A 61 N - CA - CB ANGL. DEV. = 20.5 DEGREES REMARK 500 ARG A 63 CD - NE - CZ ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 68 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 68 CA - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 84 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 85 CD - NE - CZ ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 87 N - CA - CB ANGL. DEV. = 13.5 DEGREES REMARK 500 ASP A 87 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 MET A 110 CG - SD - CE ANGL. DEV. = 10.4 DEGREES REMARK 500 GLU A 111 CA - CB - CG ANGL. DEV. = 28.9 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 128 O - C - N ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 136 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 VAL A 139 CA - CB - CG1 ANGL. DEV. = 9.8 DEGREES REMARK 500 THR A 140 CA - CB - CG2 ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 143 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 144 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 GLY A 145 C - N - CA ANGL. DEV. = 14.6 DEGREES REMARK 500 GLY A 145 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 GLU A 146 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 ASP A 153 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 CYS A 158 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 159 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 106 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 19 20.49 -69.71 REMARK 500 LEU A 20 -51.38 -122.89 REMARK 500 PRO A 36 6.92 -67.49 REMARK 500 ASP A 37 -63.80 -97.49 REMARK 500 ARG A 44 -97.74 -122.26 REMARK 500 GLU A 58 38.17 -73.01 REMARK 500 ALA A 59 -107.55 -171.94 REMARK 500 VAL A 61 75.65 -174.72 REMARK 500 ARG A 63 -82.97 -41.29 REMARK 500 ARG A 67 -73.24 -74.31 REMARK 500 ASP A 68 39.40 -91.32 REMARK 500 PHE A 79 87.27 -159.66 REMARK 500 ALA A 80 93.20 30.99 REMARK 500 ASP A 87 78.31 59.17 REMARK 500 TYR A 100 -64.19 -97.66 REMARK 500 GLU A 111 -72.06 -66.33 REMARK 500 GLN A 123 53.99 37.56 REMARK 500 ASP A 144 -89.58 -159.28 REMARK 500 GLU A 146 80.80 -49.86 REMARK 500 HIS A 162 45.96 -100.46 REMARK 500 SER A 168 34.65 -77.40 REMARK 500 PRO A 170 94.95 -35.28 REMARK 500 PHE A 183 157.36 179.84 REMARK 500 THR A 192 -39.26 174.45 REMARK 500 HIS A 197 -24.47 -28.64 REMARK 500 ARG A 214 -33.62 -139.51 REMARK 500 THR A 217 48.88 -156.61 REMARK 500 THR A 228 -0.70 57.56 REMARK 500 ALA A 249 19.32 -160.89 REMARK 500 ALA A 252 -81.25 -127.16 REMARK 500 GLU A 262 65.75 -35.09 REMARK 500 ILE A 265 -152.57 -157.04 REMARK 500 PRO A 267 145.45 15.27 REMARK 500 ASP A 286 -4.01 -46.55 REMARK 500 THR A 294 -9.36 -54.16 REMARK 500 LEU A 314 -72.13 -56.08 REMARK 500 TYR A 317 -74.38 -54.42 REMARK 500 SER A 329 -16.60 -49.05 REMARK 500 ARG A 341 -70.79 -51.20 REMARK 500 ASP A 355 -59.67 174.07 REMARK 500 THR A 356 138.56 -23.48 REMARK 500 ALA A 358 8.69 -56.75 REMARK 500 TYR A 390 -65.12 -93.42 REMARK 500 GLU A 391 143.77 165.68 REMARK 500 GLU A 392 -101.04 -41.26 REMARK 500 ILE A 393 160.11 75.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 33 0.13 SIDE CHAIN REMARK 500 ARG A 206 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DHB A 396 DBREF 1PHH A 1 394 UNP P00438 PHHY_PSEFL 1 394 SEQRES 1 A 394 MET LYS THR GLN VAL ALA ILE ILE GLY ALA GLY PRO SER SEQRES 2 A 394 GLY LEU LEU LEU GLY GLN LEU LEU HIS LYS ALA GLY ILE SEQRES 3 A 394 ASP ASN VAL ILE LEU GLU ARG GLN THR PRO ASP TYR VAL SEQRES 4 A 394 LEU GLY ARG ILE ARG ALA GLY VAL LEU GLU GLN GLY MET SEQRES 5 A 394 VAL ASP LEU LEU ARG GLU ALA GLY VAL ASP ARG ARG MET SEQRES 6 A 394 ALA ARG ASP GLY LEU VAL HIS GLU GLY VAL GLU ILE ALA SEQRES 7 A 394 PHE ALA GLY GLN ARG ARG ARG ILE ASP LEU LYS ARG LEU SEQRES 8 A 394 SER GLY GLY LYS THR VAL THR VAL TYR GLY GLN THR GLU SEQRES 9 A 394 VAL THR ARG ASP LEU MET GLU ALA ARG GLU ALA CYS GLY SEQRES 10 A 394 ALA THR THR VAL TYR GLN ALA ALA GLU VAL ARG LEU HIS SEQRES 11 A 394 ASP LEU GLN GLY GLU ARG PRO TYR VAL THR PHE GLU ARG SEQRES 12 A 394 ASP GLY GLU ARG LEU ARG LEU ASP CYS ASP TYR ILE ALA SEQRES 13 A 394 GLY CYS ASP GLY PHE HIS GLY ILE SER ARG GLN SER ILE SEQRES 14 A 394 PRO ALA GLU ARG LEU LYS VAL PHE GLU ARG VAL TYR PRO SEQRES 15 A 394 PHE GLY TRP LEU GLY LEU LEU ALA ASP THR PRO PRO VAL SEQRES 16 A 394 SER HIS GLU LEU ILE TYR ALA ASN HIS PRO ARG GLY PHE SEQRES 17 A 394 ALA LEU CYS SER GLN ARG SER ALA THR ARG SER ARG TYR SEQRES 18 A 394 TYR VAL GLN VAL PRO LEU THR GLU LYS VAL GLU ASP TRP SEQRES 19 A 394 SER ASP GLU ARG PHE TRP THR GLU LEU LYS ALA ARG LEU SEQRES 20 A 394 PRO ALA GLU VAL ALA GLU LYS LEU VAL THR GLY PRO SER SEQRES 21 A 394 LEU GLU LYS SER ILE ALA PRO LEU ARG SER PHE VAL VAL SEQRES 22 A 394 GLU PRO MET GLN HIS GLY ARG LEU PHE LEU ALA GLY ASP SEQRES 23 A 394 ALA ALA HIS ILE VAL PRO PRO THR GLY ALA LYS GLY LEU SEQRES 24 A 394 ASN LEU ALA ALA SER ASP VAL SER THR LEU TYR ARG LEU SEQRES 25 A 394 LEU LEU LYS ALA TYR ARG GLU GLY ARG GLY GLU LEU LEU SEQRES 26 A 394 GLU ARG TYR SER ALA ILE CYS LEU ARG ARG ILE TRP LYS SEQRES 27 A 394 ALA GLU ARG PHE SER TRP TRP MET THR SER VAL LEU HIS SEQRES 28 A 394 ARG PHE PRO ASP THR ASP ALA PHE SER GLN ARG ILE GLN SEQRES 29 A 394 GLN THR GLU LEU GLU TYR TYR LEU GLY SER GLU ALA GLY SEQRES 30 A 394 LEU ALA THR ILE ALA GLU ASN TYR VAL GLY LEU PRO TYR SEQRES 31 A 394 GLU GLU ILE GLU HET FAD A 395 53 HET DHB A 396 11 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM DHB 3,4-DIHYDROXYBENZOIC ACID FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 DHB C7 H6 O4 FORMUL 4 HOH *273(H2 O) HELIX 1 H1 PRO A 12 ALA A 24 1 13 HELIX 2 H2 TYR A 38 GLY A 41 1 4 HELIX 3 H3 VAL A 53 ARG A 57 1 5 HELIX 4 H4 ARG A 63 ASP A 68 1 6 HELIX 5 H5 LEU A 88 LEU A 91 1 4 HELIX 6 H6 GLN A 102 GLU A 114 1 13 HELIX 7 H7 ARG A 166 SER A 168 5 3 HELIX 8 H8 GLU A 237 ALA A 245 1 9 HELIX 9 H9 PRO A 248 LYS A 254 1TWO HELICAL TURNS 7 HELIX 10 H10 LEU A 299 ARG A 318 1 20 HELIX 11 10A GLU A 323 LEU A 325 5START HELIX H11 (HELIX 12) 3 HELIX 12 H11 TYR A 328 LEU A 350 1 23 HELIX 13 H12 SER A 360 TYR A 371 1 12 HELIX 14 H13 GLU A 375 VAL A 386 1 12 SHEET 1 A 6 THR A 120 VAL A 121 0 SHEET 2 A 6 ASN A 28 LEU A 31 1 O ILE A 30 N VAL A 121 SHEET 3 A 6 VAL A 5 ILE A 8 1 N ILE A 7 O VAL A 29 SHEET 4 A 6 TYR A 154 GLY A 157 1 O TYR A 154 N ALA A 6 SHEET 5 A 6 LEU A 281 LEU A 283 1 N PHE A 282 O ILE A 155 SHEET 6 A 6 GLN A 277 HIS A 278 -1 O HIS A 278 N LEU A 281 SHEET 1 B 7 ARG A 83 ARG A 85 0 SHEET 2 B 7 VAL A 75 PHE A 79 -1 O ILE A 77 N ARG A 84 SHEET 3 B 7 LEU A 199 HIS A 204 1 O LEU A 199 N GLU A 76 SHEET 4 B 7 GLY A 207 SER A 215 -1 N GLY A 207 O HIS A 204 SHEET 5 B 7 ARG A 218 VAL A 225 -1 O ARG A 218 N ARG A 214 SHEET 6 B 7 GLY A 184 ALA A 190 -1 N GLY A 184 O VAL A 225 SHEET 7 B 7 LEU A 261 LYS A 263 -1 N LEU A 261 O LEU A 189 SHEET 1 C 4 MET A 1 LYS A 2 0 SHEET 2 C 4 ARG A 147 ASP A 151 1 O ARG A 149 N MET A 1 SHEET 3 C 4 TYR A 138 GLU A 142 -1 N VAL A 139 O LEU A 150 SHEET 4 C 4 ALA A 125 HIS A 130 -1 N ALA A 125 O GLU A 142 SHEET 1 D 3 LYS A 175 VAL A 180 0 SHEET 2 D 3 ARG A 269 GLU A 274 -1 N GLU A 274 O LYS A 175 SHEET 3 D 3 HIS A 289 ILE A 290 -1 N ILE A 290 O PHE A 271 SHEET 1 E 3 VAL A 47 GLU A 49 0 SHEET 2 E 3 VAL A 97 VAL A 99 -1 N THR A 98 O LEU A 48 SHEET 3 E 3 LEU A 70 HIS A 72 -1 N LEU A 70 O VAL A 99 CISPEP 1 GLU A 274 PRO A 275 0 -1.68 SITE 1 AC1 26 ILE A 8 GLY A 9 GLY A 11 SER A 13 SITE 2 AC1 26 LEU A 31 GLU A 32 ARG A 33 ARG A 42 SITE 3 AC1 26 ARG A 44 ALA A 45 GLY A 46 VAL A 47 SITE 4 AC1 26 GLN A 102 CYS A 158 ASP A 159 ILE A 164 SITE 5 AC1 26 ASP A 286 ALA A 296 LYS A 297 GLY A 298 SITE 6 AC1 26 LEU A 299 ASN A 300 DHB A 396 HOH A 401 SITE 7 AC1 26 HOH A 441 HOH A 480 SITE 1 AC2 11 ARG A 44 TRP A 185 LEU A 199 TYR A 201 SITE 2 AC2 11 LEU A 210 SER A 212 ARG A 214 TYR A 222 SITE 3 AC2 11 PRO A 293 THR A 294 FAD A 395 CRYST1 71.900 146.300 88.900 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013908 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011249 0.00000