PDB Short entry for 1PJ5 HEADER OXIDOREDUCTASE 01-JUN-03 1PJ5 TITLE CRYSTAL STRUCTURE OF DIMETHYLGLYCINE OXIDASE OF TITLE 2 ARTHROBACTER GLOBIFORMIS IN COMPLEX WITH ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N,N-DIMETHYLGLYCINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.3.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER GLOBIFORMIS; SOURCE 3 ORGANISM_TAXID: 1665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PUC19 KEYWDS CHANNELLING, FAD BINDING, FOLATE BINDING, AMINE OXIDASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.LEYS,J.BASRAN,N.S.SCRUTTON REVDAT 2 24-FEB-09 1PJ5 1 VERSN REVDAT 1 07-OCT-03 1PJ5 0 JRNL AUTH D.LEYS,J.BASRAN,N.S.SCRUTTON JRNL TITL CHANNELLING AND FORMATION OF 'ACTIVE' FORMALDEHYDE JRNL TITL 2 IN DIMETHYLGLYCINE OXIDASE. JRNL REF EMBO J. V. 22 4038 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12912903 JRNL DOI 10.1093/EMBOJ/CDG395 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.08 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 114766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6074 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7086 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 364 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 1740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.572 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6507 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8866 ; 1.578 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 826 ; 5.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 1004 ;11.794 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 984 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4985 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3058 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1156 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 111 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4099 ; 0.971 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6560 ; 1.680 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2408 ; 2.773 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2306 ; 4.530 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PJ5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB019352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SYNCHROTRON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114767 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 % PEG 2000MME, 0.2 M MGCL2, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.69050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 113.34000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.69050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 113.34000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.69050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 113.34000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.69050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 113.34000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MOLECULE IS A TETRAMER (DIMER OF DIMERS) GENERATED REMARK 300 BY THE 222 POINT SYMMETRY OF THE C222 SPACEGROUP. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.38100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 226.68000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 71.38100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 120.66100 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 226.68000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 120.66100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2280 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2649 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2661 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2833 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3478 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3544 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3612 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3725 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 ASN A 135 CG OD1 ND2 REMARK 470 ARG A 183 CD NE CZ NH1 NH2 REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 GLU A 726 CG CD OE1 OE2 REMARK 470 ARG A 829 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 477 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 41 78.48 -166.99 REMARK 500 CYS A 202 50.58 -116.91 REMARK 500 ALA A 273 58.03 -95.72 REMARK 500 ALA A 359 60.13 65.09 REMARK 500 ALA A 499 -113.62 -136.46 REMARK 500 THR A 704 -65.20 -122.51 REMARK 500 LYS A 761 -7.61 77.38 REMARK 500 THR A 775 -102.09 -93.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3641 DISTANCE = 5.54 ANGSTROMS REMARK 525 HOH A3700 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A3705 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A3710 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A3753 DISTANCE = 7.80 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 412 O REMARK 620 2 HOH A2147 O 83.8 REMARK 620 3 HOH A2152 O 89.5 84.9 REMARK 620 4 HOH A2198 O 88.7 98.1 176.3 REMARK 620 5 HOH A2237 O 96.3 172.0 87.1 89.8 REMARK 620 6 ASP A 257 OD2 169.6 88.1 96.3 86.0 92.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 2145 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PJ6 RELATED DB: PDB REMARK 900 RELATED ID: 1PJ7 RELATED DB: PDB DBREF 1PJ5 A 1 830 UNP Q9AGP8 Q9AGP8_ARTGO 1 830 SEQRES 1 A 830 MET ALA SER THR PRO ARG ILE VAL ILE ILE GLY ALA GLY SEQRES 2 A 830 ILE VAL GLY THR ASN LEU ALA ASP GLU LEU VAL THR ARG SEQRES 3 A 830 GLY TRP ASN ASN ILE THR VAL LEU ASP GLN GLY PRO LEU SEQRES 4 A 830 ASN MET PRO GLY GLY SER THR SER HIS ALA PRO GLY LEU SEQRES 5 A 830 VAL PHE GLN THR ASN PRO SER LYS THR MET ALA SER PHE SEQRES 6 A 830 ALA LYS TYR THR VAL GLU LYS LEU LEU SER LEU THR GLU SEQRES 7 A 830 ASP GLY VAL SER CYS PHE ASN GLN VAL GLY GLY LEU GLU SEQRES 8 A 830 VAL ALA THR THR GLU THR ARG LEU ALA ASP LEU LYS ARG SEQRES 9 A 830 LYS LEU GLY TYR ALA ALA ALA TRP GLY ILE GLU GLY ARG SEQRES 10 A 830 LEU LEU SER PRO ALA GLU CYS GLN GLU LEU TYR PRO LEU SEQRES 11 A 830 LEU ASP GLY GLU ASN ILE LEU GLY GLY LEU HIS VAL PRO SEQRES 12 A 830 SER ASP GLY LEU ALA SER ALA ALA ARG ALA VAL GLN LEU SEQRES 13 A 830 LEU ILE LYS ARG THR GLU SER ALA GLY VAL THR TYR ARG SEQRES 14 A 830 GLY SER THR THR VAL THR GLY ILE GLU GLN SER GLY GLY SEQRES 15 A 830 ARG VAL THR GLY VAL GLN THR ALA ASP GLY VAL ILE PRO SEQRES 16 A 830 ALA ASP ILE VAL VAL SER CYS ALA GLY PHE TRP GLY ALA SEQRES 17 A 830 LYS ILE GLY ALA MET ILE GLY MET ALA VAL PRO LEU LEU SEQRES 18 A 830 PRO LEU ALA HIS GLN TYR VAL LYS THR THR PRO VAL PRO SEQRES 19 A 830 ALA GLN GLN GLY ARG ASN ASP GLN PRO ASN GLY ALA ARG SEQRES 20 A 830 LEU PRO ILE LEU ARG HIS GLN ASP GLN ASP LEU TYR TYR SEQRES 21 A 830 ARG GLU HIS GLY ASP ARG TYR GLY ILE GLY SER TYR ALA SEQRES 22 A 830 HIS ARG PRO MET PRO VAL ASP VAL ASP THR LEU GLY ALA SEQRES 23 A 830 TYR ALA PRO GLU THR VAL SER GLU HIS HIS MET PRO SER SEQRES 24 A 830 ARG LEU ASP PHE THR LEU GLU ASP PHE LEU PRO ALA TRP SEQRES 25 A 830 GLU ALA THR LYS GLN LEU LEU PRO ALA LEU ALA ASP SER SEQRES 26 A 830 GLU ILE GLU ASP GLY PHE ASN GLY ILE PHE SER PHE THR SEQRES 27 A 830 PRO ASP GLY GLY PRO LEU LEU GLY GLU SER LYS GLU LEU SEQRES 28 A 830 ASP GLY PHE TYR VAL ALA GLU ALA VAL TRP VAL THR HIS SEQRES 29 A 830 SER ALA GLY VAL ALA LYS ALA MET ALA GLU LEU LEU THR SEQRES 30 A 830 THR GLY ARG SER GLU THR ASP LEU GLY GLU CYS ASP ILE SEQRES 31 A 830 THR ARG PHE GLU ASP VAL GLN LEU THR PRO GLU TYR VAL SEQRES 32 A 830 SER GLU THR SER GLN GLN ASN PHE VAL GLU ILE TYR ASP SEQRES 33 A 830 VAL LEU HIS PRO LEU GLN PRO ARG LEU SER PRO ARG ASN SEQRES 34 A 830 LEU ARG VAL SER PRO PHE HIS ALA ARG HIS LYS GLU LEU SEQRES 35 A 830 GLY ALA PHE PHE LEU GLU ALA GLY GLY TRP GLU ARG PRO SEQRES 36 A 830 TYR TRP PHE GLU ALA ASN ALA ALA LEU LEU LYS GLU MET SEQRES 37 A 830 PRO ALA GLU TRP LEU PRO PRO ALA ARG ASP ALA TRP SER SEQRES 38 A 830 GLY MET PHE SER SER PRO ILE ALA ALA ALA GLU ALA TRP SEQRES 39 A 830 LYS THR ARG THR ALA VAL ALA MET TYR ASP MET THR PRO SEQRES 40 A 830 LEU LYS ARG LEU GLU VAL SER GLY PRO GLY ALA LEU LYS SEQRES 41 A 830 LEU LEU GLN GLU LEU THR THR ALA ASP LEU ALA LYS LYS SEQRES 42 A 830 PRO GLY ALA VAL THR TYR THR LEU LEU LEU ASP HIS ALA SEQRES 43 A 830 GLY GLY VAL ARG SER ASP ILE THR VAL ALA ARG LEU SER SEQRES 44 A 830 GLU ASP THR PHE GLN LEU GLY ALA ASN GLY ASN ILE ASP SEQRES 45 A 830 THR ALA TYR PHE GLU ARG ALA ALA ARG HIS GLN THR GLN SEQRES 46 A 830 SER GLY SER ALA THR ASP TRP VAL GLN VAL ARG ASP THR SEQRES 47 A 830 THR GLY GLY THR CYS CYS ILE GLY LEU TRP GLY PRO LEU SEQRES 48 A 830 ALA ARG ASP LEU VAL SER LYS VAL SER ASP ASP ASP PHE SEQRES 49 A 830 THR ASN ASP GLY LEU LYS TYR PHE ARG ALA LYS ASN VAL SEQRES 50 A 830 VAL ILE GLY GLY ILE PRO VAL THR ALA MET ARG LEU SER SEQRES 51 A 830 TYR VAL GLY GLU LEU GLY TRP GLU LEU TYR THR SER ALA SEQRES 52 A 830 ASP ASN GLY GLN ARG LEU TRP ASP ALA LEU TRP GLN ALA SEQRES 53 A 830 GLY GLN PRO PHE GLY VAL ILE ALA ALA GLY ARG ALA ALA SEQRES 54 A 830 PHE SER SER LEU ARG LEU GLU LYS GLY TYR ARG SER TRP SEQRES 55 A 830 GLY THR ASP MET THR THR GLU HIS ASP PRO PHE GLU ALA SEQRES 56 A 830 GLY LEU GLY PHE ALA VAL LYS MET ALA LYS GLU SER PHE SEQRES 57 A 830 ILE GLY LYS GLY ALA LEU GLU GLY ARG THR GLU GLU ALA SEQRES 58 A 830 SER ALA ARG ARG LEU ARG CYS LEU THR ILE ASP ASP GLY SEQRES 59 A 830 ARG SER ILE VAL LEU GLY LYS GLU PRO VAL PHE TYR LYS SEQRES 60 A 830 GLU GLN ALA VAL GLY TYR VAL THR SER ALA ALA TYR GLY SEQRES 61 A 830 TYR THR VAL ALA LYS PRO ILE ALA TYR SER TYR LEU PRO SEQRES 62 A 830 GLY THR VAL SER VAL GLY ASP SER VAL ASP ILE GLU TYR SEQRES 63 A 830 PHE GLY ARG ARG ILE THR ALA THR VAL THR GLU ASP PRO SEQRES 64 A 830 LEU TYR ASP PRO LYS MET THR ARG LEU ARG GLY HET NA A2001 1 HET ACT A2145 4 HET FAD A 902 53 HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 NA NA 1+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 HOH *1740(H2 O) HELIX 1 1 GLY A 13 ARG A 26 1 14 HELIX 2 2 GLY A 44 HIS A 48 5 5 HELIX 3 3 SER A 59 LEU A 76 1 18 HELIX 4 4 THR A 95 GLY A 113 1 19 HELIX 5 5 SER A 120 TYR A 128 1 9 HELIX 6 6 ASP A 132 ILE A 136 5 5 HELIX 7 7 SER A 149 ALA A 164 1 16 HELIX 8 8 ALA A 203 PHE A 205 5 3 HELIX 9 9 TRP A 206 MET A 213 1 8 HELIX 10 10 VAL A 233 GLN A 237 5 5 HELIX 11 11 GLN A 254 GLN A 256 5 3 HELIX 12 12 ASP A 280 LEU A 284 5 5 HELIX 13 13 ALA A 288 VAL A 292 5 5 HELIX 14 14 THR A 304 LEU A 319 1 16 HELIX 15 15 PRO A 320 SER A 325 5 6 HELIX 16 16 TRP A 361 THR A 363 5 3 HELIX 17 17 HIS A 364 GLY A 379 1 16 HELIX 18 18 ASP A 389 PHE A 393 5 5 HELIX 19 19 GLU A 394 LEU A 398 5 5 HELIX 20 20 THR A 399 GLU A 413 1 15 HELIX 21 21 PHE A 435 LEU A 442 1 8 HELIX 22 22 ALA A 460 MET A 468 5 9 HELIX 23 23 PRO A 469 LEU A 473 5 5 HELIX 24 24 ASP A 478 MET A 483 1 6 HELIX 25 25 PRO A 487 ALA A 499 1 13 HELIX 26 26 GLY A 517 THR A 526 1 10 HELIX 27 27 GLY A 569 GLY A 587 1 19 HELIX 28 28 LEU A 611 SER A 617 1 7 HELIX 29 29 ALA A 663 GLN A 678 1 16 HELIX 30 30 PRO A 679 GLY A 681 5 3 HELIX 31 31 GLY A 686 LYS A 697 1 12 HELIX 32 32 LEU A 717 VAL A 721 5 5 HELIX 33 33 GLY A 730 GLU A 735 1 6 SHEET 1 A 6 THR A 167 ARG A 169 0 SHEET 2 A 6 ILE A 31 LEU A 34 1 N VAL A 33 O THR A 167 SHEET 3 A 6 ILE A 7 ILE A 10 1 N ILE A 9 O LEU A 34 SHEET 4 A 6 ILE A 198 SER A 201 1 O VAL A 200 N VAL A 8 SHEET 5 A 6 PHE A 354 GLU A 358 1 O TYR A 355 N SER A 201 SHEET 6 A 6 LEU A 344 GLU A 347 -1 N LEU A 344 O GLU A 358 SHEET 1 B 3 LEU A 52 VAL A 53 0 SHEET 2 B 3 GLY A 146 ALA A 148 -1 O GLY A 146 N VAL A 53 SHEET 3 B 3 PHE A 84 ASN A 85 -1 N ASN A 85 O LEU A 147 SHEET 1 C 2 THR A 77 GLU A 78 0 SHEET 2 C 2 VAL A 81 SER A 82 -1 O VAL A 81 N GLU A 78 SHEET 1 D 9 ARG A 117 LEU A 119 0 SHEET 2 D 9 GLY A 138 VAL A 142 -1 O HIS A 141 N ARG A 117 SHEET 3 D 9 GLY A 89 ALA A 93 -1 N GLY A 89 O VAL A 142 SHEET 4 D 9 ILE A 250 HIS A 253 1 O ARG A 252 N LEU A 90 SHEET 5 D 9 LEU A 258 HIS A 263 -1 O LEU A 258 N HIS A 253 SHEET 6 D 9 ARG A 266 SER A 271 -1 O GLY A 268 N ARG A 261 SHEET 7 D 9 LEU A 221 THR A 230 -1 N VAL A 228 O ILE A 269 SHEET 8 D 9 ILE A 327 PHE A 337 -1 O ASP A 329 N LYS A 229 SHEET 9 D 9 ARG A 300 LEU A 301 -1 N LEU A 301 O ASN A 332 SHEET 1 E 3 VAL A 174 SER A 180 0 SHEET 2 E 3 ARG A 183 THR A 189 -1 O THR A 185 N GLU A 178 SHEET 3 E 3 GLY A 192 PRO A 195 -1 O ILE A 194 N VAL A 187 SHEET 1 F 2 ALA A 444 ALA A 449 0 SHEET 2 F 2 TRP A 452 PHE A 458 -1 O TYR A 456 N PHE A 445 SHEET 1 G 6 ALA A 634 ILE A 639 0 SHEET 2 G 6 ILE A 642 MET A 647 -1 O VAL A 644 N VAL A 637 SHEET 3 G 6 GLY A 656 SER A 662 -1 O TYR A 660 N THR A 645 SHEET 4 G 6 THR A 602 TRP A 608 -1 N LEU A 607 O TRP A 657 SHEET 5 G 6 ALA A 501 ASP A 504 -1 N TYR A 503 O GLY A 606 SHEET 6 G 6 ILE A 683 ALA A 685 1 O ILE A 683 N MET A 502 SHEET 1 H 5 VAL A 537 LEU A 543 0 SHEET 2 H 5 VAL A 549 SER A 559 -1 O ILE A 553 N THR A 540 SHEET 3 H 5 THR A 562 GLY A 566 -1 O GLN A 564 N ALA A 556 SHEET 4 H 5 ARG A 510 SER A 514 -1 N LEU A 511 O LEU A 565 SHEET 5 H 5 GLN A 594 ASP A 597 -1 O ARG A 596 N GLU A 512 SHEET 1 I 7 GLN A 769 TYR A 773 0 SHEET 2 I 7 PRO A 763 TYR A 766 -1 N VAL A 764 O VAL A 771 SHEET 3 I 7 SER A 801 TYR A 806 -1 O ASP A 803 N PHE A 765 SHEET 4 I 7 ARG A 809 THR A 816 -1 O ALA A 813 N VAL A 802 SHEET 5 I 7 ARG A 744 ILE A 751 -1 N CYS A 748 O THR A 816 SHEET 6 I 7 LYS A 785 PRO A 793 -1 O SER A 790 N ARG A 747 SHEET 7 I 7 ALA A 777 GLY A 780 -1 N ALA A 778 O ILE A 787 LINK NE2 HIS A 48 C8M FAD A 902 1555 1555 1.70 LINK NA NA A2001 O VAL A 412 1555 1555 2.11 LINK NA NA A2001 O HOH A2147 1555 1555 2.18 LINK NA NA A2001 O HOH A2152 1555 1555 2.10 LINK NA NA A2001 O HOH A2198 1555 1555 2.05 LINK NA NA A2001 O HOH A2237 1555 1555 2.09 LINK NA NA A2001 OD2 ASP A 257 1555 1555 2.06 CISPEP 1 GLN A 242 PRO A 243 0 -3.65 CISPEP 2 SER A 426 PRO A 427 0 -3.13 CISPEP 3 ASP A 818 PRO A 819 0 -3.01 SITE 1 AC1 6 ASP A 257 VAL A 412 HOH A2147 HOH A2152 SITE 2 AC1 6 HOH A2198 HOH A2237 SITE 1 AC2 7 PHE A 54 ARG A 252 TYR A 272 TRP A 361 SITE 2 AC2 7 TYR A 415 FAD A 902 HOH A2313 SITE 1 AC3 41 GLY A 11 GLY A 13 ILE A 14 VAL A 15 SITE 2 AC3 41 ASP A 35 GLN A 36 PRO A 42 GLY A 44 SITE 3 AC3 41 SER A 45 THR A 46 HIS A 48 ALA A 49 SITE 4 AC3 41 PRO A 50 GLY A 51 LEU A 52 THR A 172 SITE 5 AC3 41 THR A 173 VAL A 174 CYS A 202 ALA A 203 SITE 6 AC3 41 GLY A 204 TRP A 206 ILE A 210 HIS A 225 SITE 7 AC3 41 TYR A 259 GLY A 333 ILE A 334 PHE A 335 SITE 8 AC3 41 VAL A 360 TRP A 361 VAL A 362 THR A 363 SITE 9 AC3 41 ACT A2145 HOH A2153 HOH A2157 HOH A2170 SITE 10 AC3 41 HOH A2194 HOH A2203 HOH A2291 HOH A2399 SITE 11 AC3 41 HOH A2404 CRYST1 71.381 226.680 120.661 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014009 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008288 0.00000