PDB Short entry for 1PJZ HEADER TRANSFERASE 04-JUN-03 1PJZ TITLE SOLUTION STRUCTURE OF THIOPURINE METHYLTRANSFERASE FROM PSEUDOMONAS TITLE 2 SYRINGAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOPURINE S-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THIOPURINE METHYLTRANSFERASE, TELLURITE-RESISTANCE COMPND 5 DETERMINANT, TEL-R DETERMINANT; COMPND 6 EC: 2.1.1.67; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. PISI; SOURCE 3 ORGANISM_TAXID: 59510; SOURCE 4 STRAIN: PV. PISI; SOURCE 5 GENE: TPM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: (DE3)BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS METHYLTRANSFERASE, POLYMORPHISM, S-ADENOSYLMETHIONINE, DRUG KEYWDS 2 METABOLISM, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.H.SCHEUERMANN,E.LOLIS,M.E.HODSDON REVDAT 3 23-FEB-22 1PJZ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1PJZ 1 VERSN REVDAT 1 14-OCT-03 1PJZ 0 JRNL AUTH T.H.SCHEUERMANN,E.LOLIS,M.E.HODSDON JRNL TITL TERTIARY STRUCTURE OF THIOPURINE METHYLTRANSFERASE FROM JRNL TITL 2 PSEUDOMONAS SYRINGAE, A BACTERIAL ORTHOLOGUE OF A JRNL TITL 3 POLYMORPHIC, DRUG-METABOLIZING ENZYME JRNL REF J.MOL.BIOL. V. 333 573 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 14556746 JRNL DOI 10.1016/J.JMB.2003.08.039 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1, CYANA 1.05 REMARK 3 AUTHORS : VARINA, INC. (VNMR), GUENTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 5000 MD STEPS AT HIGH TEMP, 35000 STEPS REMARK 3 (COOLING), 10000 CONJUGATE GRADIENT MINIMZATION STEPS REMARK 4 REMARK 4 1PJZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019378. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM POTASSIUM PHOSPHATE, 150 REMARK 210 MM NACL, 0.05% NAN3, 1 UM REMARK 210 LUPEPTIN, 1 UM PEPSTATIN, 1 UM REMARK 210 PMSF, 1.5 MM PROTEIN, UNIFORM REMARK 210 (RANDOM) LABELING WITH 13C, 15N REMARK 210 AT KNOWN LABELING REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_13C/15N-SEPARATED_NOESY; REMARK 210 3D_15N-SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW 2.1, NMRPIPE, SPARKY REMARK 210 3.98, NMRVIEW 5.0.4, CYANA 1.05, REMARK 210 TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 12 H LEU A 16 1.39 REMARK 500 O GLU A 49 H SER A 51 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 6 95.28 34.32 REMARK 500 1 GLN A 11 -74.07 -73.30 REMARK 500 1 ASN A 17 47.82 70.99 REMARK 500 1 VAL A 18 167.81 -48.30 REMARK 500 1 LEU A 28 38.76 30.83 REMARK 500 1 LYS A 31 -79.02 -118.25 REMARK 500 1 SER A 32 -54.60 164.53 REMARK 500 1 LEU A 50 64.60 -63.04 REMARK 500 1 GLU A 64 151.86 75.64 REMARK 500 1 GLN A 65 -49.10 161.89 REMARK 500 1 GLU A 83 49.98 -100.55 REMARK 500 1 PHE A 90 51.41 176.20 REMARK 500 1 ALA A 91 44.17 179.16 REMARK 500 1 THR A 93 82.75 44.62 REMARK 500 1 HIS A 99 -82.32 58.53 REMARK 500 1 ALA A 101 -104.33 148.42 REMARK 500 1 ALA A 107 104.32 -41.62 REMARK 500 1 ALA A 108 -48.29 -130.68 REMARK 500 1 PRO A 113 -168.03 -75.00 REMARK 500 1 PRO A 129 -159.37 -75.05 REMARK 500 1 GLU A 140 -78.81 -127.64 REMARK 500 1 TYR A 141 -85.06 -27.92 REMARK 500 1 ASP A 142 137.75 -27.02 REMARK 500 1 GLN A 143 -31.00 174.56 REMARK 500 1 LEU A 145 -31.48 -179.89 REMARK 500 1 SER A 152 47.44 32.62 REMARK 500 1 VAL A 153 121.49 -35.20 REMARK 500 1 MET A 162 6.26 -57.65 REMARK 500 1 ASN A 165 -21.91 151.31 REMARK 500 1 THR A 176 74.36 -115.40 REMARK 500 1 ARG A 190 100.47 148.47 REMARK 500 2 SER A 3 -79.91 64.61 REMARK 500 2 ASN A 6 92.36 34.07 REMARK 500 2 GLN A 11 -81.66 -73.27 REMARK 500 2 ASN A 17 36.74 70.60 REMARK 500 2 VAL A 19 144.46 -34.87 REMARK 500 2 LEU A 28 52.99 22.48 REMARK 500 2 LYS A 31 110.69 87.97 REMARK 500 2 GLU A 64 151.40 69.91 REMARK 500 2 GLN A 65 -49.57 159.90 REMARK 500 2 GLU A 83 53.97 -103.94 REMARK 500 2 PHE A 90 52.11 165.09 REMARK 500 2 ALA A 91 -41.35 -145.33 REMARK 500 2 HIS A 99 -82.08 57.90 REMARK 500 2 ALA A 101 -108.76 146.58 REMARK 500 2 ALA A 107 99.94 -52.86 REMARK 500 2 ALA A 108 -52.70 -132.89 REMARK 500 2 PRO A 129 -167.18 -74.97 REMARK 500 2 GLU A 140 -94.21 -123.38 REMARK 500 2 TYR A 141 -81.17 -22.25 REMARK 500 REMARK 500 THIS ENTRY HAS 673 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 17 N-TERMINAL RESIDUES WERE DELETED FROM THE SEQUENCE. DBREF 1PJZ A 1 201 UNP O86262 TPMT_PSESJ 18 218 SEQADV 1PJZ GLY A -1 UNP O86262 CLONING ARTIFACT SEQADV 1PJZ SER A 0 UNP O86262 CLONING ARTIFACT SEQRES 1 A 203 GLY SER HIS GLN SER GLU VAL ASN LYS ASP LEU GLN GLN SEQRES 2 A 203 TYR TRP SER SER LEU ASN VAL VAL PRO GLY ALA ARG VAL SEQRES 3 A 203 LEU VAL PRO LEU CYS GLY LYS SER GLN ASP MET SER TRP SEQRES 4 A 203 LEU SER GLY GLN GLY TYR HIS VAL VAL GLY ALA GLU LEU SEQRES 5 A 203 SER GLU ALA ALA VAL GLU ARG TYR PHE THR GLU ARG GLY SEQRES 6 A 203 GLU GLN PRO HIS ILE THR SER GLN GLY ASP PHE LYS VAL SEQRES 7 A 203 TYR ALA ALA PRO GLY ILE GLU ILE TRP CYS GLY ASP PHE SEQRES 8 A 203 PHE ALA LEU THR ALA ARG ASP ILE GLY HIS CYS ALA ALA SEQRES 9 A 203 PHE TYR ASP ARG ALA ALA MET ILE ALA LEU PRO ALA ASP SEQRES 10 A 203 MET ARG GLU ARG TYR VAL GLN HIS LEU GLU ALA LEU MET SEQRES 11 A 203 PRO GLN ALA CYS SER GLY LEU LEU ILE THR LEU GLU TYR SEQRES 12 A 203 ASP GLN ALA LEU LEU GLU GLY PRO PRO PHE SER VAL PRO SEQRES 13 A 203 GLN THR TRP LEU HIS ARG VAL MET SER GLY ASN TRP GLU SEQRES 14 A 203 VAL THR LYS VAL GLY GLY GLN ASP THR LEU HIS SER SER SEQRES 15 A 203 ALA ARG GLY LEU LYS ALA GLY LEU GLU ARG MET ASP GLU SEQRES 16 A 203 HIS VAL TYR VAL LEU GLU ARG VAL HELIX 1 1 ASN A 6 ASN A 17 1 12 HELIX 2 2 SER A 32 GLY A 42 1 11 HELIX 3 3 SER A 51 GLY A 63 1 13 HELIX 4 4 THR A 93 HIS A 99 1 7 HELIX 5 5 ALA A 108 LEU A 112 5 5 HELIX 6 6 PRO A 113 MET A 128 1 16 HELIX 7 7 PRO A 154 VAL A 161 1 8 HELIX 8 8 SER A 180 GLY A 187 1 8 SHEET 1 A 9 HIS A 67 GLN A 71 0 SHEET 2 A 9 PHE A 74 ALA A 78 -1 O PHE A 74 N GLN A 71 SHEET 3 A 9 GLU A 83 GLY A 87 -1 O CYS A 86 N TYR A 77 SHEET 4 A 9 HIS A 44 LEU A 50 1 O GLU A 49 N GLY A 87 SHEET 5 A 9 ARG A 23 VAL A 26 1 N VAL A 24 O VAL A 46 SHEET 6 A 9 CYS A 100 ARG A 106 1 O CYS A 100 N ARG A 23 SHEET 7 A 9 ALA A 131 LEU A 139 1 O LEU A 135 N ASP A 105 SHEET 8 A 9 GLU A 193 ARG A 200 -1 O TYR A 196 N LEU A 136 SHEET 9 A 9 TRP A 166 GLY A 173 -1 N VAL A 171 O VAL A 195 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000