PDB Short entry for 1PKN HEADER PHOSPHOTRANSFERASE 25-MAR-94 1PKN TITLE STRUCTURE OF RABBIT MUSCLE PYRUVATE KINASE COMPLEXED WITH MN2+, K+, TITLE 2 AND PYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.40; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986 KEYWDS PHOSPHOTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.M.LARSEN,L.T.LAUGHLIN,H.M.HOLDEN,I.RAYMENT,G.H.REED REVDAT 3 15-NOV-23 1PKN 1 REMARK SEQADV LINK ATOM REVDAT 2 24-FEB-09 1PKN 1 VERSN REVDAT 1 26-JAN-95 1PKN 0 JRNL AUTH T.M.LARSEN,L.T.LAUGHLIN,H.M.HOLDEN,I.RAYMENT,G.H.REED JRNL TITL STRUCTURE OF RABBIT MUSCLE PYRUVATE KINASE COMPLEXED WITH JRNL TITL 2 MN2+, K+, AND PYRUVATE. JRNL REF BIOCHEMISTRY V. 33 6301 1994 JRNL REFN ISSN 0006-2960 JRNL PMID 8193145 JRNL DOI 10.1021/BI00186A033 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.011 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.800 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 PHE A 11 REMARK 465 GLY A 127 REMARK 465 THR A 128 REMARK 465 ALA A 129 REMARK 465 GLU A 130 REMARK 465 VAL A 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 181 OE1 GLU A 197 1.98 REMARK 500 O LYS A 504 O VAL A 529 1.98 REMARK 500 OD1 ASN A 74 OG SER A 76 2.14 REMARK 500 NZ LYS A 134 CD1 LEU A 139 2.17 REMARK 500 OD1 ASP A 237 NH1 ARG A 460 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 81 CD GLU A 81 OE2 0.066 REMARK 500 GLU A 85 CD GLU A 85 OE1 0.079 REMARK 500 GLU A 95 CD GLU A 95 OE1 0.082 REMARK 500 GLU A 222 CD GLU A 222 OE1 0.069 REMARK 500 GLU A 259 CD GLU A 259 OE1 0.093 REMARK 500 GLU A 284 CD GLU A 284 OE1 0.066 REMARK 500 GLU A 331 CD GLU A 331 OE1 0.091 REMARK 500 GLU A 372 CD GLU A 372 OE1 0.077 REMARK 500 GLU A 432 CD GLU A 432 OE1 0.096 REMARK 500 GLU A 479 CD GLU A 479 OE1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 12 N - CA - CB ANGL. DEV. = 15.2 DEGREES REMARK 500 ILE A 12 CA - C - N ANGL. DEV. = -14.9 DEGREES REMARK 500 ILE A 12 O - C - N ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 THR A 24 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP A 33 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 35 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 35 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 SER A 66 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 MET A 73 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 HIS A 77 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 HIS A 80 N - CA - CB ANGL. DEV. = 14.4 DEGREES REMARK 500 GLU A 81 N - CA - CB ANGL. DEV. = 14.8 DEGREES REMARK 500 HIS A 83 CA - CB - CG ANGL. DEV. = -13.1 DEGREES REMARK 500 PHE A 97 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 THR A 113 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 ARG A 119 CD - NE - CZ ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 MET A 148 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 TRP A 157 CA - CB - CG ANGL. DEV. = 12.0 DEGREES REMARK 500 TRP A 157 CE2 - CD2 - CG ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 176 CB - CG - OD1 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP A 176 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 VAL A 236 CA - CB - CG1 ANGL. DEV. = -14.1 DEGREES REMARK 500 ASP A 237 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET A 238 N - CA - CB ANGL. DEV. = -12.9 DEGREES REMARK 500 VAL A 239 CA - CB - CG2 ANGL. DEV. = -11.8 DEGREES REMARK 500 PHE A 240 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ALA A 241 N - CA - CB ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 249 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 249 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 GLU A 259 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 277 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 280 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ALA A 285 CB - CA - C ANGL. DEV. = 9.4 DEGREES REMARK 500 SER A 286 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP A 287 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 287 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 293 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU A 296 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 GLU A 303 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 ILE A 312 CA - CB - CG2 ANGL. DEV. = -12.9 DEGREES REMARK 500 CYS A 316 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 97 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 98 -5.48 -56.73 REMARK 500 LEU A 103 33.10 -140.90 REMARK 500 THR A 120 -176.87 -61.18 REMARK 500 ALA A 146 -30.64 -159.69 REMARK 500 CYS A 151 76.18 -111.27 REMARK 500 ASN A 162 46.99 -104.87 REMARK 500 ASP A 176 72.48 57.85 REMARK 500 LYS A 185 -37.74 -136.10 REMARK 500 LYS A 205 62.40 70.50 REMARK 500 LEU A 210 67.10 -108.24 REMARK 500 PHE A 243 82.73 55.22 REMARK 500 GLU A 259 -42.15 -27.71 REMARK 500 THR A 327 111.92 68.20 REMARK 500 LEU A 330 48.17 -160.39 REMARK 500 SER A 332 -34.34 -36.98 REMARK 500 ALA A 365 -71.08 -103.87 REMARK 500 PHE A 389 73.92 -104.25 REMARK 500 GLU A 432 -56.83 -139.51 REMARK 500 ARG A 444 62.82 32.41 REMARK 500 LYS A 503 -159.45 -82.45 REMARK 500 THR A 521 90.07 -69.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 532 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 74 OD1 REMARK 620 2 SER A 76 OG 40.9 REMARK 620 3 ASP A 112 OD1 99.0 139.8 REMARK 620 4 THR A 113 O 135.9 126.1 76.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 534 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 271 OE2 REMARK 620 2 ASP A 295 OD2 103.6 REMARK 620 3 PYR A 533 OXT 103.3 72.7 REMARK 620 4 PYR A 533 O3 82.1 142.2 69.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 532 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR A 533 DBREF 1PKN A 1 530 UNP P11974 KPYM_RABIT 1 530 SEQADV 1PKN ALA A 149 UNP P11974 GLU 149 CONFLICT SEQADV 1PKN ALA A 150 UNP P11974 LYS 150 CONFLICT SEQADV 1PKN GLU A 168 UNP P11974 ASP 168 CONFLICT SEQADV 1PKN ASP A 233 UNP P11974 GLU 233 CONFLICT SEQADV 1PKN GLU A 234 UNP P11974 GLN 234 CONFLICT SEQADV 1PKN ALA A 499 UNP P11974 ARG 499 CONFLICT SEQRES 1 A 530 SER LYS SER HIS SER GLU ALA GLY SER ALA PHE ILE GLN SEQRES 2 A 530 THR GLN GLN LEU HIS ALA ALA MET ALA ASP THR PHE LEU SEQRES 3 A 530 GLU HIS MET CYS ARG LEU ASP ILE ASP SER ALA PRO ILE SEQRES 4 A 530 THR ALA ARG ASN THR GLY ILE ILE CYS THR ILE GLY PRO SEQRES 5 A 530 ALA SER ARG SER VAL GLU THR LEU LYS GLU MET ILE LYS SEQRES 6 A 530 SER GLY MET ASN VAL ALA ARG MET ASN PHE SER HIS GLY SEQRES 7 A 530 THR HIS GLU TYR HIS ALA GLU THR ILE LYS ASN VAL ARG SEQRES 8 A 530 THR ALA THR GLU SER PHE ALA SER ASP PRO ILE LEU TYR SEQRES 9 A 530 ARG PRO VAL ALA VAL ALA LEU ASP THR LYS GLY PRO GLU SEQRES 10 A 530 ILE ARG THR GLY LEU ILE LYS GLY SER GLY THR ALA GLU SEQRES 11 A 530 VAL GLU LEU LYS LYS GLY ALA THR LEU LYS ILE THR LEU SEQRES 12 A 530 ASP ASN ALA TYR MET ALA ALA CYS ASP GLU ASN ILE LEU SEQRES 13 A 530 TRP LEU ASP TYR LYS ASN ILE CYS LYS VAL VAL GLU VAL SEQRES 14 A 530 GLY SER LYS VAL TYR VAL ASP ASP GLY LEU ILE SER LEU SEQRES 15 A 530 GLN VAL LYS GLN LYS GLY PRO ASP PHE LEU VAL THR GLU SEQRES 16 A 530 VAL GLU ASN GLY GLY PHE LEU GLY SER LYS LYS GLY VAL SEQRES 17 A 530 ASN LEU PRO GLY ALA ALA VAL ASP LEU PRO ALA VAL SER SEQRES 18 A 530 GLU LYS ASP ILE GLN ASP LEU LYS PHE GLY VAL ASP GLU SEQRES 19 A 530 ASP VAL ASP MET VAL PHE ALA SER PHE ILE ARG LYS ALA SEQRES 20 A 530 ALA ASP VAL HIS GLU VAL ARG LYS ILE LEU GLY GLU LYS SEQRES 21 A 530 GLY LYS ASN ILE LYS ILE ILE SER LYS ILE GLU ASN HIS SEQRES 22 A 530 GLU GLY VAL ARG ARG PHE ASP GLU ILE LEU GLU ALA SER SEQRES 23 A 530 ASP GLY ILE MET VAL ALA ARG GLY ASP LEU GLY ILE GLU SEQRES 24 A 530 ILE PRO ALA GLU LYS VAL PHE LEU ALA GLN LYS MET ILE SEQRES 25 A 530 ILE GLY ARG CYS ASN ARG ALA GLY LYS PRO VAL ILE CYS SEQRES 26 A 530 ALA THR GLN MET LEU GLU SER MET ILE LYS LYS PRO ARG SEQRES 27 A 530 PRO THR ARG ALA GLU GLY SER ASP VAL ALA ASN ALA VAL SEQRES 28 A 530 LEU ASP GLY ALA ASP CYS ILE MET LEU SER GLY GLU THR SEQRES 29 A 530 ALA LYS GLY ASP TYR PRO LEU GLU ALA VAL ARG MET GLN SEQRES 30 A 530 HIS LEU ILE ALA ARG GLU ALA GLU ALA ALA MET PHE HIS SEQRES 31 A 530 ARG LYS LEU PHE GLU GLU LEU ALA ARG SER SER SER HIS SEQRES 32 A 530 SER THR ASP LEU MET GLU ALA MET ALA MET GLY SER VAL SEQRES 33 A 530 GLU ALA SER TYR LYS CYS LEU ALA ALA ALA LEU ILE VAL SEQRES 34 A 530 LEU THR GLU SER GLY ARG SER ALA HIS GLN VAL ALA ARG SEQRES 35 A 530 TYR ARG PRO ARG ALA PRO ILE ILE ALA VAL THR ARG ASN SEQRES 36 A 530 HIS GLN THR ALA ARG GLN ALA HIS LEU TYR ARG GLY ILE SEQRES 37 A 530 PHE PRO VAL VAL CYS LYS ASP PRO VAL GLN GLU ALA TRP SEQRES 38 A 530 ALA GLU ASP VAL ASP LEU ARG VAL ASN LEU ALA MET ASN SEQRES 39 A 530 VAL GLY LYS ALA ALA GLY PHE PHE LYS LYS GLY ASP VAL SEQRES 40 A 530 VAL ILE VAL LEU THR GLY TRP ARG PRO GLY SER GLY PHE SEQRES 41 A 530 THR ASN THR MET ARG VAL VAL PRO VAL PRO HET K A 532 1 HET MN A 534 1 HET PYR A 533 6 HETNAM K POTASSIUM ION HETNAM MN MANGANESE (II) ION HETNAM PYR PYRUVIC ACID FORMUL 2 K K 1+ FORMUL 3 MN MN 2+ FORMUL 4 PYR C3 H4 O3 HELIX 1 H1 LEU A 17 MET A 21 1 5 HELIX 2 H2 PHE A 25 CYS A 30 1 6 HELIX 3 H3 VAL A 57 SER A 66 1 10 HELIX 4 H4 HIS A 80 THR A 94 1 15 HELIX 5 H5 GLU A 222 GLU A 234 1 13 HELIX 6 H6 ALA A 248 LEU A 257 1 10 HELIX 7 H7 HIS A 273 ARG A 277 1 5 HELIX 8 H8 PHE A 279 ALA A 285 1 7 HELIX 9 H9 ARG A 293 GLU A 299 1 7 HELIX 10 H10 ALA A 302 ALA A 319 1 18 HELIX 11 H11 ARG A 341 ASP A 353 1 13 HELIX 12 H12 PRO A 370 ALA A 387 1 18 HELIX 13 H13 HIS A 390 SER A 400 1 11 HELIX 14 H14 LEU A 407 LYS A 421 1 15 HELIX 15 H15 ARG A 435 ARG A 442 1 8 HELIX 16 H16 HIS A 456 LEU A 464 1 9 HELIX 17 H17 TRP A 481 ALA A 499 1 19 SHEET 1 S1 1 THR A 44 ILE A 50 0 SHEET 1 S2 1 VAL A 70 ASN A 74 0 SHEET 1 S3 1 ALA A 108 LYS A 114 0 SHEET 1 S4 1 ILE A 118 ILE A 123 0 SHEET 1 S5 1 GLU A 132 LYS A 135 0 SHEET 1 S6 1 ALA A 137 THR A 142 0 SHEET 1 S7 1 ILE A 155 LEU A 158 0 SHEET 1 S8 1 SER A 171 VAL A 175 0 SHEET 1 S9 1 ILE A 180 GLY A 188 0 SHEET 1 S10 1 PHE A 191 VAL A 196 0 SHEET 1 S11 1 ASN A 198 PHE A 201 0 SHEET 1 S12 1 LYS A 206 PRO A 211 0 SHEET 1 S13 1 MET A 238 SER A 242 0 SHEET 1 S14 1 LYS A 265 ILE A 270 0 SHEET 1 S15 1 GLY A 288 ALA A 292 0 SHEET 1 S16 1 LYS A 321 ALA A 326 0 SHEET 1 S18 1 CYS A 357 LEU A 360 0 SHEET 1 S19 1 ALA A 426 THR A 431 0 SHEET 1 S20 1 ILE A 449 THR A 453 0 SHEET 1 S21 1 ILE A 468 CYS A 473 0 SHEET 1 S22 1 VAL A 507 GLY A 513 0 SHEET 1 S23 1 THR A 523 PRO A 528 0 LINK OD1 ASN A 74 K K A 532 1555 1555 3.17 LINK OG SER A 76 K K A 532 1555 1555 2.92 LINK OD1 ASP A 112 K K A 532 1555 1555 2.85 LINK O THR A 113 K K A 532 1555 1555 2.81 LINK OE2 GLU A 271 MN MN A 534 1555 1555 2.18 LINK OD2 ASP A 295 MN MN A 534 1555 1555 2.24 LINK OXT PYR A 533 MN MN A 534 1555 1555 2.10 LINK O3 PYR A 533 MN MN A 534 1555 1555 2.08 SITE 1 AC1 4 ASN A 74 SER A 76 ASP A 112 THR A 113 SITE 1 AC2 3 GLU A 271 ASP A 295 PYR A 533 SITE 1 AC3 8 LYS A 269 GLU A 271 MET A 290 ALA A 292 SITE 2 AC3 8 GLY A 294 ASP A 295 THR A 327 MN A 534 CRYST1 83.600 109.900 146.800 94.90 93.60 112.30 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011962 0.004906 0.001342 0.00000 SCALE2 0.000000 0.009835 0.001172 0.00000 SCALE3 0.000000 0.000000 0.006874 0.00000