PDB Short entry for 1PL4 HEADER OXIDOREDUCTASE 06-JUN-03 1PL4 TITLE CRYSTAL STRUCTURE OF HUMAN MNSOD Y166F MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN], MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGANELLE: MITOCHONDRIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: QC774; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.FAN,J.A.TAINER REVDAT 6 16-AUG-23 1PL4 1 REMARK REVDAT 5 27-OCT-21 1PL4 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1PL4 1 REMARK REVDAT 3 24-FEB-09 1PL4 1 VERSN REVDAT 2 30-MAR-04 1PL4 1 JRNL REVDAT 1 16-DEC-03 1PL4 0 JRNL AUTH A.S.HEARN,L.FAN,J.R.LEPOCK,J.P.LUBA,W.B.GREENLEAF, JRNL AUTH 2 D.E.CABELLI,J.A.TAINER,H.S.NICK,D.N.SILVERMAN JRNL TITL AMINO ACID SUBSTITUTION AT THE DIMERIC INTERFACE OF HUMAN JRNL TITL 2 MANGANESE SUPEROXIDE DISMUTASE JRNL REF J.BIOL.CHEM. V. 279 5861 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14638684 JRNL DOI 10.1074/JBC.M311310200 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.201 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.200 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 5218 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 123830 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.186 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 104006 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 680 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 6934.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 6052.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 27839 REMARK 3 NUMBER OF RESTRAINTS : 25962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 ANGLE DISTANCES (A) : 0.024 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT REDUCED FREE R REMARK 3 (NO CUTOFF) REMARK 4 REMARK 4 1PL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123885 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ABM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, POTASSIUM PHOSPHATE, PH 7.6, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.84450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.89750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.85550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.89750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.84450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.85550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FOUR MOLECULES IN THE ASYMMETRIC UNIT REVEAL THE REMARK 300 BIOLOGICAL TETRAMERIC ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 465 LYS C 198 REMARK 465 LYS D 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS D 31 ND1 HIS D 31 CE1 -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 31 CB - CG - CD2 ANGL. DEV. = 9.6 DEGREES REMARK 500 HIS A 31 CG - ND1 - CE1 ANGL. DEV. = 7.9 DEGREES REMARK 500 TYR A 45 CB - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR A 45 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 TRP A 78 CG - CD1 - NE1 ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP A 78 CD1 - NE1 - CE2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 192 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 HIS B 31 CB - CG - CD2 ANGL. DEV. = 14.3 DEGREES REMARK 500 HIS B 31 CB - CG - ND1 ANGL. DEV. = -10.0 DEGREES REMARK 500 TRP B 78 CD1 - NE1 - CE2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 99 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP B 144 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 HIS C 31 CB - CG - CD2 ANGL. DEV. = 12.7 DEGREES REMARK 500 HIS C 31 CG - ND1 - CE1 ANGL. DEV. = 6.5 DEGREES REMARK 500 TYR C 34 CG - CD1 - CE1 ANGL. DEV. = 6.6 DEGREES REMARK 500 TYR C 34 CG - CD2 - CE2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR C 34 CD1 - CE1 - CZ ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR C 34 CZ - CE2 - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR C 45 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 TRP C 78 CB - CG - CD1 ANGL. DEV. = -9.3 DEGREES REMARK 500 TRP C 78 CD1 - NE1 - CE2 ANGL. DEV. = 7.2 DEGREES REMARK 500 HIS D 31 CB - CG - CD2 ANGL. DEV. = 15.9 DEGREES REMARK 500 HIS D 31 ND1 - CG - CD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 HIS D 31 CG - ND1 - CE1 ANGL. DEV. = 12.1 DEGREES REMARK 500 TYR D 176 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG D 192 CD - NE - CZ ANGL. DEV. = 27.3 DEGREES REMARK 500 ARG D 192 NE - CZ - NH1 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG D 192 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 -62.36 -109.05 REMARK 500 ASN A 142 -126.52 58.37 REMARK 500 TYR A 165 -20.93 -147.86 REMARK 500 LYS A 170 -135.43 50.46 REMARK 500 ASN B 142 -121.49 52.36 REMARK 500 TYR B 165 -19.03 -146.96 REMARK 500 LYS B 170 -135.97 58.22 REMARK 500 ASN C 142 -122.56 52.35 REMARK 500 TYR C 165 -17.42 -147.50 REMARK 500 LYS C 170 -137.38 55.31 REMARK 500 ASN D 142 -126.22 58.64 REMARK 500 TYR D 165 -17.50 -146.88 REMARK 500 LYS D 170 -135.05 54.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 200 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 74 NE2 88.4 REMARK 620 3 ASP A 159 OD2 82.7 108.4 REMARK 620 4 HIS A 163 NE2 89.9 136.4 114.6 REMARK 620 5 HOH A 201 O 175.0 88.5 94.6 95.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 200 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 74 NE2 86.9 REMARK 620 3 ASP B 159 OD2 84.2 112.2 REMARK 620 4 HIS B 163 NE2 85.7 130.1 115.9 REMARK 620 5 HOH B 202 O 176.6 93.2 92.6 96.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 200 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 26 NE2 REMARK 620 2 HIS C 74 NE2 87.5 REMARK 620 3 ASP C 159 OD2 84.9 110.9 REMARK 620 4 HIS C 163 NE2 90.0 131.0 117.6 REMARK 620 5 HOH C 203 O 174.6 87.4 95.4 94.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 200 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 26 NE2 REMARK 620 2 HIS D 74 NE2 85.4 REMARK 620 3 ASP D 159 OD2 85.4 114.5 REMARK 620 4 HIS D 163 NE2 88.0 130.0 114.3 REMARK 620 5 HOH D 204 O 175.7 91.5 98.6 91.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 200 DBREF 1PL4 A 1 198 UNP P04179 SODM_HUMAN 25 222 DBREF 1PL4 B 1 198 UNP P04179 SODM_HUMAN 25 222 DBREF 1PL4 C 1 198 UNP P04179 SODM_HUMAN 25 222 DBREF 1PL4 D 1 198 UNP P04179 SODM_HUMAN 25 222 SEQADV 1PL4 PHE A 166 UNP P04179 TYR 190 ENGINEERED MUTATION SEQADV 1PL4 PHE B 166 UNP P04179 TYR 190 ENGINEERED MUTATION SEQADV 1PL4 PHE C 166 UNP P04179 TYR 190 ENGINEERED MUTATION SEQADV 1PL4 PHE D 166 UNP P04179 TYR 190 ENGINEERED MUTATION SEQRES 1 A 198 LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY ALA SEQRES 2 A 198 LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU HIS SEQRES 3 A 198 HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU ASN SEQRES 4 A 198 VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS GLY SEQRES 5 A 198 ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 A 198 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 A 198 THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS GLY SEQRES 8 A 198 GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER PHE SEQRES 9 A 198 ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL GLY SEQRES 10 A 198 VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN LYS SEQRES 11 A 198 GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN GLN SEQRES 12 A 198 ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU LEU SEQRES 13 A 198 GLY ILE ASP VAL TRP GLU HIS ALA TYR PHE LEU GLN TYR SEQRES 14 A 198 LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP ASN SEQRES 15 A 198 VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET ALA SEQRES 16 A 198 CYS LYS LYS SEQRES 1 B 198 LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY ALA SEQRES 2 B 198 LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU HIS SEQRES 3 B 198 HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU ASN SEQRES 4 B 198 VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS GLY SEQRES 5 B 198 ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 B 198 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 B 198 THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS GLY SEQRES 8 B 198 GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER PHE SEQRES 9 B 198 ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL GLY SEQRES 10 B 198 VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN LYS SEQRES 11 B 198 GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN GLN SEQRES 12 B 198 ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU LEU SEQRES 13 B 198 GLY ILE ASP VAL TRP GLU HIS ALA TYR PHE LEU GLN TYR SEQRES 14 B 198 LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP ASN SEQRES 15 B 198 VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET ALA SEQRES 16 B 198 CYS LYS LYS SEQRES 1 C 198 LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY ALA SEQRES 2 C 198 LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU HIS SEQRES 3 C 198 HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU ASN SEQRES 4 C 198 VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS GLY SEQRES 5 C 198 ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 C 198 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 C 198 THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS GLY SEQRES 8 C 198 GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER PHE SEQRES 9 C 198 ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL GLY SEQRES 10 C 198 VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN LYS SEQRES 11 C 198 GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN GLN SEQRES 12 C 198 ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU LEU SEQRES 13 C 198 GLY ILE ASP VAL TRP GLU HIS ALA TYR PHE LEU GLN TYR SEQRES 14 C 198 LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP ASN SEQRES 15 C 198 VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET ALA SEQRES 16 C 198 CYS LYS LYS SEQRES 1 D 198 LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY ALA SEQRES 2 D 198 LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU HIS SEQRES 3 D 198 HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU ASN SEQRES 4 D 198 VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS GLY SEQRES 5 D 198 ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 D 198 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 D 198 THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS GLY SEQRES 8 D 198 GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER PHE SEQRES 9 D 198 ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL GLY SEQRES 10 D 198 VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN LYS SEQRES 11 D 198 GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN GLN SEQRES 12 D 198 ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU LEU SEQRES 13 D 198 GLY ILE ASP VAL TRP GLU HIS ALA TYR PHE LEU GLN TYR SEQRES 14 D 198 LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP ASN SEQRES 15 D 198 VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET ALA SEQRES 16 D 198 CYS LYS LYS HET MN A 200 1 HET MN B 200 1 HET MN C 200 1 HET MN D 200 1 HETNAM MN MANGANESE (II) ION FORMUL 5 MN 4(MN 2+) FORMUL 9 HOH *680(H2 O) HELIX 1 1 ASN A 19 LYS A 29 1 11 HELIX 2 2 LYS A 29 LYS A 51 1 23 HELIX 3 3 ASP A 53 LEU A 60 1 8 HELIX 4 4 LEU A 60 ASN A 80 1 21 HELIX 5 5 LYS A 90 GLY A 102 1 13 HELIX 6 6 SER A 103 GLY A 117 1 15 HELIX 7 7 PRO A 145 GLY A 151 1 7 HELIX 8 8 TRP A 161 ALA A 164 5 4 HELIX 9 9 TYR A 165 LYS A 170 1 6 HELIX 10 10 VAL A 172 TRP A 181 1 10 HELIX 11 11 ASN A 182 ILE A 184 5 3 HELIX 12 12 ASN A 185 CYS A 196 1 12 HELIX 13 13 ASN B 19 LYS B 29 1 11 HELIX 14 14 LYS B 29 LYS B 51 1 23 HELIX 15 15 ASP B 53 ASN B 80 1 28 HELIX 16 16 LYS B 90 GLY B 102 1 13 HELIX 17 17 SER B 103 GLY B 117 1 15 HELIX 18 18 PRO B 145 GLY B 151 1 7 HELIX 19 19 TRP B 161 ALA B 164 5 4 HELIX 20 20 TYR B 165 LYS B 170 1 6 HELIX 21 21 VAL B 172 TRP B 181 1 10 HELIX 22 22 ASN B 182 ILE B 184 5 3 HELIX 23 23 ASN B 185 CYS B 196 1 12 HELIX 24 24 ASN C 19 LYS C 29 1 11 HELIX 25 25 LYS C 29 LYS C 51 1 23 HELIX 26 26 ASP C 53 LEU C 60 1 8 HELIX 27 27 LEU C 60 ASN C 80 1 21 HELIX 28 28 LYS C 90 GLY C 102 1 13 HELIX 29 29 SER C 103 GLY C 117 1 15 HELIX 30 30 PRO C 145 GLY C 151 1 7 HELIX 31 31 TRP C 161 ALA C 164 5 4 HELIX 32 32 TYR C 165 LYS C 170 1 6 HELIX 33 33 VAL C 172 TRP C 181 1 10 HELIX 34 34 ASN C 182 ILE C 184 5 3 HELIX 35 35 ASN C 185 ALA C 195 1 11 HELIX 36 36 ASN D 19 LYS D 29 1 11 HELIX 37 37 LYS D 29 LYS D 51 1 23 HELIX 38 38 ASP D 53 ASN D 80 1 28 HELIX 39 39 GLY D 91 GLY D 102 1 12 HELIX 40 40 SER D 103 GLY D 117 1 15 HELIX 41 41 PRO D 145 GLY D 151 1 7 HELIX 42 42 TRP D 161 ALA D 164 5 4 HELIX 43 43 TYR D 165 LYS D 170 1 6 HELIX 44 44 VAL D 172 TRP D 181 1 10 HELIX 45 45 ASN D 182 ILE D 184 5 3 HELIX 46 46 ASN D 185 ALA D 195 1 11 SHEET 1 A 3 HIS A 134 PRO A 141 0 SHEET 2 A 3 GLY A 122 ASN A 129 -1 N TRP A 125 O ALA A 138 SHEET 3 A 3 ILE A 153 ASP A 159 -1 O LEU A 156 N LEU A 126 SHEET 1 B 3 HIS B 134 PRO B 141 0 SHEET 2 B 3 GLY B 122 ASN B 129 -1 N ASN B 129 O HIS B 134 SHEET 3 B 3 ILE B 153 ASP B 159 -1 O ILE B 158 N GLY B 124 SHEET 1 C 3 HIS C 134 PRO C 141 0 SHEET 2 C 3 GLY C 122 ASN C 129 -1 N ASN C 129 O HIS C 134 SHEET 3 C 3 ILE C 153 ASP C 159 -1 O ILE C 158 N GLY C 124 SHEET 1 D 3 HIS D 134 PRO D 141 0 SHEET 2 D 3 GLY D 122 ASN D 129 -1 N ASN D 129 O HIS D 134 SHEET 3 D 3 ILE D 153 ASP D 159 -1 O LEU D 155 N LEU D 126 LINK NE2 HIS A 26 MN MN A 200 1555 1555 2.18 LINK NE2 HIS A 74 MN MN A 200 1555 1555 2.22 LINK OD2 ASP A 159 MN MN A 200 1555 1555 2.05 LINK NE2 HIS A 163 MN MN A 200 1555 1555 2.16 LINK MN MN A 200 O HOH A 201 1555 1555 1.98 LINK NE2 HIS B 26 MN MN B 200 1555 1555 2.21 LINK NE2 HIS B 74 MN MN B 200 1555 1555 2.14 LINK OD2 ASP B 159 MN MN B 200 1555 1555 1.96 LINK NE2 HIS B 163 MN MN B 200 1555 1555 2.21 LINK MN MN B 200 O HOH B 202 1555 1555 2.10 LINK NE2 HIS C 26 MN MN C 200 1555 1555 2.20 LINK NE2 HIS C 74 MN MN C 200 1555 1555 2.20 LINK OD2 ASP C 159 MN MN C 200 1555 1555 2.03 LINK NE2 HIS C 163 MN MN C 200 1555 1555 2.19 LINK MN MN C 200 O HOH C 203 1555 1555 1.99 LINK NE2 HIS D 26 MN MN D 200 1555 1555 2.16 LINK NE2 HIS D 74 MN MN D 200 1555 1555 2.15 LINK OD2 ASP D 159 MN MN D 200 1555 1555 2.01 LINK NE2 HIS D 163 MN MN D 200 1555 1555 2.16 LINK MN MN D 200 O HOH D 204 1555 1555 1.89 CISPEP 1 GLU A 15 PRO A 16 0 -0.42 CISPEP 2 GLU B 15 PRO B 16 0 -1.62 CISPEP 3 GLU C 15 PRO C 16 0 0.42 CISPEP 4 GLU D 15 PRO D 16 0 -0.29 SITE 1 AC1 5 HIS A 26 HIS A 74 ASP A 159 HIS A 163 SITE 2 AC1 5 HOH A 201 SITE 1 AC2 5 HIS B 26 HIS B 74 ASP B 159 HIS B 163 SITE 2 AC2 5 HOH B 202 SITE 1 AC3 5 HIS C 26 HIS C 74 ASP C 159 HIS C 163 SITE 2 AC3 5 HOH C 203 SITE 1 AC4 5 HIS D 26 HIS D 74 ASP D 159 HIS D 163 SITE 2 AC4 5 HOH D 204 CRYST1 73.689 77.711 135.795 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013571 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007364 0.00000