PDB Short entry for 1PYS HEADER AMINOACYL-TRNA SYNTHETASE 14-NOV-96 1PYS TITLE PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.1.1.20; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PHENYLALANYL-TRNA SYNTHETASE; COMPND 7 CHAIN: B; COMPND 8 EC: 6.1.1.20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 7 ORGANISM_TAXID: 300852; SOURCE 8 STRAIN: HB8 KEYWDS PHENYLALANYL-TRNA SYNTHETASE, CLASS II AMINOACYL-TRNA SYNTHETASE, KEYWDS 2 THERMUS THERMOPHILUS, RBD DOMAIN, SH3 DOMAIN, HELIX-TURN-HELIX KEYWDS 3 MOTIF, AMINOACYL-TRNA SYNTHETASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SAFRO,L.MOSYAK,Y.GOLDGUR,L.RESHETNIKOVA,M.DELARUE REVDAT 4 14-FEB-24 1PYS 1 REMARK LINK REVDAT 3 13-JUL-11 1PYS 1 VERSN REVDAT 2 24-FEB-09 1PYS 1 VERSN REVDAT 1 19-NOV-97 1PYS 0 JRNL AUTH L.MOSYAK,L.RESHETNIKOVA,Y.GOLDGUR,M.DELARUE,M.G.SAFRO JRNL TITL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS JRNL TITL 2 THERMOPHILUS. JRNL REF NAT.STRUCT.BIOL. V. 2 537 1995 JRNL REFN ISSN 1072-8368 JRNL PMID 7664121 JRNL DOI 10.1038/NSB0795-537 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 50958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5119 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.76 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4231 REMARK 3 BIN R VALUE (WORKING SET) : 0.2625 REMARK 3 BIN FREE R VALUE : 0.3309 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 499 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8250 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.720 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.44 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.524 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : PARAM.MG REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PYS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-92 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52260 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.33 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM AMMONIUM REMARK 280 SULFATE 28% OF SATURATION, 20 MM IMIDAZOLE, PH 7.7, 10 MM MGCL2, REMARK 280 1 MM NAN3 AT 4 DEGREES CELSIUS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.23333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.23333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 94.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 80340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 GLN A 10 REMARK 465 ASN A 11 REMARK 465 ALA A 12 REMARK 465 ARG A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 LYS A 19 REMARK 465 ALA A 20 REMARK 465 LEU A 21 REMARK 465 LYS A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 24 REMARK 465 TYR A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 LYS A 28 REMARK 465 LYS A 29 REMARK 465 GLY A 30 REMARK 465 LEU A 31 REMARK 465 LEU A 32 REMARK 465 THR A 33 REMARK 465 GLN A 34 REMARK 465 GLU A 35 REMARK 465 MET A 36 REMARK 465 LYS A 37 REMARK 465 GLY A 38 REMARK 465 LEU A 39 REMARK 465 SER A 40 REMARK 465 ALA A 41 REMARK 465 LEU A 42 REMARK 465 PRO A 43 REMARK 465 LEU A 44 REMARK 465 GLU A 45 REMARK 465 GLU A 46 REMARK 465 ARG A 47 REMARK 465 ARG A 48 REMARK 465 LYS A 49 REMARK 465 ARG A 50 REMARK 465 GLY A 51 REMARK 465 GLN A 52 REMARK 465 GLU A 53 REMARK 465 LEU A 54 REMARK 465 ASN A 55 REMARK 465 ALA A 56 REMARK 465 ILE A 57 REMARK 465 LYS A 58 REMARK 465 ALA A 59 REMARK 465 ALA A 60 REMARK 465 LEU A 61 REMARK 465 GLU A 62 REMARK 465 ALA A 63 REMARK 465 ALA A 64 REMARK 465 LEU A 65 REMARK 465 GLU A 66 REMARK 465 ALA A 67 REMARK 465 ARG A 68 REMARK 465 GLU A 69 REMARK 465 LYS A 70 REMARK 465 ALA A 71 REMARK 465 LEU A 72 REMARK 465 GLU A 73 REMARK 465 GLU A 74 REMARK 465 ALA A 75 REMARK 465 ALA A 76 REMARK 465 LEU A 77 REMARK 465 LYS A 78 REMARK 465 GLU A 79 REMARK 465 ALA A 80 REMARK 465 LEU A 81 REMARK 465 GLU A 82 REMARK 465 ARG A 83 REMARK 465 GLU A 84 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 85 REMARK 475 PRO B 785 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 780 N CA C O CB CG CD REMARK 480 ARG B 780 NE CZ NH1 NH2 REMARK 480 GLY B 781 N CA C O REMARK 480 LEU B 782 N CA C O CB CG CD1 REMARK 480 LEU B 782 CD2 REMARK 480 ASP B 783 N CA C O CB CG OD1 REMARK 480 ASP B 783 OD2 REMARK 480 THR B 784 N CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS B 610 H1 HOH B 896 1.17 REMARK 500 H PHE B 480 H2 HOH B 884 1.18 REMARK 500 HH11 ARG B 291 H2 HOH B 1028 1.18 REMARK 500 HZ3 LYS B 741 H1 HOH B 969 1.20 REMARK 500 HD21 ASN B 80 H LEU B 132 1.28 REMARK 500 HE ARG B 525 H2 HOH B 972 1.29 REMARK 500 H PHE A 336 H2 HOH A 355 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG B 304 H1 HOH B 988 3565 1.25 REMARK 500 H2 HOH B 1025 H2 HOH B 1025 4555 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 164 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 VAL B 38 N - CA - C ANGL. DEV. = 20.7 DEGREES REMARK 500 LEU B 133 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 134 -60.45 -130.02 REMARK 500 LEU A 137 38.13 -84.11 REMARK 500 HIS A 142 72.83 43.21 REMARK 500 THR A 211 13.35 -141.31 REMARK 500 GLU A 262 111.87 -167.55 REMARK 500 VAL B 12 79.87 -111.26 REMARK 500 PHE B 39 64.04 -109.21 REMARK 500 ARG B 164 66.96 -114.33 REMARK 500 PRO B 199 21.31 -74.91 REMARK 500 ALA B 210 66.65 -157.93 REMARK 500 HIS B 212 119.66 -162.89 REMARK 500 ASN B 244 -64.82 -28.60 REMARK 500 ARG B 266 -34.02 -39.71 REMARK 500 LEU B 286 -38.29 -34.24 REMARK 500 PRO B 295 -11.98 -49.06 REMARK 500 VAL B 316 -61.05 -128.61 REMARK 500 ARG B 325 -167.17 -118.74 REMARK 500 ARG B 525 60.52 66.85 REMARK 500 ARG B 564 76.37 -108.56 REMARK 500 ARG B 578 100.64 -170.28 REMARK 500 GLU B 579 -49.51 79.46 REMARK 500 ARG B 695 141.41 -172.11 REMARK 500 ALA B 703 -50.96 -29.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 351 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 262 OE2 REMARK 620 2 GLU A 262 OE1 45.8 REMARK 620 3 GLU B 461 OE1 68.6 86.5 REMARK 620 4 HOH B 905 O 74.7 120.4 68.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 351 DBREF 1PYS A 1 350 UNP Q5SGX2 Q5SGX2_THET8 1 350 DBREF 1PYS B 1 785 UNP Q5SGX1 Q5SGX1_THET8 1 785 SEQRES 1 A 350 MET LEU GLU GLU ALA LEU ALA ALA ILE GLN ASN ALA ARG SEQRES 2 A 350 ASP LEU GLU GLU LEU LYS ALA LEU LYS ALA ARG TYR LEU SEQRES 3 A 350 GLY LYS LYS GLY LEU LEU THR GLN GLU MET LYS GLY LEU SEQRES 4 A 350 SER ALA LEU PRO LEU GLU GLU ARG ARG LYS ARG GLY GLN SEQRES 5 A 350 GLU LEU ASN ALA ILE LYS ALA ALA LEU GLU ALA ALA LEU SEQRES 6 A 350 GLU ALA ARG GLU LYS ALA LEU GLU GLU ALA ALA LEU LYS SEQRES 7 A 350 GLU ALA LEU GLU ARG GLU ARG VAL ASP VAL SER LEU PRO SEQRES 8 A 350 GLY ALA SER LEU PHE SER GLY GLY LEU HIS PRO ILE THR SEQRES 9 A 350 LEU MET GLU ARG GLU LEU VAL GLU ILE PHE ARG ALA LEU SEQRES 10 A 350 GLY TYR GLN ALA VAL GLU GLY PRO GLU VAL GLU SER GLU SEQRES 11 A 350 PHE PHE ASN PHE ASP ALA LEU ASN ILE PRO GLU HIS HIS SEQRES 12 A 350 PRO ALA ARG ASP MET TRP ASP THR PHE TRP LEU THR GLY SEQRES 13 A 350 GLU GLY PHE ARG LEU GLU GLY PRO LEU GLY GLU GLU VAL SEQRES 14 A 350 GLU GLY ARG LEU LEU LEU ARG THR HIS THR SER PRO MET SEQRES 15 A 350 GLN VAL ARG TYR MET VAL ALA HIS THR PRO PRO PHE ARG SEQRES 16 A 350 ILE VAL VAL PRO GLY ARG VAL PHE ARG PHE GLU GLN THR SEQRES 17 A 350 ASP ALA THR HIS GLU ALA VAL PHE HIS GLN LEU GLU GLY SEQRES 18 A 350 LEU VAL VAL GLY GLU GLY ILE ALA MET ALA HIS LEU LYS SEQRES 19 A 350 GLY ALA ILE TYR GLU LEU ALA GLN ALA LEU PHE GLY PRO SEQRES 20 A 350 ASP SER LYS VAL ARG PHE GLN PRO VAL TYR PHE PRO PHE SEQRES 21 A 350 VAL GLU PRO GLY ALA GLN PHE ALA VAL TRP TRP PRO GLU SEQRES 22 A 350 GLY GLY LYS TRP LEU GLU LEU GLY GLY ALA GLY MET VAL SEQRES 23 A 350 HIS PRO LYS VAL PHE GLN ALA VAL ASP ALA TYR ARG GLU SEQRES 24 A 350 ARG LEU GLY LEU PRO PRO ALA TYR ARG GLY VAL THR GLY SEQRES 25 A 350 PHE ALA PHE GLY LEU GLY VAL GLU ARG LEU ALA MET LEU SEQRES 26 A 350 ARG TYR GLY ILE PRO ASP ILE ARG TYR PHE PHE GLY GLY SEQRES 27 A 350 ARG LEU LYS PHE LEU GLU GLN PHE LYS GLY VAL LEU SEQRES 1 B 785 MET ARG VAL PRO PHE SER TRP LEU LYS ALA TYR VAL PRO SEQRES 2 B 785 GLU LEU GLU SER PRO GLU VAL LEU GLU GLU ARG LEU ALA SEQRES 3 B 785 GLY LEU GLY PHE GLU THR ASP ARG ILE GLU ARG VAL PHE SEQRES 4 B 785 PRO ILE PRO ARG GLY VAL VAL PHE ALA ARG VAL LEU GLU SEQRES 5 B 785 ALA HIS PRO ILE PRO GLY THR ARG LEU LYS ARG LEU VAL SEQRES 6 B 785 LEU ASP ALA GLY ARG THR VAL GLU VAL VAL SER GLY ALA SEQRES 7 B 785 GLU ASN ALA ARG LYS GLY ILE GLY VAL ALA LEU ALA LEU SEQRES 8 B 785 PRO GLY THR GLU LEU PRO GLY LEU GLY GLN LYS VAL GLY SEQRES 9 B 785 GLU ARG VAL ILE GLN GLY VAL ARG SER PHE GLY MET ALA SEQRES 10 B 785 LEU SER PRO ARG GLU LEU GLY VAL GLY GLU TYR GLY GLY SEQRES 11 B 785 GLY LEU LEU GLU PHE PRO GLU ASP ALA LEU PRO PRO GLY SEQRES 12 B 785 THR PRO LEU SER GLU ALA TRP PRO GLU GLU VAL VAL LEU SEQRES 13 B 785 ASP LEU GLU VAL THR PRO ASN ARG PRO ASP ALA LEU GLY SEQRES 14 B 785 LEU LEU GLY LEU ALA ARG ASP LEU HIS ALA LEU GLY TYR SEQRES 15 B 785 ALA LEU VAL GLU PRO GLU ALA ALA LEU LYS ALA GLU ALA SEQRES 16 B 785 LEU PRO LEU PRO PHE ALA LEU LYS VAL GLU ASP PRO GLU SEQRES 17 B 785 GLY ALA PRO HIS PHE THR LEU GLY TYR ALA PHE GLY LEU SEQRES 18 B 785 ARG VAL ALA PRO SER PRO LEU TRP MET GLN ARG ALA LEU SEQRES 19 B 785 PHE ALA ALA GLY MET ARG PRO ILE ASN ASN VAL VAL ASP SEQRES 20 B 785 VAL THR ASN TYR VAL MET LEU GLU ARG ALA GLN PRO MET SEQRES 21 B 785 HIS ALA PHE ASP LEU ARG PHE VAL GLY GLU GLY ILE ALA SEQRES 22 B 785 VAL ARG ARG ALA ARG GLU GLY GLU ARG LEU LYS THR LEU SEQRES 23 B 785 ASP GLY VAL GLU ARG THR LEU HIS PRO GLU ASP LEU VAL SEQRES 24 B 785 ILE ALA GLY TRP ARG GLY GLU GLU SER PHE PRO LEU GLY SEQRES 25 B 785 LEU ALA GLY VAL MET GLY GLY ALA GLU SER GLU VAL ARG SEQRES 26 B 785 GLU ASP THR GLU ALA ILE ALA LEU GLU VAL ALA CYS PHE SEQRES 27 B 785 ASP PRO VAL SER ILE ARG LYS THR ALA ARG ARG HIS GLY SEQRES 28 B 785 LEU ARG THR GLU ALA SER HIS ARG PHE GLU ARG GLY VAL SEQRES 29 B 785 ASP PRO LEU GLY GLN VAL PRO ALA GLN ARG ARG ALA LEU SEQRES 30 B 785 SER LEU LEU GLN ALA LEU ALA GLY ALA ARG VAL ALA GLU SEQRES 31 B 785 ALA LEU LEU GLU ALA GLY SER PRO LYS PRO PRO GLU ALA SEQRES 32 B 785 ILE PRO PHE ARG PRO GLU TYR ALA ASN ARG LEU LEU GLY SEQRES 33 B 785 THR SER TYR PRO GLU ALA GLU GLN ILE ALA ILE LEU LYS SEQRES 34 B 785 ARG LEU GLY CYS ARG VAL GLU GLY GLU GLY PRO THR TYR SEQRES 35 B 785 ARG VAL THR PRO PRO SER HIS ARG LEU ASP LEU ARG LEU SEQRES 36 B 785 GLU GLU ASP LEU VAL GLU GLU VAL ALA ARG ILE GLN GLY SEQRES 37 B 785 TYR GLU THR ILE PRO LEU ALA LEU PRO ALA PHE PHE PRO SEQRES 38 B 785 ALA PRO ASP ASN ARG GLY VAL GLU ALA PRO TYR ARG LYS SEQRES 39 B 785 GLU GLN ARG LEU ARG GLU VAL LEU SER GLY LEU GLY PHE SEQRES 40 B 785 GLN GLU VAL TYR THR TYR SER PHE MET ASP PRO GLU ASP SEQRES 41 B 785 ALA ARG ARG PHE ARG LEU ASP PRO PRO ARG LEU LEU LEU SEQRES 42 B 785 LEU ASN PRO LEU ALA PRO GLU LYS ALA ALA LEU ARG THR SEQRES 43 B 785 HIS LEU PHE PRO GLY LEU VAL ARG VAL LEU LYS GLU ASN SEQRES 44 B 785 LEU ASP LEU ASP ARG PRO GLU ARG ALA LEU LEU PHE GLU SEQRES 45 B 785 VAL GLY ARG VAL PHE ARG GLU ARG GLU GLU THR HIS LEU SEQRES 46 B 785 ALA GLY LEU LEU PHE GLY GLU GLY VAL GLY LEU PRO TRP SEQRES 47 B 785 ALA LYS GLU ARG LEU SER GLY TYR PHE LEU LEU LYS GLY SEQRES 48 B 785 TYR LEU GLU ALA LEU PHE ALA ARG LEU GLY LEU ALA PHE SEQRES 49 B 785 ARG VAL GLU ALA GLN ALA PHE PRO PHE LEU HIS PRO GLY SEQRES 50 B 785 VAL SER GLY ARG VAL LEU VAL GLU GLY GLU GLU VAL GLY SEQRES 51 B 785 PHE LEU GLY ALA LEU HIS PRO GLU ILE ALA GLN GLU LEU SEQRES 52 B 785 GLU LEU PRO PRO VAL HIS LEU PHE GLU LEU ARG LEU PRO SEQRES 53 B 785 LEU PRO ASP LYS PRO LEU ALA PHE GLN ASP PRO SER ARG SEQRES 54 B 785 HIS PRO ALA ALA PHE ARG ASP LEU ALA VAL VAL VAL PRO SEQRES 55 B 785 ALA PRO THR PRO TYR GLY GLU VAL GLU ALA LEU VAL ARG SEQRES 56 B 785 GLU ALA ALA GLY PRO TYR LEU GLU SER LEU ALA LEU PHE SEQRES 57 B 785 ASP LEU TYR GLN GLY PRO PRO LEU PRO GLU GLY HIS LYS SEQRES 58 B 785 SER LEU ALA PHE HIS LEU ARG PHE ARG HIS PRO LYS ARG SEQRES 59 B 785 THR LEU ARG ASP GLU GLU VAL GLU GLU ALA VAL SER ARG SEQRES 60 B 785 VAL ALA GLU ALA LEU ARG ALA ARG GLY PHE GLY LEU ARG SEQRES 61 B 785 GLY LEU ASP THR PRO HET MG A 351 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *332(H2 O) HELIX 1 1 PRO A 102 LEU A 117 1 16 HELIX 2 2 GLU A 130 ILE A 139 1 10 HELIX 3 3 PRO A 144 MET A 148 5 5 HELIX 4 4 SER A 180 ALA A 189 1 10 HELIX 5 5 MET A 230 PHE A 245 1 16 HELIX 6 6 PRO A 288 ARG A 300 1 13 HELIX 7 7 VAL A 319 TYR A 327 1 9 HELIX 8 8 ILE A 332 TYR A 334 5 3 HELIX 9 9 LEU A 340 PHE A 346 1 7 HELIX 10 10 PHE B 5 ALA B 10 1 6 HELIX 11 11 PRO B 18 LEU B 28 1 11 HELIX 12 12 PRO B 120 LEU B 123 1 4 HELIX 13 13 LEU B 146 GLU B 148 5 3 HELIX 14 14 PRO B 165 LEU B 168 5 4 HELIX 15 15 LEU B 170 LEU B 180 1 11 HELIX 16 16 LEU B 228 ALA B 236 1 9 HELIX 17 17 ASN B 244 ARG B 256 1 13 HELIX 18 18 LEU B 265 VAL B 268 1 4 HELIX 19 19 PRO B 340 ARG B 349 1 10 HELIX 20 20 GLU B 355 ARG B 362 1 8 HELIX 21 21 GLN B 369 ALA B 384 1 16 HELIX 22 22 PRO B 408 LEU B 415 1 8 HELIX 23 23 GLU B 421 ARG B 430 1 10 HELIX 24 24 GLU B 456 GLN B 467 1 12 HELIX 25 25 TYR B 469 THR B 471 5 3 HELIX 26 26 PRO B 483 ASN B 485 5 3 HELIX 27 27 ALA B 490 LEU B 505 1 16 HELIX 28 28 PRO B 518 ARG B 523 5 6 HELIX 29 29 PRO B 539 LYS B 541 5 3 HELIX 30 30 PHE B 549 LEU B 562 1 14 HELIX 31 31 TYR B 606 ARG B 619 1 14 HELIX 32 32 PRO B 657 LEU B 663 1 7 HELIX 33 33 TYR B 707 ALA B 718 1 12 HELIX 34 34 ASP B 758 ALA B 774 1 17 SHEET 1 A 2 VAL A 127 SER A 129 0 SHEET 2 A 2 LEU A 173 LEU A 175 -1 N LEU A 174 O GLU A 128 SHEET 1 B 6 PHE A 194 PHE A 203 0 SHEET 2 B 6 VAL A 215 GLY A 225 -1 N VAL A 224 O PHE A 194 SHEET 3 B 6 THR A 311 GLY A 318 -1 N LEU A 317 O LEU A 219 SHEET 4 B 6 LYS A 276 MET A 285 -1 N GLY A 284 O ALA A 314 SHEET 5 B 6 GLY A 264 TRP A 271 -1 N TRP A 271 O LYS A 276 SHEET 6 B 6 LYS A 250 PRO A 255 -1 N GLN A 254 O GLN A 266 SHEET 1 C 3 ARG B 2 PRO B 4 0 SHEET 2 C 3 VAL B 154 GLU B 159 -1 N LEU B 156 O VAL B 3 SHEET 3 C 3 GLU B 31 ARG B 37 -1 N GLU B 36 O VAL B 155 SHEET 1 D 4 GLY B 86 ALA B 90 0 SHEET 2 D 4 VAL B 45 PRO B 55 -1 N ALA B 48 O VAL B 87 SHEET 3 D 4 LYS B 62 ASP B 67 -1 N ASP B 67 O ARG B 49 SHEET 4 D 4 THR B 71 SER B 76 -1 N SER B 76 O LYS B 62 SHEET 1 E 2 GLU B 105 ILE B 108 0 SHEET 2 E 2 VAL B 111 PHE B 114 -1 N SER B 113 O ARG B 106 SHEET 1 F 4 ALA B 201 VAL B 204 0 SHEET 2 F 4 GLY B 271 ARG B 276 1 N ILE B 272 O ALA B 201 SHEET 3 F 4 LEU B 298 ARG B 304 -1 N TRP B 303 O GLY B 271 SHEET 4 F 4 GLU B 307 LEU B 313 -1 N GLY B 312 O ILE B 300 SHEET 1 G 4 LEU B 393 ALA B 395 0 SHEET 2 G 4 HIS B 212 PHE B 219 -1 N LEU B 215 O LEU B 393 SHEET 3 G 4 ALA B 330 CYS B 337 -1 N CYS B 337 O HIS B 212 SHEET 4 G 4 HIS B 261 ASP B 264 -1 N PHE B 263 O ALA B 332 SHEET 1 H 2 ARG B 282 LYS B 284 0 SHEET 2 H 2 GLU B 290 THR B 292 -1 N ARG B 291 O LEU B 283 SHEET 1 I 3 ILE B 404 ARG B 407 0 SHEET 2 I 3 THR B 441 THR B 445 -1 N VAL B 444 O ILE B 404 SHEET 3 I 3 ARG B 434 GLU B 436 -1 N GLU B 436 O ARG B 443 SHEET 1 J 6 ARG B 567 ARG B 578 0 SHEET 2 J 6 ARG B 580 GLY B 591 -1 N PHE B 590 O ALA B 568 SHEET 3 J 6 HIS B 669 ARG B 674 -1 N LEU B 673 O LEU B 585 SHEET 4 J 6 GLU B 647 ALA B 654 -1 N GLY B 653 O LEU B 670 SHEET 5 J 6 SER B 639 VAL B 644 -1 N VAL B 644 O GLU B 647 SHEET 6 J 6 PHE B 624 ALA B 628 -1 N GLU B 627 O ARG B 641 SHEET 1 K 4 ASP B 729 TYR B 731 0 SHEET 2 K 4 HIS B 740 PHE B 749 -1 N ALA B 744 O ASP B 729 SHEET 3 K 4 ALA B 693 PRO B 702 -1 N VAL B 701 O LYS B 741 SHEET 4 K 4 GLY B 781 THR B 784 -1 N THR B 784 O ASP B 696 SHEET 1 L 2 LEU B 722 LEU B 727 0 SHEET 2 L 2 PHE B 745 PHE B 749 -1 N ARG B 748 O GLU B 723 LINK OE2 GLU A 262 MG MG A 351 1555 1555 2.38 LINK OE1 GLU A 262 MG MG A 351 1555 1555 3.00 LINK MG MG A 351 OE1 GLU B 461 1555 1555 2.37 LINK MG MG A 351 O HOH B 905 1555 1555 1.77 CISPEP 1 PRO A 192 PRO A 193 0 -0.88 CISPEP 2 GLU A 262 PRO A 263 0 0.08 CISPEP 3 GLY B 439 PRO B 440 0 -0.88 CISPEP 4 LEU B 675 PRO B 676 0 -1.43 CISPEP 5 PRO B 734 PRO B 735 0 0.26 SITE 1 AC1 3 GLU A 262 GLU B 461 HOH B 905 CRYST1 176.000 176.000 141.700 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005682 0.003280 0.000000 0.00000 SCALE2 0.000000 0.006561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007057 0.00000