PDB Short entry for 1Q5H HEADER HYDROLASE 07-AUG-03 1Q5H TITLE HUMAN DUTP PYROPHOSPHATASE COMPLEX WITH DUDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUTP PYROPHOSPHATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEM409 KEYWDS DNA REPAIR, ENZYME-DNA INTERACTIONS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.D.MOL,J.M.HARRIS,E.M.MCINTOSH,J.A.TAINER REVDAT 4 16-AUG-23 1Q5H 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1Q5H 1 VERSN REVDAT 2 24-FEB-09 1Q5H 1 VERSN REVDAT 1 19-AUG-03 1Q5H 0 JRNL AUTH C.D.MOL,J.M.HARRIS,E.M.MCINTOSH,J.A.TAINER JRNL TITL HUMAN DUTP PYROPHOSPHATASE: URACIL RECOGNITION BY A BETA JRNL TITL 2 HAIRPIN AND ACTIVE SITES FORMED BY THREE SEPARATE SUBUNITS JRNL REF STRUCTURE V. 4 1077 1996 JRNL REFN ISSN 0969-2126 JRNL PMID 8805593 JRNL DOI 10.1016/S0969-2126(96)00114-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 26946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1435 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.721 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3294 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4458 ; 1.094 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 5.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2524 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1044 ; 0.166 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.133 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1999 ; 0.402 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3190 ; 0.811 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 1.410 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1268 ; 2.384 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1420 36.9580 7.9370 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.0526 REMARK 3 T33: 0.0785 T12: 0.0073 REMARK 3 T13: -0.0304 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.7221 L22: 1.2520 REMARK 3 L33: 3.0613 L12: 0.1805 REMARK 3 L13: 0.3407 L23: 0.1503 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.1075 S13: -0.0295 REMARK 3 S21: -0.2363 S22: -0.0470 S23: 0.1383 REMARK 3 S31: 0.0073 S32: -0.2032 S33: 0.0699 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 136 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8420 25.9840 18.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0106 REMARK 3 T33: 0.0347 T12: 0.0014 REMARK 3 T13: -0.0035 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.6767 L22: 1.7125 REMARK 3 L33: 1.3252 L12: -0.4864 REMARK 3 L13: -0.0489 L23: 0.2524 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: 0.0351 S13: 0.0716 REMARK 3 S21: -0.0429 S22: 0.0147 S23: 0.0504 REMARK 3 S31: -0.0744 S32: -0.0833 S33: 0.0239 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -5 C 136 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7150 41.4870 24.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.0308 REMARK 3 T33: 0.0568 T12: 0.0120 REMARK 3 T13: -0.0132 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.2759 L22: 2.1023 REMARK 3 L33: 1.2795 L12: 0.1507 REMARK 3 L13: -0.1029 L23: 0.1719 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: 0.0394 S13: 0.0515 REMARK 3 S21: -0.1601 S22: -0.0065 S23: 0.0913 REMARK 3 S31: -0.0875 S32: -0.0581 S33: -0.0357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000019940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-96 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.620 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : 0.32300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1DUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1M SODIUM CITRATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.59850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.38300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.59850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.38300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT CONTAINS THE REMARK 300 BIOLOGICALLY RELEVANT TRIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 THR A 128 REMARK 465 GLU A 129 REMARK 465 ARG A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 PHE A 135 REMARK 465 GLY A 136 REMARK 465 SER A 137 REMARK 465 THR A 138 REMARK 465 GLY A 139 REMARK 465 LYS A 140 REMARK 465 ASN A 141 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 SER B 137 REMARK 465 THR B 138 REMARK 465 GLY B 139 REMARK 465 LYS B 140 REMARK 465 ASN B 141 REMARK 465 SER C 137 REMARK 465 THR C 138 REMARK 465 GLY C 139 REMARK 465 LYS C 140 REMARK 465 ASN C 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 32 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 72 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 32 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 72 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP C 32 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP C 72 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 75 -118.09 47.97 REMARK 500 ALA B 75 -121.63 51.37 REMARK 500 TYR B 116 75.01 -117.66 REMARK 500 THR B 128 -129.82 -93.01 REMARK 500 ALA C 75 -119.01 48.59 REMARK 500 ALA C 107 -178.45 -170.13 REMARK 500 TYR C 116 67.45 -119.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 999 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 112 OE1 REMARK 620 2 HOH A1012 O 105.3 REMARK 620 3 GLU B 112 OE1 113.6 107.5 REMARK 620 4 GLU C 112 OE1 112.7 101.3 115.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD A 779 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD B 778 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD C 777 DBREF 1Q5H A 1 141 UNP P33316 DUT_HUMAN 24 164 DBREF 1Q5H B 1 141 UNP P33316 DUT_HUMAN 24 164 DBREF 1Q5H C 1 141 UNP P33316 DUT_HUMAN 24 164 SEQADV 1Q5H HIS A -5 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS A -4 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS A -3 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS A -2 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS A -1 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS A 0 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS B -5 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS B -4 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS B -3 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS B -2 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS B -1 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS B 0 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS C -5 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS C -4 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS C -3 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS C -2 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS C -1 UNP P33316 EXPRESSION TAG SEQADV 1Q5H HIS C 0 UNP P33316 EXPRESSION TAG SEQRES 1 A 147 HIS HIS HIS HIS HIS HIS MET GLN LEU ARG PHE ALA ARG SEQRES 2 A 147 LEU SER GLU HIS ALA THR ALA PRO THR ARG GLY SER ALA SEQRES 3 A 147 ARG ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP TYR SEQRES 4 A 147 THR ILE PRO PRO MET GLU LYS ALA VAL VAL LYS THR ASP SEQRES 5 A 147 ILE GLN ILE ALA LEU PRO SER GLY CYS TYR GLY ARG VAL SEQRES 6 A 147 ALA PRO ARG SER GLY LEU ALA ALA LYS HIS PHE ILE ASP SEQRES 7 A 147 VAL GLY ALA GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 A 147 VAL GLY VAL VAL LEU PHE ASN PHE GLY LYS GLU LYS PHE SEQRES 9 A 147 GLU VAL LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE CYS SEQRES 10 A 147 GLU ARG ILE PHE TYR PRO GLU ILE GLU GLU VAL GLN ALA SEQRES 11 A 147 LEU ASP ASP THR GLU ARG GLY SER GLY GLY PHE GLY SER SEQRES 12 A 147 THR GLY LYS ASN SEQRES 1 B 147 HIS HIS HIS HIS HIS HIS MET GLN LEU ARG PHE ALA ARG SEQRES 2 B 147 LEU SER GLU HIS ALA THR ALA PRO THR ARG GLY SER ALA SEQRES 3 B 147 ARG ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP TYR SEQRES 4 B 147 THR ILE PRO PRO MET GLU LYS ALA VAL VAL LYS THR ASP SEQRES 5 B 147 ILE GLN ILE ALA LEU PRO SER GLY CYS TYR GLY ARG VAL SEQRES 6 B 147 ALA PRO ARG SER GLY LEU ALA ALA LYS HIS PHE ILE ASP SEQRES 7 B 147 VAL GLY ALA GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 B 147 VAL GLY VAL VAL LEU PHE ASN PHE GLY LYS GLU LYS PHE SEQRES 9 B 147 GLU VAL LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE CYS SEQRES 10 B 147 GLU ARG ILE PHE TYR PRO GLU ILE GLU GLU VAL GLN ALA SEQRES 11 B 147 LEU ASP ASP THR GLU ARG GLY SER GLY GLY PHE GLY SER SEQRES 12 B 147 THR GLY LYS ASN SEQRES 1 C 147 HIS HIS HIS HIS HIS HIS MET GLN LEU ARG PHE ALA ARG SEQRES 2 C 147 LEU SER GLU HIS ALA THR ALA PRO THR ARG GLY SER ALA SEQRES 3 C 147 ARG ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP TYR SEQRES 4 C 147 THR ILE PRO PRO MET GLU LYS ALA VAL VAL LYS THR ASP SEQRES 5 C 147 ILE GLN ILE ALA LEU PRO SER GLY CYS TYR GLY ARG VAL SEQRES 6 C 147 ALA PRO ARG SER GLY LEU ALA ALA LYS HIS PHE ILE ASP SEQRES 7 C 147 VAL GLY ALA GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 C 147 VAL GLY VAL VAL LEU PHE ASN PHE GLY LYS GLU LYS PHE SEQRES 9 C 147 GLU VAL LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE CYS SEQRES 10 C 147 GLU ARG ILE PHE TYR PRO GLU ILE GLU GLU VAL GLN ALA SEQRES 11 C 147 LEU ASP ASP THR GLU ARG GLY SER GLY GLY PHE GLY SER SEQRES 12 C 147 THR GLY LYS ASN HET MG A 999 1 HET DUD A 779 24 HET DUD B 778 24 HET DUD C 777 24 HETNAM MG MAGNESIUM ION HETNAM DUD DEOXYURIDINE-5'-DIPHOSPHATE FORMUL 4 MG MG 2+ FORMUL 5 DUD 3(C9 H14 N2 O11 P2) FORMUL 8 HOH *238(H2 O) HELIX 1 1 ARG A 62 PHE A 70 1 9 HELIX 2 2 ARG B 62 PHE B 70 1 9 HELIX 3 3 ARG C 62 PHE C 70 1 9 SHEET 1 A 3 ILE A 47 ALA A 50 0 SHEET 2 A 3 GLN A 2 ARG A 7 -1 N ARG A 4 O ALA A 50 SHEET 3 A 3 GLU B 118 GLU B 121 1 O GLU B 118 N LEU A 3 SHEET 1 B 4 TYR A 25 TYR A 28 0 SHEET 2 B 4 ARG A 105 ARG A 113 -1 O LEU A 109 N TYR A 25 SHEET 3 B 4 CYS A 55 ALA A 60 -1 N ALA A 60 O GLN A 108 SHEET 4 B 4 VAL A 77 ILE A 78 -1 O ILE A 78 N GLY A 57 SHEET 1 C 2 TYR A 33 ILE A 35 0 SHEET 2 C 2 PHE A 98 VAL A 100 -1 O VAL A 100 N TYR A 33 SHEET 1 D 3 GLU A 39 LYS A 44 0 SHEET 2 D 3 GLY A 87 ASN A 92 -1 O VAL A 88 N VAL A 43 SHEET 3 D 3 ILE A 71 GLY A 74 -1 N ASP A 72 O PHE A 91 SHEET 1 E 3 GLU A 118 GLU A 121 0 SHEET 2 E 3 GLN C 2 ARG C 7 1 O LEU C 3 N GLU A 118 SHEET 3 E 3 ILE C 47 ALA C 50 -1 O ALA C 50 N ARG C 4 SHEET 1 F 3 ILE B 47 ALA B 50 0 SHEET 2 F 3 LEU B 3 ARG B 7 -1 N ARG B 4 O ALA B 50 SHEET 3 F 3 ILE C 119 GLU C 121 1 O GLU C 120 N LEU B 3 SHEET 1 G 4 GLY B 24 TYR B 28 0 SHEET 2 G 4 ARG B 105 ARG B 113 -1 O ALA B 107 N LEU B 27 SHEET 3 G 4 CYS B 55 ALA B 60 -1 N ALA B 60 O GLN B 108 SHEET 4 G 4 VAL B 77 ILE B 78 -1 O ILE B 78 N GLY B 57 SHEET 1 H 2 TYR B 33 ILE B 35 0 SHEET 2 H 2 PHE B 98 VAL B 100 -1 O VAL B 100 N TYR B 33 SHEET 1 I 3 GLU B 39 LYS B 44 0 SHEET 2 I 3 GLY B 87 ASN B 92 -1 O VAL B 88 N VAL B 43 SHEET 3 I 3 ILE B 71 GLY B 74 -1 N ASP B 72 O PHE B 91 SHEET 1 J 4 TYR C 25 TYR C 28 0 SHEET 2 J 4 ARG C 105 ARG C 113 -1 O LEU C 109 N TYR C 25 SHEET 3 J 4 CYS C 55 ALA C 60 -1 N ALA C 60 O GLN C 108 SHEET 4 J 4 VAL C 77 ILE C 78 -1 O ILE C 78 N GLY C 57 SHEET 1 K 2 TYR C 33 ILE C 35 0 SHEET 2 K 2 PHE C 98 VAL C 100 -1 O VAL C 100 N TYR C 33 SHEET 1 L 3 GLU C 39 LYS C 44 0 SHEET 2 L 3 GLY C 87 ASN C 92 -1 O VAL C 88 N VAL C 43 SHEET 3 L 3 ILE C 71 GLY C 74 -1 N ASP C 72 O PHE C 91 LINK OE1 GLU A 112 MG MG A 999 1555 1555 2.31 LINK MG MG A 999 O HOH A1012 1555 1555 2.27 LINK MG MG A 999 OE1 GLU B 112 1555 1555 2.19 LINK MG MG A 999 OE1 GLU C 112 1555 1555 2.27 SITE 1 AC1 4 GLU A 112 HOH A1012 GLU B 112 GLU C 112 SITE 1 AC2 17 ALA A 75 GLY A 76 VAL A 77 ILE A 78 SITE 2 AC2 17 ASP A 79 TYR A 82 GLY A 87 HOH A1008 SITE 3 AC2 17 HOH A1043 HOH A1046 GLU B 129 GLY B 134 SITE 4 AC2 17 PHE B 135 GLY B 136 ARG C 62 SER C 63 SITE 5 AC2 17 GLY C 64 SITE 1 AC3 16 ARG A 62 SER A 63 GLY A 64 ALA B 75 SITE 2 AC3 16 GLY B 76 VAL B 77 ILE B 78 ASP B 79 SITE 3 AC3 16 TYR B 82 GLY B 87 HOH B 801 HOH B 846 SITE 4 AC3 16 ARG C 130 GLY C 134 PHE C 135 GLY C 136 SITE 1 AC4 15 ARG B 62 SER B 63 GLY B 64 ARG B 105 SITE 2 AC4 15 ALA C 75 GLY C 76 VAL C 77 ILE C 78 SITE 3 AC4 15 ASP C 79 TYR C 82 GLY C 87 HOH C 796 SITE 4 AC4 15 HOH C 814 HOH C 816 HOH C 844 CRYST1 73.197 110.766 53.243 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013662 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018782 0.00000