PDB Short entry for 1Q6H HEADER ISOMERASE 13-AUG-03 1Q6H TITLE CRYSTAL STRUCTURE OF A TRUNCATED FORM OF FKPA FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPIASE, ROTAMASE; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FKPA OR B3347; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MC4100 DERIVATIVE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTFKPDCT KEYWDS CHAPERONE, PEPTIDYL-PROLYL ISOMERASE, HEAT SHOCK PROTEIN, FKBP KEYWDS 2 FAMILY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.A.SAUL,J.-P.ARIE,B.VULLIEZ-LE NORMAND,R.KAHN,J.-M.BETTON, AUTHOR 2 G.A.BENTLEY REVDAT 4 03-APR-24 1Q6H 1 SEQADV LINK REVDAT 3 13-JUL-11 1Q6H 1 VERSN REVDAT 2 24-FEB-09 1Q6H 1 VERSN REVDAT 1 13-JAN-04 1Q6H 0 JRNL AUTH F.A.SAUL,J.P.ARIE,B.VULLIEZ-LE NORMAND,R.KAHN,J.M.BETTON, JRNL AUTH 2 G.A.BENTLEY JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF FKPA FROM ESCHERICHIA JRNL TITL 2 COLI, A CIS/TRANS PEPTIDYL-PROLYL ISOMERASE WITH CHAPERONE JRNL TITL 3 ACTIVITY. JRNL REF J.MOL.BIOL. V. 335 595 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 14672666 JRNL DOI 10.1016/J.JMB.2003.10.056 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 30278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 965 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 40 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 789 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3224 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.07000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.655 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3278 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2990 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4398 ; 1.358 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7060 ; 0.676 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 3.749 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 668 ;14.345 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 482 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3630 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 578 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 741 ; 0.231 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2826 ; 0.191 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 375 ; 0.183 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.039 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.229 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.220 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.248 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2078 ; 1.025 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3316 ; 1.678 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1200 ; 2.042 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1082 ; 3.321 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4939 56.1900 38.7821 REMARK 3 T TENSOR REMARK 3 T11: 0.1256 T22: 0.0923 REMARK 3 T33: 0.1299 T12: 0.0071 REMARK 3 T13: 0.0411 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.9943 L22: 1.0198 REMARK 3 L33: 2.7060 L12: 0.9640 REMARK 3 L13: 2.4475 L23: 1.2664 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.1859 S13: -0.0052 REMARK 3 S21: -0.0874 S22: 0.0460 S23: -0.1169 REMARK 3 S31: -0.1022 S32: 0.2253 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2819 39.8118 18.0948 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1218 REMARK 3 T33: 0.1551 T12: 0.0068 REMARK 3 T13: -0.0125 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 14.0189 L22: 2.8832 REMARK 3 L33: 16.2720 L12: -6.1326 REMARK 3 L13: -15.2197 L23: 6.7532 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: 0.1232 S13: 0.1786 REMARK 3 S21: 0.0428 S22: -0.0588 S23: 0.0126 REMARK 3 S31: 0.1090 S32: -0.2545 S33: -0.0359 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8972 24.7225 12.9249 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.0263 REMARK 3 T33: 0.0758 T12: -0.0187 REMARK 3 T13: -0.0081 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.5498 L22: 0.8898 REMARK 3 L33: 2.4147 L12: -0.4771 REMARK 3 L13: 0.2335 L23: -0.4638 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: -0.1342 S13: 0.0817 REMARK 3 S21: 0.1477 S22: -0.0182 S23: -0.0516 REMARK 3 S31: -0.0944 S32: 0.0718 S33: 0.0496 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9520 56.4132 44.0007 REMARK 3 T TENSOR REMARK 3 T11: 0.1205 T22: 0.0330 REMARK 3 T33: 0.1572 T12: 0.0536 REMARK 3 T13: 0.0404 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 2.5150 L22: 0.5825 REMARK 3 L33: 4.9677 L12: 0.6122 REMARK 3 L13: 1.5865 L23: 0.8543 REMARK 3 S TENSOR REMARK 3 S11: -0.1062 S12: 0.0827 S13: 0.0331 REMARK 3 S21: -0.0926 S22: -0.0400 S23: 0.0523 REMARK 3 S31: -0.0703 S32: -0.1920 S33: 0.1462 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7732 43.9323 66.3862 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.1236 REMARK 3 T33: 0.1761 T12: -0.0096 REMARK 3 T13: 0.0167 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 10.3545 L22: 7.0525 REMARK 3 L33: 13.9525 L12: 8.7471 REMARK 3 L13: -12.2807 L23: -10.2100 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: -0.0982 S13: -0.2506 REMARK 3 S21: 0.1653 S22: -0.2890 S23: -0.2351 REMARK 3 S31: -0.0976 S32: 0.2114 S33: 0.2142 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 113 B 224 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6761 28.0360 68.6500 REMARK 3 T TENSOR REMARK 3 T11: 0.1380 T22: 0.0254 REMARK 3 T33: 0.0966 T12: 0.0090 REMARK 3 T13: 0.0015 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 3.0442 L22: 1.2328 REMARK 3 L33: 1.9569 L12: 1.0884 REMARK 3 L13: 0.0513 L23: 0.2664 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: 0.1999 S13: 0.1754 REMARK 3 S21: -0.2750 S22: 0.0148 S23: 0.0490 REMARK 3 S31: -0.2506 S32: -0.0412 S33: 0.0260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Q6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000019976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97880 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31307 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.22300 REMARK 200 R SYM FOR SHELL (I) : 0.20600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: FKPA (C-DOMAIN 95-226) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000, SODIUM ACETATE, PH 4.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.51500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER (CHAINS A, B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 ALA A 14 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 ALA B 7 REMARK 465 THR B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 ASP B 11 REMARK 465 SER B 12 REMARK 465 LYS B 13 REMARK 465 ALA B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 74 NE2 GLN A 78 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 232 O HOH B 450 4556 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 64 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 98 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 19 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 95 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 217 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 199 -116.54 -131.89 REMARK 500 ASN B 158 108.97 -169.23 REMARK 500 ALA B 199 -118.18 -133.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q6I RELATED DB: PDB REMARK 900 TRUNCATED FKPA FROM E. COLI: COMPLEX WITH IMMUNOSUPPRESSOR FK506 REMARK 900 RELATED ID: 1Q6U RELATED DB: PDB REMARK 900 FKPA FROM E. COLI DBREF 1Q6H A 1 224 UNP P45523 FKBA_ECOLI 26 249 DBREF 1Q6H B 1 224 UNP P45523 FKBA_ECOLI 26 249 SEQADV 1Q6H MSE A 35 UNP P45523 MET 60 MODIFIED RESIDUE SEQADV 1Q6H MSE A 92 UNP P45523 MET 117 MODIFIED RESIDUE SEQADV 1Q6H MSE B 35 UNP P45523 MET 60 MODIFIED RESIDUE SEQADV 1Q6H MSE B 92 UNP P45523 MET 117 MODIFIED RESIDUE SEQRES 1 A 224 ALA GLU ALA ALA LYS PRO ALA THR ALA ALA ASP SER LYS SEQRES 2 A 224 ALA ALA PHE LYS ASN ASP ASP GLN LYS SER ALA TYR ALA SEQRES 3 A 224 LEU GLY ALA SER LEU GLY ARG TYR MSE GLU ASN SER LEU SEQRES 4 A 224 LYS GLU GLN GLU LYS LEU GLY ILE LYS LEU ASP LYS ASP SEQRES 5 A 224 GLN LEU ILE ALA GLY VAL GLN ASP ALA PHE ALA ASP LYS SEQRES 6 A 224 SER LYS LEU SER ASP GLN GLU ILE GLU GLN THR LEU GLN SEQRES 7 A 224 ALA PHE GLU ALA ARG VAL LYS SER SER ALA GLN ALA LYS SEQRES 8 A 224 MSE GLU LYS ASP ALA ALA ASP ASN GLU ALA LYS GLY LYS SEQRES 9 A 224 GLU TYR ARG GLU LYS PHE ALA LYS GLU LYS GLY VAL LYS SEQRES 10 A 224 THR SER SER THR GLY LEU VAL TYR GLN VAL VAL GLU ALA SEQRES 11 A 224 GLY LYS GLY GLU ALA PRO LYS ASP SER ASP THR VAL VAL SEQRES 12 A 224 VAL ASN TYR LYS GLY THR LEU ILE ASP GLY LYS GLU PHE SEQRES 13 A 224 ASP ASN SER TYR THR ARG GLY GLU PRO LEU SER PHE ARG SEQRES 14 A 224 LEU ASP GLY VAL ILE PRO GLY TRP THR GLU GLY LEU LYS SEQRES 15 A 224 ASN ILE LYS LYS GLY GLY LYS ILE LYS LEU VAL ILE PRO SEQRES 16 A 224 PRO GLU LEU ALA TYR GLY LYS ALA GLY VAL PRO GLY ILE SEQRES 17 A 224 PRO PRO ASN SER THR LEU VAL PHE ASP VAL GLU LEU LEU SEQRES 18 A 224 ASP VAL LYS SEQRES 1 B 224 ALA GLU ALA ALA LYS PRO ALA THR ALA ALA ASP SER LYS SEQRES 2 B 224 ALA ALA PHE LYS ASN ASP ASP GLN LYS SER ALA TYR ALA SEQRES 3 B 224 LEU GLY ALA SER LEU GLY ARG TYR MSE GLU ASN SER LEU SEQRES 4 B 224 LYS GLU GLN GLU LYS LEU GLY ILE LYS LEU ASP LYS ASP SEQRES 5 B 224 GLN LEU ILE ALA GLY VAL GLN ASP ALA PHE ALA ASP LYS SEQRES 6 B 224 SER LYS LEU SER ASP GLN GLU ILE GLU GLN THR LEU GLN SEQRES 7 B 224 ALA PHE GLU ALA ARG VAL LYS SER SER ALA GLN ALA LYS SEQRES 8 B 224 MSE GLU LYS ASP ALA ALA ASP ASN GLU ALA LYS GLY LYS SEQRES 9 B 224 GLU TYR ARG GLU LYS PHE ALA LYS GLU LYS GLY VAL LYS SEQRES 10 B 224 THR SER SER THR GLY LEU VAL TYR GLN VAL VAL GLU ALA SEQRES 11 B 224 GLY LYS GLY GLU ALA PRO LYS ASP SER ASP THR VAL VAL SEQRES 12 B 224 VAL ASN TYR LYS GLY THR LEU ILE ASP GLY LYS GLU PHE SEQRES 13 B 224 ASP ASN SER TYR THR ARG GLY GLU PRO LEU SER PHE ARG SEQRES 14 B 224 LEU ASP GLY VAL ILE PRO GLY TRP THR GLU GLY LEU LYS SEQRES 15 B 224 ASN ILE LYS LYS GLY GLY LYS ILE LYS LEU VAL ILE PRO SEQRES 16 B 224 PRO GLU LEU ALA TYR GLY LYS ALA GLY VAL PRO GLY ILE SEQRES 17 B 224 PRO PRO ASN SER THR LEU VAL PHE ASP VAL GLU LEU LEU SEQRES 18 B 224 ASP VAL LYS MODRES 1Q6H MSE A 35 MET SELENOMETHIONINE MODRES 1Q6H MSE A 92 MET SELENOMETHIONINE MODRES 1Q6H MSE B 35 MET SELENOMETHIONINE MODRES 1Q6H MSE B 92 MET SELENOMETHIONINE HET MSE A 35 12 HET MSE A 92 8 HET MSE B 35 12 HET MSE B 92 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *468(H2 O) HELIX 1 1 ASN A 18 LYS A 44 1 27 HELIX 2 2 ASP A 50 ALA A 63 1 14 HELIX 3 3 SER A 69 GLU A 113 1 45 HELIX 4 4 TYR A 160 GLY A 163 5 4 HELIX 5 5 ASP A 171 VAL A 173 5 3 HELIX 6 6 ILE A 174 LEU A 181 1 8 HELIX 7 7 LYS A 182 ILE A 184 5 3 HELIX 8 8 PRO A 195 ALA A 199 5 5 HELIX 9 9 ASN B 18 LYS B 44 1 27 HELIX 10 10 ASP B 50 ALA B 63 1 14 HELIX 11 11 SER B 69 GLU B 113 1 45 HELIX 12 12 TYR B 160 GLY B 163 5 4 HELIX 13 13 ASP B 171 VAL B 173 5 3 HELIX 14 14 ILE B 174 LEU B 181 1 8 HELIX 15 15 LYS B 182 ILE B 184 5 3 HELIX 16 16 PRO B 195 ALA B 199 5 5 SHEET 1 A 6 VAL A 116 THR A 118 0 SHEET 2 A 6 VAL A 124 GLU A 129 -1 O TYR A 125 N LYS A 117 SHEET 3 A 6 LYS A 189 ILE A 194 -1 O VAL A 193 N VAL A 124 SHEET 4 A 6 LEU A 214 LYS A 224 -1 O LEU A 214 N ILE A 194 SHEET 5 A 6 THR A 141 LEU A 150 -1 N THR A 141 O LYS A 224 SHEET 6 A 6 GLU A 155 ASN A 158 -1 O ASP A 157 N GLY A 148 SHEET 1 B 6 VAL A 116 THR A 118 0 SHEET 2 B 6 VAL A 124 GLU A 129 -1 O TYR A 125 N LYS A 117 SHEET 3 B 6 LYS A 189 ILE A 194 -1 O VAL A 193 N VAL A 124 SHEET 4 B 6 LEU A 214 LYS A 224 -1 O LEU A 214 N ILE A 194 SHEET 5 B 6 THR A 141 LEU A 150 -1 N THR A 141 O LYS A 224 SHEET 6 B 6 LEU A 166 ARG A 169 -1 O PHE A 168 N VAL A 142 SHEET 1 C 6 VAL B 116 THR B 118 0 SHEET 2 C 6 VAL B 124 GLU B 129 -1 O TYR B 125 N LYS B 117 SHEET 3 C 6 LYS B 189 ILE B 194 -1 O VAL B 193 N VAL B 124 SHEET 4 C 6 LEU B 214 LYS B 224 -1 O LEU B 214 N ILE B 194 SHEET 5 C 6 THR B 141 LEU B 150 -1 N THR B 141 O LYS B 224 SHEET 6 C 6 GLU B 155 ASN B 158 -1 O ASP B 157 N GLY B 148 SHEET 1 D 6 VAL B 116 THR B 118 0 SHEET 2 D 6 VAL B 124 GLU B 129 -1 O TYR B 125 N LYS B 117 SHEET 3 D 6 LYS B 189 ILE B 194 -1 O VAL B 193 N VAL B 124 SHEET 4 D 6 LEU B 214 LYS B 224 -1 O LEU B 214 N ILE B 194 SHEET 5 D 6 THR B 141 LEU B 150 -1 N THR B 141 O LYS B 224 SHEET 6 D 6 LEU B 166 ARG B 169 -1 O PHE B 168 N VAL B 142 LINK C TYR A 34 N MSE A 35 1555 1555 1.32 LINK C MSE A 35 N GLU A 36 1555 1555 1.33 LINK C LYS A 91 N MSE A 92 1555 1555 1.32 LINK C MSE A 92 N GLU A 93 1555 1555 1.33 LINK C TYR B 34 N MSE B 35 1555 1555 1.32 LINK C MSE B 35 N GLU B 36 1555 1555 1.33 LINK C LYS B 91 N MSE B 92 1555 1555 1.33 LINK C MSE B 92 N GLU B 93 1555 1555 1.32 CRYST1 37.030 85.230 160.740 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027005 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006221 0.00000