PDB Short entry for 1Q7X HEADER HYDROLASE 20-AUG-03 1Q7X TITLE SOLUTION STRUCTURE OF THE ALTERNATIVELY SPLICED PDZ2 DOMAIN (PDZ2B) OF TITLE 2 PTP-BAS (HPTP1E) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ2B DOMAIN OF PTP-BAS (HPTP1E); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTP1E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS PHOSPHATASE, STRUCTURAL PROTEOMICS IN EUROPE, SPINE, STRUCTURAL KEYWDS 2 GENOMICS, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KACHEL,K.S.ERDMANN,W.KREMER,P.WOLFF,W.GRONWALD,R.HEUMANN, AUTHOR 2 H.R.KALBITZER,STRUCTURAL PROTEOMICS IN EUROPE (SPINE) REVDAT 3 02-MAR-22 1Q7X 1 REMARK SEQADV REVDAT 2 24-FEB-09 1Q7X 1 VERSN REVDAT 1 02-DEC-03 1Q7X 0 JRNL AUTH N.KACHEL,K.S.ERDMANN,W.KREMER,P.WOLFF,W.GRONWALD,R.HEUMANN, JRNL AUTH 2 H.R.KALBITZER JRNL TITL STRUCTURE DETERMINATION AND LIGAND INTERACTIONS OF THE PDZ2B JRNL TITL 2 DOMAIN OF PTP-BAS (HPTP1E): SPLICING INDUCED MODULATION OF JRNL TITL 3 LIGAND SPECIFICITY. JRNL REF J.MOL.BIOL. V. 334 143 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 14596806 JRNL DOI 10.1016/J.JMB.2003.09.026 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER ET AL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1648 NOE REMARK 3 -DERIVED DISTANCE RESTRAINTS AND 80 TORSION ANGLE RESTRAINTS REMARK 3 ACQUIRED BY TALOS REMARK 4 REMARK 4 1Q7X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000020028. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50MM SODIUM PHOSPHATE, 150MM REMARK 210 SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM PDZ2B U-15N, 13C; 50MM REMARK 210 PHOSPHATE BUFFER WITH 150MM REMARK 210 SODIUM CHLORIDE; 2MM PDZ2B U-15N; REMARK 210 50MM PHOSPHATE BUFFER WITH REMARK 210 150MM SODIUM CHLORIDE; 2MM PDZ2B REMARK 210 UNLABELED; 50MM PHOSPHATE BUFFER REMARK 210 WITH 150MM SODIUM CHLORIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, AUREMOL 1.1, CNS REMARK 210 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 46 H GLY A 64 1.30 REMARK 500 O ALA A 69 HD23 LEU A 96 1.48 REMARK 500 O LYS A 81 HB2 GLU A 85 1.49 REMARK 500 H VAL A 70 O VAL A 73 1.51 REMARK 500 O PHE A 11 H LEU A 98 1.53 REMARK 500 O GLY A 23 H ILE A 50 1.58 REMARK 500 O LEU A 22 N ALA A 55 2.14 REMARK 500 O THR A 79 N LYS A 81 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 PHE A 30 CB PHE A 30 CG -0.128 REMARK 500 2 PHE A 30 CB PHE A 30 CG -0.128 REMARK 500 3 PHE A 30 CB PHE A 30 CG -0.128 REMARK 500 4 PHE A 30 CB PHE A 30 CG -0.110 REMARK 500 5 PHE A 30 CB PHE A 30 CG -0.112 REMARK 500 6 PHE A 30 CB PHE A 30 CG -0.112 REMARK 500 7 PHE A 30 CB PHE A 30 CG -0.127 REMARK 500 8 PHE A 30 CB PHE A 30 CG -0.112 REMARK 500 9 PHE A 30 CB PHE A 30 CG -0.111 REMARK 500 10 PHE A 30 CB PHE A 30 CG -0.110 REMARK 500 11 PHE A 30 CB PHE A 30 CG -0.126 REMARK 500 12 PHE A 30 CB PHE A 30 CG -0.111 REMARK 500 13 PHE A 30 CB PHE A 30 CG -0.128 REMARK 500 14 PHE A 30 CB PHE A 30 CG -0.112 REMARK 500 15 PHE A 30 CB PHE A 30 CG -0.112 REMARK 500 16 PHE A 30 CB PHE A 30 CG -0.111 REMARK 500 17 PHE A 30 CB PHE A 30 CG -0.111 REMARK 500 18 PHE A 30 CB PHE A 30 CG -0.112 REMARK 500 19 PHE A 30 CB PHE A 30 CG -0.126 REMARK 500 20 PHE A 30 CB PHE A 30 CG -0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 PHE A 30 CB - CG - CD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 4 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 5 PHE A 30 CB - CG - CD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 5 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 6 PHE A 30 CB - CG - CD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 6 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 8 PHE A 30 CB - CG - CD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 8 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 9 PHE A 30 CB - CG - CD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 9 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 10 PHE A 30 CB - CG - CD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 10 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 12 PHE A 30 CB - CG - CD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 12 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 14 PHE A 30 CB - CG - CD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 14 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 15 PHE A 30 CB - CG - CD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 15 PHE A 30 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 16 PHE A 30 CB - CG - CD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 16 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 17 PHE A 30 CB - CG - CD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 17 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 18 PHE A 30 CB - CG - CD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 18 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 20 PHE A 30 CB - CG - CD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 20 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 9 -138.81 174.85 REMARK 500 1 LYS A 17 91.26 -41.35 REMARK 500 1 ASN A 18 -58.06 -135.87 REMARK 500 1 SER A 21 35.28 -166.12 REMARK 500 1 LEU A 22 179.57 167.41 REMARK 500 1 LYS A 32 43.89 179.32 REMARK 500 1 VAL A 35 -140.52 160.35 REMARK 500 1 ASN A 36 22.80 -144.60 REMARK 500 1 THR A 37 -54.68 -1.71 REMARK 500 1 SER A 38 54.98 178.02 REMARK 500 1 HIS A 41 -31.45 -138.83 REMARK 500 1 ALA A 48 -143.25 82.55 REMARK 500 1 ILE A 50 163.42 -43.90 REMARK 500 1 ALA A 54 -112.87 46.11 REMARK 500 1 ARG A 60 57.15 -119.74 REMARK 500 1 HIS A 62 108.91 132.10 REMARK 500 1 ASP A 65 -168.71 -174.07 REMARK 500 1 ASN A 71 15.72 49.09 REMARK 500 1 GLU A 76 37.46 -92.65 REMARK 500 1 THR A 79 -100.14 22.93 REMARK 500 1 HIS A 80 -79.97 18.05 REMARK 500 1 THR A 90 158.15 -40.03 REMARK 500 1 VAL A 93 108.82 171.76 REMARK 500 1 GLN A 102 -171.16 -57.58 REMARK 500 1 SER A 103 -69.23 -136.94 REMARK 500 1 THR A 105 -170.23 -61.78 REMARK 500 1 LYS A 107 -46.44 -139.92 REMARK 500 2 SER A 2 120.30 62.78 REMARK 500 2 PRO A 7 176.81 -59.07 REMARK 500 2 ASP A 9 -141.15 173.28 REMARK 500 2 LYS A 17 91.32 -41.86 REMARK 500 2 ASN A 18 -56.96 -136.65 REMARK 500 2 SER A 21 36.81 -168.68 REMARK 500 2 LEU A 22 179.29 166.79 REMARK 500 2 LYS A 32 40.33 -146.93 REMARK 500 2 VAL A 35 -154.42 160.60 REMARK 500 2 ASN A 36 23.52 -141.70 REMARK 500 2 THR A 37 -55.06 1.40 REMARK 500 2 SER A 38 37.31 -176.49 REMARK 500 2 VAL A 39 -150.54 -132.39 REMARK 500 2 ALA A 48 -143.75 81.61 REMARK 500 2 ILE A 50 161.32 -41.29 REMARK 500 2 ALA A 54 -110.74 40.03 REMARK 500 2 HIS A 62 104.91 128.88 REMARK 500 2 ASP A 65 -168.24 -174.08 REMARK 500 2 ASN A 71 17.74 43.64 REMARK 500 2 GLU A 76 34.50 -93.02 REMARK 500 2 THR A 79 -99.52 20.41 REMARK 500 2 HIS A 80 -79.91 17.78 REMARK 500 2 THR A 90 176.57 -46.21 REMARK 500 REMARK 500 THIS ENTRY HAS 560 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2 RELATED DB: TARGETDB DBREF 1Q7X A 1 108 UNP Q12923 PTN13_HUMAN 1357 1464 SEQADV 1Q7X GLY A 1 UNP Q12923 SER 1357 CLONING ARTIFACT SEQRES 1 A 108 GLY SER SER PRO PRO LYS PRO GLY ASP ILE PHE GLU VAL SEQRES 2 A 108 GLU LEU ALA LYS ASN ASP ASN SER LEU GLY ILE SER VAL SEQRES 3 A 108 THR VAL LEU PHE ASP LYS GLY GLY VAL ASN THR SER VAL SEQRES 4 A 108 ARG HIS GLY GLY ILE TYR VAL LYS ALA VAL ILE PRO GLN SEQRES 5 A 108 GLY ALA ALA GLU SER ASP GLY ARG ILE HIS LYS GLY ASP SEQRES 6 A 108 ARG VAL LEU ALA VAL ASN GLY VAL SER LEU GLU GLY ALA SEQRES 7 A 108 THR HIS LYS GLN ALA VAL GLU THR LEU ARG ASN THR GLY SEQRES 8 A 108 GLN VAL VAL HIS LEU LEU LEU GLU LYS GLY GLN SER PRO SEQRES 9 A 108 THR SER LYS GLU HELIX 1 1 ALA A 54 GLY A 59 1 6 HELIX 2 2 LYS A 81 THR A 90 1 10 SHEET 1 A 4 ILE A 10 ALA A 16 0 SHEET 2 A 4 VAL A 93 GLU A 99 -1 O LEU A 98 N PHE A 11 SHEET 3 A 4 ARG A 66 VAL A 70 -1 N ALA A 69 O LEU A 97 SHEET 4 A 4 VAL A 73 SER A 74 -1 O VAL A 73 N VAL A 70 SHEET 1 B 2 ILE A 24 VAL A 26 0 SHEET 2 B 2 VAL A 46 VAL A 49 -1 O LYS A 47 N SER A 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000