PDB Short entry for 1Q8Y HEADER TRANSFERASE 22-AUG-03 1Q8Y TITLE THE STRUCTURE OF THE YEAST SR PROTEIN KINASE, SKY1P, WITH BOUND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SR PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SKY1PDELTAN(137)DELTAS; COMPND 5 EC: 2.7.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SKY1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOLEN,J.NGO,S.CHAKRABARTI,D.VU,J.A.ADAMS,G.GHOSH REVDAT 4 14-FEB-24 1Q8Y 1 REMARK LINK REVDAT 3 02-AUG-17 1Q8Y 1 SOURCE REMARK REVDAT 2 24-FEB-09 1Q8Y 1 VERSN REVDAT 1 23-SEP-03 1Q8Y 0 JRNL AUTH B.NOLEN,J.NGO,S.CHAKRABARTI,D.VU,J.A.ADAMS,G.GHOSH JRNL TITL NUCLEOTIDE-INDUCED CONFORMATIONAL CHANGES IN THE JRNL TITL 2 SACCHAROMYCES CEREVISIAE SR PROTEIN KINASE, SKY1P, REVEALED JRNL TITL 3 BY X-RAY CRYSTALLOGRAPHY JRNL REF BIOCHEMISTRY V. 42 9575 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12911299 JRNL DOI 10.1021/BI0344331 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 47002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2337 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4314 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 230 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40000 REMARK 3 B22 (A**2) : -3.63000 REMARK 3 B33 (A**2) : 2.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 44.98 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIGAND_2.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : LIGAND_2.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000020065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 94 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 39.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M (NH4)2SO4, 100MM NAACETATE PH REMARK 280 4.5, 15% ETHYLENE GLYCOL. CRYSTALS THEN DIALYZED INTO 30% PEG REMARK 280 400 AND 100MM NAACETATE PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.78850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.89300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.32650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.89300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.78850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.32650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 138 REMARK 465 TYR A 139 REMARK 465 ARG A 140 REMARK 465 PRO A 141 REMARK 465 GLY A 142 REMARK 465 GLY A 143 REMARK 465 GLU A 605 REMARK 465 PRO A 606 REMARK 465 ASP A 607 REMARK 465 GLU A 608 REMARK 465 GLY A 609 REMARK 465 HIS A 610 REMARK 465 SER A 611 REMARK 465 TYR A 612 REMARK 465 THR A 613 REMARK 465 ARG A 647 REMARK 465 GLY A 648 REMARK 465 ASP A 738 REMARK 465 HIS A 739 REMARK 465 LYS A 740 REMARK 465 ARG A 741 REMARK 465 HIS A 742 REMARK 465 ASP B 138 REMARK 465 TYR B 139 REMARK 465 ARG B 140 REMARK 465 PRO B 141 REMARK 465 GLY B 142 REMARK 465 GLY B 143 REMARK 465 TYR B 144 REMARK 465 HIS B 145 REMARK 465 TRP B 166 REMARK 465 GLY B 167 REMARK 465 HIS B 168 REMARK 465 ASP B 738 REMARK 465 HIS B 739 REMARK 465 LYS B 740 REMARK 465 ARG B 741 REMARK 465 HIS B 742 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 144 OH REMARK 470 TRP A 166 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 166 CZ3 CH2 REMARK 470 HIS A 168 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 614 CG CD CE NZ REMARK 470 LEU A 649 CG CD1 CD2 REMARK 470 ASN A 652 CG OD1 ND2 REMARK 470 PHE B 169 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 647 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 713 OE1 GLU B 714 2654 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 154 72.15 47.84 REMARK 500 SER A 170 -168.75 -175.46 REMARK 500 HIS A 262 19.86 50.97 REMARK 500 THR A 293 -6.61 71.18 REMARK 500 ASP A 294 50.19 -143.50 REMARK 500 ASP A 550 80.87 50.32 REMARK 500 GLU A 559 91.68 -161.03 REMARK 500 GLN A 566 152.12 63.08 REMARK 500 ARG A 568 -76.03 -9.03 REMARK 500 ASN A 645 174.64 -44.76 REMARK 500 MET A 712 21.33 -142.01 REMARK 500 TYR A 723 -3.11 75.93 REMARK 500 LYS B 154 70.01 49.57 REMARK 500 SER B 170 -179.61 -171.19 REMARK 500 ASP B 230 161.52 179.31 REMARK 500 TYR B 260 32.28 -99.94 REMARK 500 GLU B 261 47.92 36.43 REMARK 500 THR B 293 -7.87 75.59 REMARK 500 ASP B 294 53.35 -142.35 REMARK 500 ASP B 550 83.35 53.01 REMARK 500 GLU B 559 91.83 -161.69 REMARK 500 GLN B 566 152.57 62.90 REMARK 500 ARG B 568 -79.70 -16.43 REMARK 500 SER B 654 -86.24 -88.90 REMARK 500 TRP B 659 89.20 -150.38 REMARK 500 MET B 712 18.22 -142.77 REMARK 500 TYR B 723 -6.79 77.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 809 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 299 OD1 REMARK 620 2 ASP A 550 OD2 90.5 REMARK 620 3 ADP A 810 O1B 165.6 90.9 REMARK 620 4 ADP A 810 O2A 95.1 84.1 70.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADE B 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q8Z RELATED DB: PDB REMARK 900 RELATED ID: 1Q97 RELATED DB: PDB REMARK 900 RELATED ID: 1Q99 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 137 AMINO ACIDS TRUNCATED FROM N-TERMINUS, REMARK 999 RESIDUES 305-538 WERE DELETED AND REPLACED WITH VAL-ASP DBREF 1Q8Y A 138 304 UNP Q03656 SKY1_YEAST 138 304 DBREF 1Q8Y A 539 742 UNP Q03656 KM65_YEAST 539 742 DBREF 1Q8Y B 138 304 UNP Q03656 SKY1_YEAST 138 304 DBREF 1Q8Y B 539 742 UNP Q03656 KM65_YEAST 539 742 SEQADV 1Q8Y VAL A 305 UNP Q03656 SEE REMARK 999 SEQADV 1Q8Y ASP A 306 UNP Q03656 SEE REMARK 999 SEQADV 1Q8Y VAL B 305 UNP Q03656 SEE REMARK 999 SEQADV 1Q8Y ASP B 306 UNP Q03656 SEE REMARK 999 SEQRES 1 A 373 ASP TYR ARG PRO GLY GLY TYR HIS PRO ALA PHE LYS GLY SEQRES 2 A 373 GLU PRO TYR LYS ASP ALA ARG TYR ILE LEU VAL ARG LYS SEQRES 3 A 373 LEU GLY TRP GLY HIS PHE SER THR VAL TRP LEU ALA LYS SEQRES 4 A 373 ASP MET VAL ASN ASN THR HIS VAL ALA MET LYS ILE VAL SEQRES 5 A 373 ARG GLY ASP LYS VAL TYR THR GLU ALA ALA GLU ASP GLU SEQRES 6 A 373 ILE LYS LEU LEU GLN ARG VAL ASN ASP ALA ASP ASN THR SEQRES 7 A 373 LYS GLU ASP SER MET GLY ALA ASN HIS ILE LEU LYS LEU SEQRES 8 A 373 LEU ASP HIS PHE ASN HIS LYS GLY PRO ASN GLY VAL HIS SEQRES 9 A 373 VAL VAL MET VAL PHE GLU VAL LEU GLY GLU ASN LEU LEU SEQRES 10 A 373 ALA LEU ILE LYS LYS TYR GLU HIS ARG GLY ILE PRO LEU SEQRES 11 A 373 ILE TYR VAL LYS GLN ILE SER LYS GLN LEU LEU LEU GLY SEQRES 12 A 373 LEU ASP TYR MET HIS ARG ARG CYS GLY ILE ILE HIS THR SEQRES 13 A 373 ASP ILE LYS PRO GLU ASN VAL LEU MET GLU ILE VAL ASP SEQRES 14 A 373 SER PRO GLU ASN LEU ILE GLN ILE LYS ILE ALA ASP LEU SEQRES 15 A 373 GLY ASN ALA CYS TRP TYR ASP GLU HIS TYR THR ASN SER SEQRES 16 A 373 ILE GLN THR ARG GLU TYR ARG SER PRO GLU VAL LEU LEU SEQRES 17 A 373 GLY ALA PRO TRP GLY CYS GLY ALA ASP ILE TRP SER THR SEQRES 18 A 373 ALA CYS LEU ILE PHE GLU LEU ILE THR GLY ASP PHE LEU SEQRES 19 A 373 PHE GLU PRO ASP GLU GLY HIS SER TYR THR LYS ASP ASP SEQRES 20 A 373 ASP HIS ILE ALA GLN ILE ILE GLU LEU LEU GLY GLU LEU SEQRES 21 A 373 PRO SER TYR LEU LEU ARG ASN GLY LYS TYR THR ARG THR SEQRES 22 A 373 PHE PHE ASN SER ARG GLY LEU LEU ARG ASN ILE SER LYS SEQRES 23 A 373 LEU LYS PHE TRP PRO LEU GLU ASP VAL LEU THR GLU LYS SEQRES 24 A 373 TYR LYS PHE SER LYS ASP GLU ALA LYS GLU ILE SER ASP SEQRES 25 A 373 PHE LEU SER PRO MET LEU GLN LEU ASP PRO ARG LYS ARG SEQRES 26 A 373 ALA ASP ALA GLY GLY LEU VAL ASN HIS PRO TRP LEU LYS SEQRES 27 A 373 ASP THR LEU GLY MET GLU GLU ILE ARG VAL PRO ASP ARG SEQRES 28 A 373 GLU LEU TYR GLY SER GLY SER ASP ILE PRO GLY TRP PHE SEQRES 29 A 373 GLU GLU VAL ARG ASP HIS LYS ARG HIS SEQRES 1 B 373 ASP TYR ARG PRO GLY GLY TYR HIS PRO ALA PHE LYS GLY SEQRES 2 B 373 GLU PRO TYR LYS ASP ALA ARG TYR ILE LEU VAL ARG LYS SEQRES 3 B 373 LEU GLY TRP GLY HIS PHE SER THR VAL TRP LEU ALA LYS SEQRES 4 B 373 ASP MET VAL ASN ASN THR HIS VAL ALA MET LYS ILE VAL SEQRES 5 B 373 ARG GLY ASP LYS VAL TYR THR GLU ALA ALA GLU ASP GLU SEQRES 6 B 373 ILE LYS LEU LEU GLN ARG VAL ASN ASP ALA ASP ASN THR SEQRES 7 B 373 LYS GLU ASP SER MET GLY ALA ASN HIS ILE LEU LYS LEU SEQRES 8 B 373 LEU ASP HIS PHE ASN HIS LYS GLY PRO ASN GLY VAL HIS SEQRES 9 B 373 VAL VAL MET VAL PHE GLU VAL LEU GLY GLU ASN LEU LEU SEQRES 10 B 373 ALA LEU ILE LYS LYS TYR GLU HIS ARG GLY ILE PRO LEU SEQRES 11 B 373 ILE TYR VAL LYS GLN ILE SER LYS GLN LEU LEU LEU GLY SEQRES 12 B 373 LEU ASP TYR MET HIS ARG ARG CYS GLY ILE ILE HIS THR SEQRES 13 B 373 ASP ILE LYS PRO GLU ASN VAL LEU MET GLU ILE VAL ASP SEQRES 14 B 373 SER PRO GLU ASN LEU ILE GLN ILE LYS ILE ALA ASP LEU SEQRES 15 B 373 GLY ASN ALA CYS TRP TYR ASP GLU HIS TYR THR ASN SER SEQRES 16 B 373 ILE GLN THR ARG GLU TYR ARG SER PRO GLU VAL LEU LEU SEQRES 17 B 373 GLY ALA PRO TRP GLY CYS GLY ALA ASP ILE TRP SER THR SEQRES 18 B 373 ALA CYS LEU ILE PHE GLU LEU ILE THR GLY ASP PHE LEU SEQRES 19 B 373 PHE GLU PRO ASP GLU GLY HIS SER TYR THR LYS ASP ASP SEQRES 20 B 373 ASP HIS ILE ALA GLN ILE ILE GLU LEU LEU GLY GLU LEU SEQRES 21 B 373 PRO SER TYR LEU LEU ARG ASN GLY LYS TYR THR ARG THR SEQRES 22 B 373 PHE PHE ASN SER ARG GLY LEU LEU ARG ASN ILE SER LYS SEQRES 23 B 373 LEU LYS PHE TRP PRO LEU GLU ASP VAL LEU THR GLU LYS SEQRES 24 B 373 TYR LYS PHE SER LYS ASP GLU ALA LYS GLU ILE SER ASP SEQRES 25 B 373 PHE LEU SER PRO MET LEU GLN LEU ASP PRO ARG LYS ARG SEQRES 26 B 373 ALA ASP ALA GLY GLY LEU VAL ASN HIS PRO TRP LEU LYS SEQRES 27 B 373 ASP THR LEU GLY MET GLU GLU ILE ARG VAL PRO ASP ARG SEQRES 28 B 373 GLU LEU TYR GLY SER GLY SER ASP ILE PRO GLY TRP PHE SEQRES 29 B 373 GLU GLU VAL ARG ASP HIS LYS ARG HIS HET SO4 A 801 5 HET SO4 A 805 5 HET SO4 A 806 5 HET MG A 809 1 HET ADP A 810 27 HET SO4 B 802 5 HET SO4 B 803 5 HET SO4 B 804 5 HET SO4 B 807 5 HET SO4 B 808 5 HET ADE B 900 10 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ADE ADENINE FORMUL 3 SO4 8(O4 S 2-) FORMUL 6 MG MG 2+ FORMUL 7 ADP C10 H15 N5 O10 P2 FORMUL 13 ADE C5 H5 N5 FORMUL 14 HOH *262(H2 O) HELIX 1 1 ASP A 192 ALA A 212 1 21 HELIX 2 2 THR A 215 ASN A 223 1 9 HELIX 3 3 LEU A 253 TYR A 260 1 8 HELIX 4 4 PRO A 266 ARG A 287 1 22 HELIX 5 5 LYS A 296 GLU A 298 5 3 HELIX 6 6 THR A 567 ARG A 571 5 5 HELIX 7 7 SER A 572 GLY A 578 1 7 HELIX 8 8 CYS A 583 GLY A 600 1 18 HELIX 9 9 LYS A 614 GLY A 627 1 14 HELIX 10 10 PRO A 630 GLY A 637 1 8 HELIX 11 11 TYR A 639 PHE A 644 1 6 HELIX 12 12 PRO A 660 LYS A 668 1 9 HELIX 13 13 SER A 672 SER A 684 1 13 HELIX 14 14 PRO A 685 GLN A 688 5 4 HELIX 15 15 ASP A 696 ASN A 702 1 7 HELIX 16 16 HIS A 703 LYS A 707 5 5 HELIX 17 17 ASP B 192 ALA B 212 1 21 HELIX 18 18 THR B 215 ASN B 223 1 9 HELIX 19 19 ASN B 252 TYR B 260 1 9 HELIX 20 20 PRO B 266 ARG B 287 1 22 HELIX 21 21 LYS B 296 GLU B 298 5 3 HELIX 22 22 SER B 539 ASN B 542 5 4 HELIX 23 23 ASP B 550 ALA B 554 5 5 HELIX 24 24 THR B 567 ARG B 571 5 5 HELIX 25 25 SER B 572 GLY B 578 1 7 HELIX 26 26 CYS B 583 GLY B 600 1 18 HELIX 27 27 THR B 613 GLY B 627 1 15 HELIX 28 28 PRO B 630 GLY B 637 1 8 HELIX 29 29 TYR B 639 PHE B 644 1 6 HELIX 30 30 PRO B 660 LYS B 668 1 9 HELIX 31 31 SER B 672 SER B 684 1 13 HELIX 32 32 PRO B 685 GLN B 688 5 4 HELIX 33 33 ASP B 696 ASN B 702 1 7 HELIX 34 34 HIS B 703 LYS B 707 5 5 HELIX 35 35 SER B 725 ILE B 729 5 5 SHEET 1 A 6 PRO A 152 TYR A 153 0 SHEET 2 A 6 TYR A 158 TRP A 166 -1 O TYR A 158 N TYR A 153 SHEET 3 A 6 SER A 170 ASP A 177 -1 O VAL A 172 N GLY A 165 SHEET 4 A 6 THR A 182 VAL A 189 -1 O THR A 182 N ASP A 177 SHEET 5 A 6 GLY A 239 PHE A 246 -1 O MET A 244 N LYS A 187 SHEET 6 A 6 ASP A 230 GLY A 236 -1 N HIS A 234 O HIS A 241 SHEET 1 B 3 GLU A 251 ASN A 252 0 SHEET 2 B 3 VAL A 300 ASP A 306 -1 O MET A 302 N GLU A 251 SHEET 3 B 3 LEU A 543 ILE A 548 -1 O LYS A 547 N LEU A 301 SHEET 1 C 2 ILE A 290 ILE A 291 0 SHEET 2 C 2 CYS A 555 TRP A 556 -1 O CYS A 555 N ILE A 291 SHEET 1 D 6 PRO B 152 TYR B 153 0 SHEET 2 D 6 TYR B 158 GLY B 165 -1 O TYR B 158 N TYR B 153 SHEET 3 D 6 SER B 170 ASP B 177 -1 O LEU B 174 N ARG B 162 SHEET 4 D 6 THR B 182 VAL B 189 -1 O THR B 182 N ASP B 177 SHEET 5 D 6 VAL B 240 GLU B 247 -1 O PHE B 246 N ALA B 185 SHEET 6 D 6 ASP B 230 LYS B 235 -1 N HIS B 234 O HIS B 241 SHEET 1 E 2 ILE B 290 ILE B 291 0 SHEET 2 E 2 CYS B 555 TRP B 556 -1 O CYS B 555 N ILE B 291 SHEET 1 F 2 VAL B 300 ASP B 306 0 SHEET 2 F 2 LEU B 543 ILE B 548 -1 O LYS B 547 N LEU B 301 LINK OD1 ASN A 299 MG MG A 809 1555 1555 2.46 LINK OD2 ASP A 550 MG MG A 809 1555 1555 2.21 LINK MG MG A 809 O1B ADP A 810 1555 1555 2.38 LINK MG MG A 809 O2A ADP A 810 1555 1555 2.09 SITE 1 AC1 11 TYR A 153 LYS A 154 ASP A 155 PHE A 232 SITE 2 AC1 11 ASN A 233 HIS A 234 LYS A 235 HOH A 814 SITE 3 AC1 11 HOH A 843 HOH A 844 HOH A 899 SITE 1 AC2 8 TYR B 153 LYS B 154 ASP B 155 PHE B 232 SITE 2 AC2 8 HIS B 234 LYS B 235 HOH B 906 HOH B 944 SITE 1 AC3 5 SER B 631 ARG B 635 ARG B 692 HOH B1002 SITE 2 AC3 5 HOH B1032 SITE 1 AC4 3 ARG B 568 ARG B 571 HOH B 961 SITE 1 AC5 4 SER A 631 ARG A 635 ARG A 692 HOH A 924 SITE 1 AC6 2 ARG A 571 HOH A 835 SITE 1 AC7 3 GLY B 609 HIS B 610 SER B 611 SITE 1 AC8 4 ARG B 641 ASN B 645 SER B 646 ARG B 651 SITE 1 AC9 3 ASN A 299 ASP A 550 ADP A 810 SITE 1 BC1 20 GLY A 165 TRP A 166 GLY A 167 HIS A 168 SITE 2 BC1 20 PHE A 169 SER A 170 VAL A 172 ALA A 185 SITE 3 BC1 20 LYS A 187 LEU A 226 GLU A 247 LEU A 249 SITE 4 BC1 20 GLY A 250 ASN A 252 GLU A 298 ASN A 299 SITE 5 BC1 20 LEU A 301 ASP A 550 MG A 809 HOH A 842 SITE 1 BC2 5 ALA B 185 LEU B 226 GLU B 247 VAL B 248 SITE 2 BC2 5 LEU B 249 CRYST1 71.577 88.653 133.786 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013971 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007475 0.00000