PDB Short entry for 1Q97 HEADER TRANSFERASE 22-AUG-03 1Q97 TITLE THE STRUCTURE OF THE SACCHAROMYCES CEREVISIAE SR PROTEIN KINASE, TITLE 2 SKY1P, WITH BOUND ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SR PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SKY1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOLEN,J.NGO,S.CHAKRABARTI,D.VU,J.A.ADAMS,G.GHOSH REVDAT 4 14-FEB-24 1Q97 1 REMARK LINK REVDAT 3 02-AUG-17 1Q97 1 SOURCE REMARK REVDAT 2 24-FEB-09 1Q97 1 VERSN REVDAT 1 23-SEP-03 1Q97 0 JRNL AUTH B.NOLEN,J.NGO,S.CHAKRABARTI,D.VU,J.A.ADAMS,G.GHOSH JRNL TITL NUCLEOTIDE-INDUCED CONFORMATIONAL CHANGES IN THE JRNL TITL 2 SACCHAROMYCES CEREVISIAE SR PROTEIN KINASE, SKY1P, REVEALED JRNL TITL 3 BY X-RAY CRYSTALLOGRAPHY JRNL REF BIOCHEMISTRY V. 42 9575 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12911299 JRNL DOI 10.1021/BI0344331 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 33170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1548 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3242 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 175 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.30000 REMARK 3 B22 (A**2) : -9.64000 REMARK 3 B33 (A**2) : 6.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 41.17 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIGAND_5.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : LIGAND_5.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q97 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000020074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 94 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33170 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M (NH4)2SO4, 100MM NA ACETATE PH REMARK 280 4.5, 15% ETHYLENE GLYCOL. CRYSTALS THEN DIALYZED INTO 30% PEG REMARK 280 400 AND 100MM NA ACETATE PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.91150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.74750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.34600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.74750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.91150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.34600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 138 REMARK 465 TYR A 139 REMARK 465 ARG A 140 REMARK 465 PRO A 141 REMARK 465 GLY A 142 REMARK 465 GLY A 143 REMARK 465 GLU A 605 REMARK 465 PRO A 606 REMARK 465 ASP A 607 REMARK 465 GLU A 608 REMARK 465 GLY A 609 REMARK 465 HIS A 610 REMARK 465 SER A 611 REMARK 465 TYR A 612 REMARK 465 THR A 613 REMARK 465 ARG A 647 REMARK 465 GLY A 648 REMARK 465 ASP A 738 REMARK 465 HIS A 739 REMARK 465 LYS A 740 REMARK 465 ARG A 741 REMARK 465 HIS A 742 REMARK 465 ASP B 138 REMARK 465 TYR B 139 REMARK 465 ARG B 140 REMARK 465 PRO B 141 REMARK 465 GLY B 142 REMARK 465 GLY B 143 REMARK 465 TYR B 144 REMARK 465 ASP B 738 REMARK 465 HIS B 739 REMARK 465 LYS B 740 REMARK 465 ARG B 741 REMARK 465 HIS B 742 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 144 OH REMARK 470 TRP A 166 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 166 CZ3 CH2 REMARK 470 HIS A 168 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 614 CG CD CE NZ REMARK 470 LEU A 649 CG CD1 CD2 REMARK 470 ASN A 652 CG OD1 ND2 REMARK 470 TRP B 166 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 166 CZ3 CH2 REMARK 470 HIS B 168 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 647 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 714 OE2 GLU B 713 2654 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 154 70.96 45.09 REMARK 500 SER A 170 -169.82 -166.52 REMARK 500 ASN A 181 59.05 38.63 REMARK 500 ASP A 192 138.52 173.89 REMARK 500 ASN A 214 -60.75 -124.31 REMARK 500 LEU A 226 104.46 -59.61 REMARK 500 TYR A 260 33.08 -96.41 REMARK 500 THR A 293 -2.96 69.86 REMARK 500 ASP A 294 52.00 -150.02 REMARK 500 ASP A 550 81.54 45.65 REMARK 500 GLU A 559 95.28 -162.89 REMARK 500 GLN A 566 141.02 68.54 REMARK 500 ARG A 568 -73.40 -13.13 REMARK 500 ASN A 645 153.46 -47.41 REMARK 500 MET A 712 20.12 -145.64 REMARK 500 TYR A 723 -7.93 78.00 REMARK 500 LYS B 154 76.27 45.36 REMARK 500 SER B 170 -167.72 -173.35 REMARK 500 ASN B 214 -55.19 -121.08 REMARK 500 THR B 293 -6.95 72.28 REMARK 500 ASP B 294 53.45 -145.09 REMARK 500 GLU B 303 141.69 178.32 REMARK 500 ASP B 550 86.84 44.98 REMARK 500 GLU B 559 94.22 -164.46 REMARK 500 GLN B 566 158.89 67.39 REMARK 500 ARG B 568 -80.35 -20.49 REMARK 500 SER B 654 -88.01 -85.36 REMARK 500 TYR B 723 -4.80 81.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 743 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 299 OD1 REMARK 620 2 ATP A 485 O1G 151.2 REMARK 620 3 ATP A 485 O3A 137.5 50.4 REMARK 620 4 ATP A 485 O2G 129.0 58.8 93.3 REMARK 620 5 ATP A 485 O1A 86.1 97.3 51.7 143.0 REMARK 620 6 ASP A 550 OD2 77.3 131.4 99.0 93.2 82.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 744 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 485 O2G REMARK 620 2 ATP A 485 O3B 54.6 REMARK 620 3 ATP A 485 O1B 107.4 57.3 REMARK 620 4 ASP A 550 OD1 116.2 133.8 93.6 REMARK 620 5 ASP A 550 OD2 69.8 99.3 100.1 47.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 743 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 145 NE2 REMARK 620 2 GLU B 151 OE2 153.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 743 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 744 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 743 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 745 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 744 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN B 486 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q8Y RELATED DB: PDB REMARK 900 RELATED ID: 1Q8Z RELATED DB: PDB REMARK 900 RELATED ID: 1Q99 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 137 AMINO ACIDS TRUNCATED FROM N-TERMINUS, REMARK 999 RESIDUES 305-538 WERE DELETED AND REPLACED WITH VAL-ASP DBREF 1Q97 A 138 304 UNP Q03656 SKY1_YEAST 138 304 DBREF 1Q97 A 539 742 UNP Q03656 KM65_YEAST 539 742 DBREF 1Q97 B 138 304 UNP Q03656 SKY1_YEAST 138 304 DBREF 1Q97 B 539 742 UNP Q03656 KM65_YEAST 539 742 SEQADV 1Q97 VAL A 305 UNP Q03656 SEE REMARK 999 SEQADV 1Q97 ASP A 306 UNP Q03656 SEE REMARK 999 SEQADV 1Q97 VAL B 305 UNP Q03656 SEE REMARK 999 SEQADV 1Q97 ASP B 306 UNP Q03656 SEE REMARK 999 SEQRES 1 A 373 ASP TYR ARG PRO GLY GLY TYR HIS PRO ALA PHE LYS GLY SEQRES 2 A 373 GLU PRO TYR LYS ASP ALA ARG TYR ILE LEU VAL ARG LYS SEQRES 3 A 373 LEU GLY TRP GLY HIS PHE SER THR VAL TRP LEU ALA LYS SEQRES 4 A 373 ASP MET VAL ASN ASN THR HIS VAL ALA MET LYS ILE VAL SEQRES 5 A 373 ARG GLY ASP LYS VAL TYR THR GLU ALA ALA GLU ASP GLU SEQRES 6 A 373 ILE LYS LEU LEU GLN ARG VAL ASN ASP ALA ASP ASN THR SEQRES 7 A 373 LYS GLU ASP SER MET GLY ALA ASN HIS ILE LEU LYS LEU SEQRES 8 A 373 LEU ASP HIS PHE ASN HIS LYS GLY PRO ASN GLY VAL HIS SEQRES 9 A 373 VAL VAL MET VAL PHE GLU VAL LEU GLY GLU ASN LEU LEU SEQRES 10 A 373 ALA LEU ILE LYS LYS TYR GLU HIS ARG GLY ILE PRO LEU SEQRES 11 A 373 ILE TYR VAL LYS GLN ILE SER LYS GLN LEU LEU LEU GLY SEQRES 12 A 373 LEU ASP TYR MET HIS ARG ARG CYS GLY ILE ILE HIS THR SEQRES 13 A 373 ASP ILE LYS PRO GLU ASN VAL LEU MET GLU ILE VAL ASP SEQRES 14 A 373 SER PRO GLU ASN LEU ILE GLN ILE LYS ILE ALA ASP LEU SEQRES 15 A 373 GLY ASN ALA CYS TRP TYR ASP GLU HIS TYR THR ASN SER SEQRES 16 A 373 ILE GLN THR ARG GLU TYR ARG SER PRO GLU VAL LEU LEU SEQRES 17 A 373 GLY ALA PRO TRP GLY CYS GLY ALA ASP ILE TRP SER THR SEQRES 18 A 373 ALA CYS LEU ILE PHE GLU LEU ILE THR GLY ASP PHE LEU SEQRES 19 A 373 PHE GLU PRO ASP GLU GLY HIS SER TYR THR LYS ASP ASP SEQRES 20 A 373 ASP HIS ILE ALA GLN ILE ILE GLU LEU LEU GLY GLU LEU SEQRES 21 A 373 PRO SER TYR LEU LEU ARG ASN GLY LYS TYR THR ARG THR SEQRES 22 A 373 PHE PHE ASN SER ARG GLY LEU LEU ARG ASN ILE SER LYS SEQRES 23 A 373 LEU LYS PHE TRP PRO LEU GLU ASP VAL LEU THR GLU LYS SEQRES 24 A 373 TYR LYS PHE SER LYS ASP GLU ALA LYS GLU ILE SER ASP SEQRES 25 A 373 PHE LEU SER PRO MET LEU GLN LEU ASP PRO ARG LYS ARG SEQRES 26 A 373 ALA ASP ALA GLY GLY LEU VAL ASN HIS PRO TRP LEU LYS SEQRES 27 A 373 ASP THR LEU GLY MET GLU GLU ILE ARG VAL PRO ASP ARG SEQRES 28 A 373 GLU LEU TYR GLY SER GLY SER ASP ILE PRO GLY TRP PHE SEQRES 29 A 373 GLU GLU VAL ARG ASP HIS LYS ARG HIS SEQRES 1 B 373 ASP TYR ARG PRO GLY GLY TYR HIS PRO ALA PHE LYS GLY SEQRES 2 B 373 GLU PRO TYR LYS ASP ALA ARG TYR ILE LEU VAL ARG LYS SEQRES 3 B 373 LEU GLY TRP GLY HIS PHE SER THR VAL TRP LEU ALA LYS SEQRES 4 B 373 ASP MET VAL ASN ASN THR HIS VAL ALA MET LYS ILE VAL SEQRES 5 B 373 ARG GLY ASP LYS VAL TYR THR GLU ALA ALA GLU ASP GLU SEQRES 6 B 373 ILE LYS LEU LEU GLN ARG VAL ASN ASP ALA ASP ASN THR SEQRES 7 B 373 LYS GLU ASP SER MET GLY ALA ASN HIS ILE LEU LYS LEU SEQRES 8 B 373 LEU ASP HIS PHE ASN HIS LYS GLY PRO ASN GLY VAL HIS SEQRES 9 B 373 VAL VAL MET VAL PHE GLU VAL LEU GLY GLU ASN LEU LEU SEQRES 10 B 373 ALA LEU ILE LYS LYS TYR GLU HIS ARG GLY ILE PRO LEU SEQRES 11 B 373 ILE TYR VAL LYS GLN ILE SER LYS GLN LEU LEU LEU GLY SEQRES 12 B 373 LEU ASP TYR MET HIS ARG ARG CYS GLY ILE ILE HIS THR SEQRES 13 B 373 ASP ILE LYS PRO GLU ASN VAL LEU MET GLU ILE VAL ASP SEQRES 14 B 373 SER PRO GLU ASN LEU ILE GLN ILE LYS ILE ALA ASP LEU SEQRES 15 B 373 GLY ASN ALA CYS TRP TYR ASP GLU HIS TYR THR ASN SER SEQRES 16 B 373 ILE GLN THR ARG GLU TYR ARG SER PRO GLU VAL LEU LEU SEQRES 17 B 373 GLY ALA PRO TRP GLY CYS GLY ALA ASP ILE TRP SER THR SEQRES 18 B 373 ALA CYS LEU ILE PHE GLU LEU ILE THR GLY ASP PHE LEU SEQRES 19 B 373 PHE GLU PRO ASP GLU GLY HIS SER TYR THR LYS ASP ASP SEQRES 20 B 373 ASP HIS ILE ALA GLN ILE ILE GLU LEU LEU GLY GLU LEU SEQRES 21 B 373 PRO SER TYR LEU LEU ARG ASN GLY LYS TYR THR ARG THR SEQRES 22 B 373 PHE PHE ASN SER ARG GLY LEU LEU ARG ASN ILE SER LYS SEQRES 23 B 373 LEU LYS PHE TRP PRO LEU GLU ASP VAL LEU THR GLU LYS SEQRES 24 B 373 TYR LYS PHE SER LYS ASP GLU ALA LYS GLU ILE SER ASP SEQRES 25 B 373 PHE LEU SER PRO MET LEU GLN LEU ASP PRO ARG LYS ARG SEQRES 26 B 373 ALA ASP ALA GLY GLY LEU VAL ASN HIS PRO TRP LEU LYS SEQRES 27 B 373 ASP THR LEU GLY MET GLU GLU ILE ARG VAL PRO ASP ARG SEQRES 28 B 373 GLU LEU TYR GLY SER GLY SER ASP ILE PRO GLY TRP PHE SEQRES 29 B 373 GLU GLU VAL ARG ASP HIS LYS ARG HIS HET MG A 743 1 HET MG A 744 1 HET SO4 A 745 5 HET ATP A 485 31 HET NI B 743 1 HET SO4 B 744 5 HET ADN B 486 19 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM NI NICKEL (II) ION HETNAM ADN ADENOSINE FORMUL 3 MG 2(MG 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 ATP C10 H16 N5 O13 P3 FORMUL 7 NI NI 2+ FORMUL 9 ADN C10 H13 N5 O4 FORMUL 10 HOH *145(H2 O) HELIX 1 1 ASP A 192 ALA A 212 1 21 HELIX 2 2 THR A 215 ASN A 223 1 9 HELIX 3 3 LEU A 253 TYR A 260 1 8 HELIX 4 4 PRO A 266 ARG A 287 1 22 HELIX 5 5 LYS A 296 GLU A 298 5 3 HELIX 6 6 THR A 567 ARG A 571 5 5 HELIX 7 7 SER A 572 GLY A 578 1 7 HELIX 8 8 CYS A 583 GLY A 600 1 18 HELIX 9 9 LYS A 614 GLY A 627 1 14 HELIX 10 10 PRO A 630 GLY A 637 1 8 HELIX 11 11 TYR A 639 PHE A 644 1 6 HELIX 12 12 PRO A 660 LYS A 668 1 9 HELIX 13 13 SER A 672 SER A 684 1 13 HELIX 14 14 PRO A 685 GLN A 688 5 4 HELIX 15 15 ASP A 696 ASN A 702 1 7 HELIX 16 16 HIS A 703 LYS A 707 5 5 HELIX 17 17 SER A 725 ILE A 729 5 5 HELIX 18 18 ASP B 192 ALA B 212 1 21 HELIX 19 19 THR B 215 ASN B 223 1 9 HELIX 20 20 ASN B 252 TYR B 260 1 9 HELIX 21 21 PRO B 266 ARG B 287 1 22 HELIX 22 22 LYS B 296 GLU B 298 5 3 HELIX 23 23 SER B 539 ASN B 542 5 4 HELIX 24 24 ASP B 550 ALA B 554 5 5 HELIX 25 25 THR B 567 ARG B 571 5 5 HELIX 26 26 SER B 572 GLY B 578 1 7 HELIX 27 27 CYS B 583 GLY B 600 1 18 HELIX 28 28 THR B 613 GLY B 627 1 15 HELIX 29 29 PRO B 630 GLY B 637 1 8 HELIX 30 30 TYR B 639 PHE B 644 1 6 HELIX 31 31 PRO B 660 LYS B 668 1 9 HELIX 32 32 SER B 672 SER B 684 1 13 HELIX 33 33 ASP B 696 ASN B 702 1 7 HELIX 34 34 HIS B 703 LYS B 707 5 5 SHEET 1 A 6 PRO A 152 TYR A 153 0 SHEET 2 A 6 TYR A 158 TRP A 166 -1 O TYR A 158 N TYR A 153 SHEET 3 A 6 SER A 170 ASP A 177 -1 O LEU A 174 N ARG A 162 SHEET 4 A 6 THR A 182 VAL A 189 -1 O THR A 182 N ASP A 177 SHEET 5 A 6 GLY A 239 PHE A 246 -1 O MET A 244 N LYS A 187 SHEET 6 A 6 ASP A 230 GLY A 236 -1 N ASP A 230 O VAL A 245 SHEET 1 B 3 GLU A 251 ASN A 252 0 SHEET 2 B 3 VAL A 300 ASP A 306 -1 O MET A 302 N GLU A 251 SHEET 3 B 3 LEU A 543 ILE A 548 -1 O LEU A 543 N ASP A 306 SHEET 1 C 2 ILE A 290 ILE A 291 0 SHEET 2 C 2 CYS A 555 TRP A 556 -1 O CYS A 555 N ILE A 291 SHEET 1 D 6 PRO B 152 TYR B 153 0 SHEET 2 D 6 TYR B 158 TRP B 166 -1 O TYR B 158 N TYR B 153 SHEET 3 D 6 SER B 170 ASP B 177 -1 O LEU B 174 N ARG B 162 SHEET 4 D 6 THR B 182 VAL B 189 -1 O THR B 182 N ASP B 177 SHEET 5 D 6 GLY B 239 GLU B 247 -1 O MET B 244 N LYS B 187 SHEET 6 D 6 ASP B 230 GLY B 236 -1 N ASP B 230 O VAL B 245 SHEET 1 E 2 ILE B 290 ILE B 291 0 SHEET 2 E 2 CYS B 555 TRP B 556 -1 O CYS B 555 N ILE B 291 SHEET 1 F 2 VAL B 300 ASP B 306 0 SHEET 2 F 2 LEU B 543 ILE B 548 -1 O LYS B 547 N LEU B 301 LINK OD1 ASN A 299 MG MG A 743 1555 1555 3.04 LINK O1G ATP A 485 MG MG A 743 1555 1555 2.80 LINK O3A ATP A 485 MG MG A 743 1555 1555 3.09 LINK O2G ATP A 485 MG MG A 743 1555 1555 2.36 LINK O1A ATP A 485 MG MG A 743 1555 1555 2.66 LINK O2G ATP A 485 MG MG A 744 1555 1555 3.07 LINK O3B ATP A 485 MG MG A 744 1555 1555 2.09 LINK O1B ATP A 485 MG MG A 744 1555 1555 2.91 LINK OD2 ASP A 550 MG MG A 743 1555 1555 2.12 LINK OD1 ASP A 550 MG MG A 744 1555 1555 2.86 LINK OD2 ASP A 550 MG MG A 744 1555 1555 2.59 LINK NE2 HIS B 145 NI NI B 743 1555 1555 2.57 LINK OE2 GLU B 151 NI NI B 743 1555 1555 2.12 SITE 1 AC1 4 ASN A 299 ATP A 485 ASP A 550 MG A 744 SITE 1 AC2 3 ATP A 485 ASP A 550 MG A 743 SITE 1 AC3 4 HIS B 145 GLU B 151 TYR B 153 HIS B 234 SITE 1 AC4 9 TYR A 153 LYS A 154 ASP A 155 ASN A 233 SITE 2 AC4 9 HIS A 234 LYS A 235 HOH A 776 HOH A 796 SITE 3 AC4 9 HOH A 798 SITE 1 AC5 7 LYS B 154 ASP B 155 PHE B 232 ASN B 233 SITE 2 AC5 7 HIS B 234 LYS B 235 HOH B 752 SITE 1 AC6 18 GLY A 165 GLY A 167 HIS A 168 SER A 170 SITE 2 AC6 18 VAL A 172 ALA A 185 LYS A 187 LEU A 226 SITE 3 AC6 18 GLU A 247 VAL A 248 LEU A 249 GLY A 250 SITE 4 AC6 18 ASN A 252 GLU A 298 LEU A 301 ASP A 550 SITE 5 AC6 18 MG A 743 MG A 744 SITE 1 AC7 7 TRP B 166 ALA B 185 LEU B 226 GLU B 247 SITE 2 AC7 7 VAL B 248 LEU B 249 HOH B 758 CRYST1 71.823 88.692 133.495 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007491 0.00000