PDB Short entry for 1QB4 HEADER LYASE 30-APR-99 1QB4 TITLE CRYSTAL STRUCTURE OF MN(2+)-BOUND PHOSPHOENOLPYRUVATE CARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.31; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: K12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PT3 KEYWDS ALPHA BETA BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MATSUMURA,M.TERADA,S.SHIRAKATA,T.INOUE,T.YOSHINAGA,K.IZUI,Y.KAI REVDAT 5 14-FEB-24 1QB4 1 REMARK LINK REVDAT 4 23-MAY-18 1QB4 1 REMARK REVDAT 3 24-FEB-09 1QB4 1 VERSN REVDAT 2 01-APR-03 1QB4 1 JRNL REVDAT 1 01-MAY-02 1QB4 0 JRNL AUTH H.MATSUMURA,M.TERADA,S.SHIRAKATA,T.INOUE,T.YOSHINAGA,K.IZUI, JRNL AUTH 2 Y.KAI JRNL TITL PLAUSIBLE PHOSPHOENOLPYRUVATE BINDING SITE REVEALED BY 2.6 A JRNL TITL 2 STRUCTURE OF MN2+-BOUND PHOSPHOENOLPYRUVATE CARBOXYLASE FROM JRNL TITL 3 ESCHERICHIA COLI JRNL REF FEBS LETT. V. 458 93 1999 JRNL REFN ISSN 0014-5793 JRNL PMID 10481043 JRNL DOI 10.1016/S0014-5793(99)01103-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.KAI,H.MATSUMURA,T.INOUE,K.TERADA,Y.NAGARA,T.YOSHINAGA, REMARK 1 AUTH 2 A.KIHARA,K.TSUMURA,K.IZUI REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF PHOSPHOENOLPYRUVATE REMARK 1 TITL 2 CARBOXYLASE: A PROPOSED MECHANISM FOR ALLOSTERIC INHIBITION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 96 823 1999 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.96.3.823 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 33439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6835 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000009060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-18B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : WEISSENBERG REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34589 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 4.560 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 300, MANGANESE SULPHATE, SUCROSE., REMARK 280 PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.87500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 124.20500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.73500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.87500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 124.20500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.73500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.87500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 124.20500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.73500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.87500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 124.20500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.73500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 117.75000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 117.75000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 703 REMARK 465 ARG A 704 REMARK 465 PRO A 705 REMARK 465 THR A 706 REMARK 465 GLY A 707 REMARK 465 GLY A 708 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CG CD OE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 294 CG CD OE1 OE2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 GLU A 343 CG CD OE1 OE2 REMARK 470 ARG A 443 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 570 CG CD CE NZ REMARK 470 LYS A 702 CA C O CB CG CD CE REMARK 470 LYS A 702 NZ REMARK 470 SER A 711 OG REMARK 470 GLN A 858 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 9 CD - NE - CZ ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 53 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 TYR A 88 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU A 129 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG A 145 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ILE A 166 N - CA - CB ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 177 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 192 CD - NE - CZ ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG A 192 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 192 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 265 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 277 CB - CG - OD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 320 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 322 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU A 323 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP A 378 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 382 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 382 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 392 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP A 394 CB - CG - OD2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 396 CD - NE - CZ ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 396 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 401 CD - NE - CZ ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG A 401 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 401 NE - CZ - NH2 ANGL. DEV. = 7.5 DEGREES REMARK 500 GLU A 404 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 411 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 GLU A 419 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 438 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 438 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 SER A 468 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 ASP A 482 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 581 C - N - CA ANGL. DEV. = 18.9 DEGREES REMARK 500 ARG A 581 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ALA A 590 CB - CA - C ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 609 CG - CD - NE ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 609 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 618 CD - NE - CZ ANGL. DEV. = 27.7 DEGREES REMARK 500 ARG A 683 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 699 CD - NE - CZ ANGL. DEV. = 33.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 64 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 -83.50 -30.58 REMARK 500 ASN A 49 97.58 -65.25 REMARK 500 LYS A 94 62.15 -106.70 REMARK 500 PRO A 101 6.78 -52.12 REMARK 500 ASN A 113 68.35 -112.75 REMARK 500 SER A 212 -46.08 -150.26 REMARK 500 GLU A 305 172.97 71.77 REMARK 500 GLU A 306 -59.61 71.21 REMARK 500 GLU A 310 63.49 -174.99 REMARK 500 PRO A 340 154.47 -45.60 REMARK 500 MET A 368 46.17 -106.44 REMARK 500 LEU A 390 -59.75 77.77 REMARK 500 GLU A 419 28.20 -78.65 REMARK 500 PRO A 439 172.59 -58.78 REMARK 500 LEU A 440 -30.46 -133.63 REMARK 500 PRO A 447 -174.96 -67.07 REMARK 500 SER A 603 -35.21 -31.49 REMARK 500 PRO A 687 32.70 -86.07 REMARK 500 LEU A 694 156.65 -49.15 REMARK 500 LEU A 712 165.02 -49.47 REMARK 500 ARG A 725 -5.22 85.78 REMARK 500 TRP A 731 -38.38 -135.61 REMARK 500 LEU A 732 -78.73 -2.82 REMARK 500 GLU A 743 6.03 -63.53 REMARK 500 LYS A 855 -9.82 -42.96 REMARK 500 GLU A 856 45.89 -145.85 REMARK 500 PRO A 860 99.75 -58.62 REMARK 500 ARG A 880 -142.17 44.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 885 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ASP A 884 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FIY RELATED DB: PDB REMARK 900 1FIY IS THE SAME PROTEIN. DBREF 1QB4 A 1 883 UNP P00864 CAPP_ECOLI 1 883 SEQRES 1 A 883 MET ASN GLU GLN TYR SER ALA LEU ARG SER ASN VAL SER SEQRES 2 A 883 MET LEU GLY LYS VAL LEU GLY GLU THR ILE LYS ASP ALA SEQRES 3 A 883 LEU GLY GLU HIS ILE LEU GLU ARG VAL GLU THR ILE ARG SEQRES 4 A 883 LYS LEU SER LYS SER SER ARG ALA GLY ASN ASP ALA ASN SEQRES 5 A 883 ARG GLN GLU LEU LEU THR THR LEU GLN ASN LEU SER ASN SEQRES 6 A 883 ASP GLU LEU LEU PRO VAL ALA ARG ALA PHE SER GLN PHE SEQRES 7 A 883 LEU ASN LEU ALA ASN THR ALA GLU GLN TYR HIS SER ILE SEQRES 8 A 883 SER PRO LYS GLY GLU ALA ALA SER ASN PRO GLU VAL ILE SEQRES 9 A 883 ALA ARG THR LEU ARG LYS LEU LYS ASN GLN PRO GLU LEU SEQRES 10 A 883 SER GLU ASP THR ILE LYS LYS ALA VAL GLU SER LEU SER SEQRES 11 A 883 LEU GLU LEU VAL LEU THR ALA HIS PRO THR GLU ILE THR SEQRES 12 A 883 ARG ARG THR LEU ILE HIS LYS MET VAL GLU VAL ASN ALA SEQRES 13 A 883 CYS LEU LYS GLN LEU ASP ASN LYS ASP ILE ALA ASP TYR SEQRES 14 A 883 GLU HIS ASN GLN LEU MET ARG ARG LEU ARG GLN LEU ILE SEQRES 15 A 883 ALA GLN SER TRP HIS THR ASP GLU ILE ARG LYS LEU ARG SEQRES 16 A 883 PRO SER PRO VAL ASP GLU ALA LYS TRP GLY PHE ALA VAL SEQRES 17 A 883 VAL GLU ASN SER LEU TRP GLN GLY VAL PRO ASN TYR LEU SEQRES 18 A 883 ARG GLU LEU ASN GLU GLN LEU GLU GLU ASN LEU GLY TYR SEQRES 19 A 883 LYS LEU PRO VAL GLU PHE VAL PRO VAL ARG PHE THR SER SEQRES 20 A 883 TRP MET GLY GLY ASP ARG ASP GLY ASN PRO ASN VAL THR SEQRES 21 A 883 ALA ASP ILE THR ARG HIS VAL LEU LEU LEU SER ARG TRP SEQRES 22 A 883 LYS ALA THR ASP LEU PHE LEU LYS ASP ILE GLN VAL LEU SEQRES 23 A 883 VAL SER GLU LEU SER MET VAL GLU ALA THR PRO GLU LEU SEQRES 24 A 883 LEU ALA LEU VAL GLY GLU GLU GLY ALA ALA GLU PRO TYR SEQRES 25 A 883 ARG TYR LEU MET LYS ASN LEU ARG SER ARG LEU MET ALA SEQRES 26 A 883 THR GLN ALA TRP LEU GLU ALA ARG LEU LYS GLY GLU GLU SEQRES 27 A 883 LEU PRO LYS PRO GLU GLY LEU LEU THR GLN ASN GLU GLU SEQRES 28 A 883 LEU TRP GLU PRO LEU TYR ALA CYS TYR GLN SER LEU GLN SEQRES 29 A 883 ALA CYS GLY MET GLY ILE ILE ALA ASN GLY ASP LEU LEU SEQRES 30 A 883 ASP THR LEU ARG ARG VAL LYS CYS PHE GLY VAL PRO LEU SEQRES 31 A 883 VAL ARG ILE ASP ILE ARG GLN GLU SER THR ARG HIS THR SEQRES 32 A 883 GLU ALA LEU GLY GLU LEU THR ARG TYR LEU GLY ILE GLY SEQRES 33 A 883 ASP TYR GLU SER TRP SER GLU ALA ASP LYS GLN ALA PHE SEQRES 34 A 883 LEU ILE ARG GLU LEU ASN SER LYS ARG PRO LEU LEU PRO SEQRES 35 A 883 ARG ASN TRP GLN PRO SER ALA GLU THR ARG GLU VAL LEU SEQRES 36 A 883 ASP THR CYS GLN VAL ILE ALA GLU ALA PRO GLN GLY SER SEQRES 37 A 883 ILE ALA ALA TYR VAL ILE SER MET ALA LYS THR PRO SER SEQRES 38 A 883 ASP VAL LEU ALA VAL HIS LEU LEU LEU LYS GLU ALA GLY SEQRES 39 A 883 ILE GLY PHE ALA MET PRO VAL ALA PRO LEU PHE GLU THR SEQRES 40 A 883 LEU ASP ASP LEU ASN ASN ALA ASN ASP VAL MET THR GLN SEQRES 41 A 883 LEU LEU ASN ILE ASP TRP TYR ARG GLY LEU ILE GLN GLY SEQRES 42 A 883 LYS GLN MET VAL MET ILE GLY TYR SER ASP SER ALA LYS SEQRES 43 A 883 ASP ALA GLY VAL MET ALA ALA SER TRP ALA GLN TYR GLN SEQRES 44 A 883 ALA GLN ASP ALA LEU ILE LYS THR CYS GLU LYS ALA GLY SEQRES 45 A 883 ILE GLU LEU THR LEU PHE HIS GLY ARG GLY GLY SER ILE SEQRES 46 A 883 GLY ARG GLY GLY ALA PRO ALA HIS ALA ALA LEU LEU SER SEQRES 47 A 883 GLN PRO PRO GLY SER LEU LYS GLY GLY LEU ARG VAL THR SEQRES 48 A 883 GLU GLN GLY GLU MET ILE ARG PHE LYS TYR GLY LEU PRO SEQRES 49 A 883 GLU ILE THR VAL SER SER LEU SER LEU TYR THR GLY ALA SEQRES 50 A 883 ILE LEU GLU ALA ASN LEU LEU PRO PRO PRO GLU PRO LYS SEQRES 51 A 883 GLU SER TRP ARG ARG ILE MET ASP GLU LEU SER VAL ILE SEQRES 52 A 883 SER CYS ASP VAL TYR ARG GLY TYR VAL ARG GLU ASN LYS SEQRES 53 A 883 ASP PHE VAL PRO TYR PHE ARG SER ALA THR PRO GLU GLN SEQRES 54 A 883 GLU LEU GLY LYS LEU PRO LEU GLY SER ARG PRO ALA LYS SEQRES 55 A 883 ARG ARG PRO THR GLY GLY VAL GLU SER LEU ARG ALA ILE SEQRES 56 A 883 PRO TRP ILE PHE ALA TRP THR GLN ASN ARG LEU MET LEU SEQRES 57 A 883 PRO ALA TRP LEU GLY ALA GLY THR ALA LEU GLN LYS VAL SEQRES 58 A 883 VAL GLU ASP GLY LYS GLN SER GLU LEU GLU ALA MET CYS SEQRES 59 A 883 ARG ASP TRP PRO PHE PHE SER THR ARG LEU GLY MET LEU SEQRES 60 A 883 GLU MET VAL PHE ALA LYS ALA ASP LEU TRP LEU ALA GLU SEQRES 61 A 883 TYR TYR ASP GLN ARG LEU VAL ASP LYS ALA LEU TRP PRO SEQRES 62 A 883 LEU GLY LYS GLU LEU ARG ASN LEU GLN GLU GLU ASP ILE SEQRES 63 A 883 LYS VAL VAL LEU ALA ILE ALA ASN ASP SER HIS LEU MET SEQRES 64 A 883 ALA ASP LEU PRO TRP ILE ALA GLU SER ILE GLN LEU ARG SEQRES 65 A 883 ASN ILE TYR THR ASP PRO LEU ASN VAL LEU GLN ALA GLU SEQRES 66 A 883 LEU LEU HIS ARG SER ARG GLN ALA GLU LYS GLU GLY GLN SEQRES 67 A 883 GLU PRO ASP PRO ARG VAL GLU GLN ALA LEU MET VAL THR SEQRES 68 A 883 ILE ALA GLY ILE ALA ALA GLY MET ARG ASN THR GLY HET MN A 885 1 HET ASP A 884 9 HETNAM MN MANGANESE (II) ION HETNAM ASP ASPARTIC ACID FORMUL 2 MN MN 2+ FORMUL 3 ASP C4 H7 N O4 FORMUL 4 HOH *81(H2 O) HELIX 1 1 TYR A 5 LEU A 27 1 23 HELIX 2 2 GLU A 29 ALA A 47 1 19 HELIX 3 3 ALA A 51 ASN A 62 1 12 HELIX 4 4 SER A 64 SER A 92 1 29 HELIX 5 5 PRO A 101 ASN A 113 1 13 HELIX 6 6 SER A 118 SER A 128 1 11 HELIX 7 7 LEU A 147 ASP A 162 1 16 HELIX 8 8 ALA A 167 THR A 188 1 22 HELIX 9 9 SER A 197 SER A 212 1 16 HELIX 10 10 SER A 212 LEU A 232 1 21 HELIX 11 11 THR A 260 LEU A 290 1 31 HELIX 12 12 THR A 296 LEU A 302 1 7 HELIX 13 13 GLU A 310 GLY A 336 1 27 HELIX 14 14 GLN A 348 CYS A 366 1 19 HELIX 15 15 MET A 368 ASN A 373 1 6 HELIX 16 16 GLY A 374 PHE A 386 1 13 HELIX 17 17 SER A 399 LEU A 413 1 15 HELIX 18 18 ASP A 417 TRP A 421 5 5 HELIX 19 19 SER A 422 SER A 436 1 15 HELIX 20 20 SER A 448 ALA A 464 1 17 HELIX 21 21 THR A 479 ALA A 493 1 15 HELIX 22 22 THR A 507 ILE A 524 1 18 HELIX 23 23 ILE A 524 ILE A 531 1 8 HELIX 24 24 GLY A 540 GLY A 549 1 10 HELIX 25 25 GLY A 549 GLY A 572 1 24 HELIX 26 26 GLY A 583 ARG A 587 5 5 HELIX 27 27 GLY A 588 SER A 598 1 11 HELIX 28 28 GLN A 613 GLU A 615 5 3 HELIX 29 29 MET A 616 GLY A 622 1 7 HELIX 30 30 LEU A 623 LEU A 644 1 22 HELIX 31 31 LYS A 650 ARG A 673 1 24 HELIX 32 32 ASP A 677 THR A 686 1 10 HELIX 33 33 PRO A 687 LEU A 694 1 8 HELIX 34 34 ARG A 713 ARG A 725 1 13 HELIX 35 35 MET A 727 TRP A 731 5 5 HELIX 36 36 GLY A 733 GLU A 743 1 11 HELIX 37 37 LYS A 746 TRP A 757 1 12 HELIX 38 38 TRP A 757 ALA A 774 1 18 HELIX 39 39 ASP A 775 VAL A 787 1 13 HELIX 40 40 ASP A 788 ALA A 790 5 3 HELIX 41 41 LEU A 791 ASN A 814 1 24 HELIX 42 42 LEU A 822 LYS A 855 1 34 HELIX 43 43 ASP A 861 ARG A 880 1 20 SHEET 1 A 8 GLU A 574 HIS A 579 0 SHEET 2 A 8 LYS A 534 ILE A 539 1 N VAL A 537 O PHE A 578 SHEET 3 A 8 VAL A 501 PHE A 505 1 N PHE A 505 O MET A 538 SHEET 4 A 8 ILE A 469 SER A 475 1 N ILE A 474 O ALA A 502 SHEET 5 A 8 ARG A 392 GLU A 398 1 N ILE A 395 O VAL A 473 SHEET 6 A 8 VAL A 243 SER A 247 1 N SER A 247 O ARG A 392 SHEET 7 A 8 LEU A 131 LEU A 135 1 N LEU A 135 O THR A 246 SHEET 8 A 8 LEU A 608 GLU A 612 1 O VAL A 610 N VAL A 134 LINK OE1 GLU A 506 MN MN A 885 1555 1555 1.92 SITE 1 AC1 2 GLU A 506 ASP A 543 SITE 1 AC2 6 ARG A 587 MET A 769 LYS A 773 ARG A 832 SITE 2 AC2 6 ARG A 880 ASN A 881 CRYST1 117.750 248.410 83.470 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008490 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011980 0.00000