PDB Short entry for 1QJX HEADER VIRUS 06-JUL-99 1QJX TITLE HUMAN RHINOVIRUS 16 COAT PROTEIN IN COMPLEX WITH ANTIVIRAL COMPOUND TITLE 2 WIN68934 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN VP1; COMPND 3 CHAIN: 1; COMPND 4 FRAGMENT: RESIDUES 569-853; COMPND 5 SYNONYM: VIRION PROTEIN 1, P1D, HUMAN RHINOVIRUS 16 COAT PROTEIN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN VP2; COMPND 8 CHAIN: 2; COMPND 9 FRAGMENT: RESIDUES 70-330; COMPND 10 SYNONYM: VIRION PROTEIN 2, P1B, HUMAN RHINOVIRUS 16 COAT PROTEIN; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN VP3; COMPND 13 CHAIN: 3; COMPND 14 FRAGMENT: RESIDUES 331-568; COMPND 15 SYNONYM: VIRION PROTEIN 3, P1C, HUMAN RHINOVIRUS 16 COAT PROTEIN; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: PROTEIN VP4; COMPND 18 CHAIN: 4; COMPND 19 FRAGMENT: RESIDUES 2-69; COMPND 20 SYNONYM: VIRION PROTEIN 4, P1A, HUMAN RHINOVIRUS 16 COAT PROTEIN; COMPND 21 OTHER_DETAILS: RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS COMPND 22 MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN COMPND 23 A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD COMPND 24 AXES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 16; SOURCE 3 ORGANISM_COMMON: HRV-16; SOURCE 4 ORGANISM_TAXID: 31708; SOURCE 5 STRAIN: SEROTYPE 16; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 16; SOURCE 8 ORGANISM_COMMON: HRV-16; SOURCE 9 ORGANISM_TAXID: 31708; SOURCE 10 STRAIN: SEROTYPE 16; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 16; SOURCE 13 ORGANISM_COMMON: HRV-16; SOURCE 14 ORGANISM_TAXID: 31708; SOURCE 15 STRAIN: SEROTYPE 16; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 16; SOURCE 18 ORGANISM_COMMON: HRV-16; SOURCE 19 ORGANISM_TAXID: 31708; SOURCE 20 STRAIN: SEROTYPE 16 KEYWDS VIRUS, NUCLEOTIDYLTRANSFERASE, RHINOVIRUS COAT PROTEIN, RNA-BINDING, KEYWDS 2 TRANSFERASE, LIPOPROTEIN, WIN COMPOUND, PHOSPHOPROTEIN, THIOL KEYWDS 3 PROTEASE, CAPSID PROTEIN, DRUG, VIRION, MEMBRANE, HELICASE, KEYWDS 4 PROTEASE, NUCLEOTIDE-BINDING, HUMAN RHINOVIRUS 16, RNA REPLICATION, KEYWDS 5 ANTIVIRAL COMPOUND, COVALENT PROTEIN-RNA LINKAGE, MYRISTATE, KEYWDS 6 HYDROLASE, CYTOPLASM, ATP-BINDING, CYTOPLASMIC VESICLE, HOST-VIRUS KEYWDS 7 INTERACTION, RNA-DIRECTED RNA POLYMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.T.HADFIELD,G.D.DIANA,M.G.ROSSMANN REVDAT 6 13-DEC-23 1QJX 1 REMARK REVDAT 5 08-MAY-19 1QJX 1 REMARK LINK REVDAT 4 24-FEB-09 1QJX 1 VERSN REVDAT 3 13-DEC-99 1QJX 1 JRNL REVDAT 2 30-JUL-99 1QJX 1 REMARK REVDAT 1 20-JUL-99 1QJX 0 JRNL AUTH A.T.HADFIELD,I.MINOR,G.D.DIANA,M.G.ROSSMANN JRNL TITL ANALYSIS OF THREE STRUCTURALLY RELATED ANTIVIRAL COMPOUNDS JRNL TITL 2 IN COMPLEX WITH HUMAN RHINOVIRUS 16 JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 14730 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10611281 JRNL DOI 10.1073/PNAS.96.26.14730 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.T.HADFIELD,W.M.LEE,R.ZHAO,M.A.OLIVEIRA,I.MINOR, REMARK 1 AUTH 2 R.R.RUECKERT,M.G.ROSSMANN REMARK 1 TITL THE REFINED STRUCTURE OF HUMAN RHINOVIRUS 16 AT 2.15 REMARK 1 TITL 2 ANGSTROMS RESOLUTION: IMPLICATIONS FOR THE VIRAL LIFE CYCLE REMARK 1 REF STRUCTURE V. 5 427 1997 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 9083115 REMARK 1 DOI 10.1016/S0969-2126(97)00199-8 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.A.OLIVEIRA,R.ZHAO,W.M.LEE,M.J.KREMER,I.MINOR,R.R.RUECKERT, REMARK 1 AUTH 2 G.D.DIANA,D.C.PEVEAR,F.J.DUTKO,M.A.MCKINLAY,M.G.ROSSMANN REMARK 1 TITL THE STRUCTURE OF HUMAN RHINOVIRUS 16 REMARK 1 REF STRUCTURE V. 1 51 1993 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 7915182 REMARK 1 DOI 10.1016/0969-2126(93)90008-5 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.H.KIM,P.WILLINGMANN,Z.X.GONG,M.J.KREMER,M.S.CHAPMAN, REMARK 1 AUTH 2 I.MINOR,M.A.OLIVEIRA,M.G.ROSSMANN,K.ANDRIES,G.D.DIANA, REMARK 1 AUTH 3 F.J.DUTKO,M.A.MCKINLAY,D.C.PEVEAR REMARK 1 TITL A COMPARISON OF THE ANTI-RHINOVIRAL DRUG BINDING POCKET IN REMARK 1 TITL 2 HRV14 AND HRV1A REMARK 1 REF J.MOL.BIOL. V. 230 206 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 8383771 REMARK 1 DOI 10.1006/JMBI.1993.1137 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.S.KIM,T.J.SMITH,M.S.CHAPMAN,M.G.ROSSMANN,D.C.PEVEAR, REMARK 1 AUTH 2 F.J.DUTKO,P.J.FELOCK,G.D.DIANA,M.A.MCKINLAY REMARK 1 TITL CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS SEROTYPE 1A (HRV1A) REMARK 1 REF J.MOL.BIOL. V. 210 91 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 2555523 REMARK 1 DOI 10.1016/0022-2836(89)90293-3 REMARK 1 REFERENCE 5 REMARK 1 AUTH T.J.SMITH,M.J.KREMER,M.LUO,G.VRIEND,E.ARNOLD,G.KAMER, REMARK 1 AUTH 2 M.G.ROSSMANN,M.A.MCKINLAY,G.D.DIANA,M.J.OTTO REMARK 1 TITL THE SITE OF ATTACHMENT IN HUMAN RHINOVIRUS 14 FOR ANTIVIRAL REMARK 1 TITL 2 AGENTS THAT INHIBIT UNCOATING REMARK 1 REF SCIENCE V. 233 1286 1986 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 3018924 REMARK 1 DOI 10.1126/SCIENCE.3018924 REMARK 1 REFERENCE 6 REMARK 1 AUTH M.G.ROSSMANN,E.ARNOLD,J.W.ERICKSON,E.A.FRANKENBERGER, REMARK 1 AUTH 2 J.P.GRIFFITH,H.J.HECHT,J.E.JOHNSON,G.KAMER,M.LUO,A.G.MOSSER, REMARK 1 AUTH 3 R.R.RUECKERT,B.SHERRY,G.VRIEND REMARK 1 TITL STRUCTURE OF A HUMAN COMMON COLD VIRUS AND FUNCTIONAL REMARK 1 TITL 2 RELATIONSHIP TO OTHER PICORNAVIRUSES REMARK 1 REF NATURE V. 317 145 1985 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 2993920 REMARK 1 DOI 10.1038/317145A0 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0100 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 48.0 REMARK 3 NUMBER OF REFLECTIONS : 516387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 51639 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 44.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 57186 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 537 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.500 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.000 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : WINPAR.AH REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : HRV16TOP.AH REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION APPLIED REMARK 3 DISORDERED SIDE CHAINS (2 159, 2 160) WERE MODELLED WITH REMARK 3 PREFERRED ROTAMERS WITH GOOD STEREO CHEMISTRY. IN CHAIN 2, REMARK 3 RESIDUES 159 AND 160 SIDE CHAINS WERE NOT VISIBLE IN THE REMARK 3 ELECTRON DENSITY MAPS, AND SIDE CHAIN ATOMS WERE INCLUDED USING REMARK 3 A LIKELY ROTAMER. FOR CHAIN 4, RESIDUES 8 TO 22 WERE NOT REMARK 3 OBSERVED. REMARK 4 REMARK 4 1QJX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1290002908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-94 REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 18 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : FILM REMARK 200 DETECTOR MANUFACTURER : KODAK FILM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PURDUE DATA PROCESSING PACKAGE REMARK 200 DATA SCALING SOFTWARE : PURDUE DATA PROCESSING PACKAGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 621634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 48.8 REMARK 200 DATA REDUNDANCY : 1.400 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 36.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 1AYM REMARK 200 REMARK 200 REMARK: ALTHOUGH OVERALL COMPLETENESS IS LOW (58.7%) THE PRESENCE REMARK 200 OF 30-FOLD NON-CRYSTALLOGRAPHIC SYMMETRY GIVES A DATA -TO- REMARK 200 PARAMETER RATIO OF 22:1 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VIRUS WAS CRYSTALLISED USING THE REMARK 280 HANGING DROP METHOD. 5 MICROLITERS OF VIRUS SOLUTION IN 0.25M REMARK 280 HEPES BUFFER (PH 7.5), WITH 0.25M NACL WAS MIXED WITH 5 REMARK 280 MICROLITERS OF THE RESERVOIR SOLUTION, 0.5-1.5% PEG 8000., PH REMARK 280 7.50, VAPOR DIFFUSION, HANGING DROP REMARK 285 REMARK 285 THE VIRION IS ORIENTED WITH ITS TWO FOLD ALONG THE REMARK 285 CRYSTALLOGRAPHIC TWO FOLD AXIS IN P 2 21 21. REMARK 285 SPACE GROUP P 2 21 21 WAS USED SO THAT THE VIRAL TWO-FOLD REMARK 285 COINCIDES WITH THE X AXIS. THE COORDINATES ARE IN THE P,Q,R REMARK 285 FRAME IN ANGSTROM UNITS AND CORRESPOND TO ICOSAHEDRAL REMARK 285 SYMMETRY AXES. THE ORIGIN IS CHOSEN AT THE CENTRE OF THE REMARK 285 VIRUS WITH P, Q AND R ALONG MUTUALLY PERPENDICULAR TWO-FOLD REMARK 285 AXES OF THE ICOSAHEDRON. THEY SHOULD REMAIN IN THAT FRAME REMARK 285 FOR THE EASE OF THE USER IN CREATING THE BIOLOGICALLY REMARK 285 SIGNIFICANT VIRAL PARTICLE USING THE 60 ICOSAHEDRAL REMARK 285 SYMMETRY OPERATORS. REMARK 285 THE GIVEN ORIGX PUTS THE CENTRE OF THE VIRION AT THE REMARK 285 ORIGIN, WITH A NON CRYSTALLOGRAPHIC TWO FOLD AXIS ALONG REMARK 285 X TO CORRESPOND TO THE CRYSTALLOGRAPHIC TWO FOLD. THE REMARK 285 ORIENTATION CORRESPONDS TO THAT GIVEN IN OTHER REMARK 285 RHINOVIRUS STRUCTURES. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 173.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 167.45000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 173.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 167.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2, 3, 4 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.499997 -0.361145 -0.787139 45.32371 REMARK 350 BIOMT2 2 -0.255564 0.806893 -0.532559 23.16603 REMARK 350 BIOMT3 2 0.827459 0.467422 0.311144 -75.00649 REMARK 350 BIOMT1 3 -0.309032 -0.839903 -0.446149 118.65964 REMARK 350 BIOMT2 3 -0.774664 0.494442 -0.394257 70.22082 REMARK 350 BIOMT3 3 0.551729 0.223763 -0.803444 -50.01250 REMARK 350 BIOMT1 4 -0.309037 -0.774647 0.551732 118.66002 REMARK 350 BIOMT2 4 -0.839922 0.494444 0.223778 76.13625 REMARK 350 BIOMT3 4 -0.446139 -0.394249 -0.803441 40.44112 REMARK 350 BIOMT1 5 0.499990 -0.255558 0.827468 45.32433 REMARK 350 BIOMT2 5 -0.361153 0.806896 0.467442 32.73739 REMARK 350 BIOMT3 5 -0.787127 -0.532542 0.311148 71.35055 REMARK 350 BIOMT1 6 -0.809027 -0.478748 0.340970 163.98251 REMARK 350 BIOMT2 6 -0.478769 0.200218 -0.854807 43.39885 REMARK 350 BIOMT3 6 0.340987 -0.854816 -0.391191 -30.90942 REMARK 350 BIOMT1 7 -0.000022 0.065254 0.997868 90.64880 REMARK 350 BIOMT2 7 -0.997869 -0.065097 0.004261 90.45364 REMARK 350 BIOMT3 7 0.065258 -0.995743 0.065119 -5.91543 REMARK 350 BIOMT1 8 0.809007 0.519087 0.275747 17.31287 REMARK 350 BIOMT2 8 -0.478769 0.309841 0.821455 43.39886 REMARK 350 BIOMT3 8 0.340987 -0.796588 0.499186 -30.90942 REMARK 350 BIOMT1 9 0.500010 0.255569 -0.827448 45.32249 REMARK 350 BIOMT2 9 0.361153 0.806880 0.467440 -32.73739 REMARK 350 BIOMT3 9 0.787127 -0.532577 0.311144 -71.35055 REMARK 350 BIOMT1 10 -0.499990 -0.361127 -0.787138 135.96931 REMARK 350 BIOMT2 10 0.361153 0.739129 -0.568548 -32.73739 REMARK 350 BIOMT3 10 0.787127 -0.568564 -0.239139 -71.35055 REMARK 350 BIOMT1 11 -0.500010 -0.361157 -0.787112 135.97115 REMARK 350 BIOMT2 11 -0.361153 -0.739129 0.568548 32.73740 REMARK 350 BIOMT3 11 -0.787127 0.568564 0.239139 71.35055 REMARK 350 BIOMT1 12 -0.809007 -0.478752 0.341009 163.98077 REMARK 350 BIOMT2 12 0.478769 -0.200218 0.854807 -43.39885 REMARK 350 BIOMT3 12 -0.340987 0.854816 0.391191 30.90942 REMARK 350 BIOMT1 13 0.000022 0.065262 0.997868 90.64485 REMARK 350 BIOMT2 13 0.997869 0.065097 -0.004261 -90.45364 REMARK 350 BIOMT3 13 -0.065258 0.995743 -0.065119 5.91543 REMARK 350 BIOMT1 14 0.809027 0.519077 0.275708 17.31113 REMARK 350 BIOMT2 14 0.478769 -0.309841 -0.821455 -43.39885 REMARK 350 BIOMT3 14 -0.340987 0.796588 -0.499186 30.90942 REMARK 350 BIOMT1 15 0.499990 0.255536 -0.827471 45.32433 REMARK 350 BIOMT2 15 -0.361153 -0.806880 -0.467440 32.73739 REMARK 350 BIOMT3 15 -0.787127 0.532577 -0.311144 71.35054 REMARK 350 BIOMT1 16 0.309037 0.839905 0.446142 62.63362 REMARK 350 BIOMT2 16 0.839922 -0.461089 0.286260 -76.13624 REMARK 350 BIOMT3 16 0.446139 0.286252 -0.847948 -40.44113 REMARK 350 BIOMT1 17 0.309032 0.774644 -0.551739 62.63401 REMARK 350 BIOMT2 17 0.774664 -0.541579 -0.326510 -70.22082 REMARK 350 BIOMT3 17 -0.551729 -0.326496 -0.767454 50.01250 REMARK 350 BIOMT1 18 -0.499997 0.255554 -0.827465 135.96993 REMARK 350 BIOMT2 18 0.255564 -0.869380 -0.422937 -23.16603 REMARK 350 BIOMT3 18 -0.827459 -0.422918 0.369377 75.00649 REMARK 350 BIOMT1 19 -1.000000 0.000001 0.000008 181.29364 REMARK 350 BIOMT2 19 0.000000 -0.991483 0.130238 0.00001 REMARK 350 BIOMT3 19 0.000000 0.130238 0.991483 0.00000 REMARK 350 BIOMT1 20 -0.499990 0.361149 0.787141 135.96931 REMARK 350 BIOMT2 20 0.361153 -0.739145 0.568546 -32.73738 REMARK 350 BIOMT3 20 0.787127 0.568529 0.239135 -71.35055 REMARK 350 BIOMT1 21 -0.500003 0.255595 -0.827448 135.97053 REMARK 350 BIOMT2 21 -0.255564 0.869380 0.422937 23.16604 REMARK 350 BIOMT3 21 0.827459 0.422918 -0.369377 -75.00649 REMARK 350 BIOMT1 22 -1.000000 0.000043 -0.000003 181.29364 REMARK 350 BIOMT2 22 0.000000 0.991483 -0.130238 0.00000 REMARK 350 BIOMT3 22 0.000000 -0.130238 -0.991483 0.00000 REMARK 350 BIOMT1 23 -0.500010 0.361179 0.787115 135.97116 REMARK 350 BIOMT2 23 -0.361153 0.739145 -0.568546 32.73739 REMARK 350 BIOMT3 23 -0.787127 -0.568529 -0.239135 71.35055 REMARK 350 BIOMT1 24 0.308997 0.839924 0.446135 62.63720 REMARK 350 BIOMT2 24 -0.839922 0.461089 -0.286260 76.13624 REMARK 350 BIOMT3 24 -0.446139 -0.286252 0.847948 40.44112 REMARK 350 BIOMT1 25 0.309001 0.774669 -0.551720 62.63682 REMARK 350 BIOMT2 25 -0.774664 0.541579 0.326510 70.22082 REMARK 350 BIOMT3 25 0.551729 0.326496 0.767454 -50.01250 REMARK 350 BIOMT1 26 -0.000004 0.997867 -0.065280 90.64720 REMARK 350 BIOMT2 26 -0.065258 -0.065117 -0.995741 5.91542 REMARK 350 BIOMT3 26 -0.997869 0.004281 0.065122 90.45362 REMARK 350 BIOMT1 27 -0.309037 0.774660 -0.551731 118.66002 REMARK 350 BIOMT2 27 -0.839922 -0.494407 -0.223773 76.13625 REMARK 350 BIOMT3 27 -0.446139 0.394269 0.803444 40.44112 REMARK 350 BIOMT1 28 -0.809027 0.478784 -0.340965 163.98251 REMARK 350 BIOMT2 28 -0.478769 -0.200197 0.854810 43.39886 REMARK 350 BIOMT3 28 0.340987 0.854801 0.391189 -30.90942 REMARK 350 BIOMT1 29 -0.809005 0.519129 0.275746 163.98053 REMARK 350 BIOMT2 29 0.519100 0.410925 0.749443 -47.05478 REMARK 350 BIOMT3 29 0.275729 0.749438 -0.601920 -24.99399 REMARK 350 BIOMT1 30 -0.309002 0.839939 0.446129 118.65682 REMARK 350 BIOMT2 30 0.774664 0.494408 -0.394261 -70.22082 REMARK 350 BIOMT3 30 -0.551729 0.223787 -0.803441 50.01250 REMARK 350 BIOMT1 31 0.809005 -0.478795 0.341001 17.31311 REMARK 350 BIOMT2 31 -0.519100 -0.309819 0.796582 47.05479 REMARK 350 BIOMT3 31 -0.275729 -0.821447 -0.499186 24.99399 REMARK 350 BIOMT1 32 0.809027 -0.519113 -0.275712 17.31113 REMARK 350 BIOMT2 32 0.478769 0.309820 0.821452 -43.39885 REMARK 350 BIOMT3 32 -0.340987 -0.796573 0.499188 30.90942 REMARK 350 BIOMT1 33 0.309037 -0.839919 -0.446144 62.63362 REMARK 350 BIOMT2 33 0.839922 0.461052 -0.286265 -76.13624 REMARK 350 BIOMT3 33 0.446139 -0.286272 0.847945 -40.44112 REMARK 350 BIOMT1 34 0.000004 -0.997869 0.065236 90.64644 REMARK 350 BIOMT2 34 0.065258 -0.065120 -0.995742 -5.91542 REMARK 350 BIOMT3 34 0.997869 0.004237 0.065116 -90.45362 REMARK 350 BIOMT1 35 0.309001 -0.774683 0.551719 62.63682 REMARK 350 BIOMT2 35 -0.774664 -0.541545 -0.326506 70.22082 REMARK 350 BIOMT3 35 0.551729 -0.326520 -0.767457 -50.01250 REMARK 350 BIOMT1 36 -0.308997 -0.774666 0.551727 118.65644 REMARK 350 BIOMT2 36 0.839922 -0.494444 -0.223778 -76.13624 REMARK 350 BIOMT3 36 0.446139 0.394249 0.803441 -40.44112 REMARK 350 BIOMT1 37 0.500010 -0.255591 0.827446 45.32249 REMARK 350 BIOMT2 37 0.361153 -0.806896 -0.467442 -32.73739 REMARK 350 BIOMT3 37 0.787127 0.532542 -0.311148 -71.35055 REMARK 350 BIOMT1 38 1.000000 -0.000044 -0.000006 0.00000 REMARK 350 BIOMT2 38 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 38 0.000000 0.000000 -1.000000 -0.00001 REMARK 350 BIOMT1 39 0.500003 -0.361183 -0.787117 45.32311 REMARK 350 BIOMT2 39 0.255564 -0.806893 0.532559 -23.16603 REMARK 350 BIOMT3 39 -0.827459 -0.467422 -0.311144 75.00649 REMARK 350 BIOMT1 40 -0.309001 -0.839926 -0.446128 118.65683 REMARK 350 BIOMT2 40 0.774664 -0.494442 0.394257 -70.22081 REMARK 350 BIOMT3 40 -0.551729 -0.223763 0.803444 50.01250 REMARK 350 BIOMT1 41 -0.499997 -0.255532 0.827468 135.96994 REMARK 350 BIOMT2 41 0.255564 0.869369 0.422936 -23.16603 REMARK 350 BIOMT3 41 -0.827459 0.422954 -0.369372 75.00649 REMARK 350 BIOMT1 42 0.500003 0.361161 0.787114 45.32311 REMARK 350 BIOMT2 42 0.255564 0.806882 -0.532560 -23.16603 REMARK 350 BIOMT3 42 -0.827459 0.467459 0.311149 75.00648 REMARK 350 BIOMT1 43 0.809005 0.478760 -0.341006 17.31311 REMARK 350 BIOMT2 43 -0.519100 0.309842 -0.796579 47.05479 REMARK 350 BIOMT3 43 -0.275729 0.821460 0.499188 24.99399 REMARK 350 BIOMT1 44 -0.000022 -0.065254 -0.997868 90.64879 REMARK 350 BIOMT2 44 -0.997869 0.065141 -0.004256 90.45364 REMARK 350 BIOMT3 44 0.065258 0.995740 -0.065119 -5.91544 REMARK 350 BIOMT1 45 -0.809029 -0.519071 -0.275712 163.98275 REMARK 350 BIOMT2 45 -0.519100 0.410948 0.749446 47.05479 REMARK 350 BIOMT3 45 -0.275729 0.749450 -0.601918 24.99399 REMARK 350 BIOMT1 46 0.809007 -0.519122 -0.275751 17.31287 REMARK 350 BIOMT2 46 -0.478769 -0.309820 -0.821452 43.39885 REMARK 350 BIOMT3 46 0.340987 0.796573 -0.499188 -30.90943 REMARK 350 BIOMT1 47 0.308997 -0.839937 -0.446136 62.63720 REMARK 350 BIOMT2 47 -0.839922 -0.461052 0.286265 76.13625 REMARK 350 BIOMT3 47 -0.446139 0.286272 -0.847945 40.44112 REMARK 350 BIOMT1 48 -0.000004 -0.997867 0.065280 90.64721 REMARK 350 BIOMT2 48 -0.065258 0.065120 0.995742 5.91543 REMARK 350 BIOMT3 48 -0.997869 -0.004237 -0.065116 90.45362 REMARK 350 BIOMT1 49 0.309032 -0.774657 0.551737 62.63401 REMARK 350 BIOMT2 49 0.774664 0.541545 0.326506 -70.22082 REMARK 350 BIOMT3 49 -0.551729 0.326520 0.767457 50.01250 REMARK 350 BIOMT1 50 0.809029 -0.478777 0.340969 17.31090 REMARK 350 BIOMT2 50 0.519100 0.309819 -0.796582 -47.05479 REMARK 350 BIOMT3 50 0.275729 0.821447 0.499186 -24.99399 REMARK 350 BIOMT1 51 -0.309033 0.839916 0.446151 118.65963 REMARK 350 BIOMT2 51 -0.774664 -0.494408 0.394261 70.22082 REMARK 350 BIOMT3 51 0.551729 -0.223787 0.803441 -50.01249 REMARK 350 BIOMT1 52 0.000004 0.997869 -0.065236 90.64644 REMARK 350 BIOMT2 52 0.065258 0.065118 0.995741 -5.91542 REMARK 350 BIOMT3 52 0.997869 -0.004281 -0.065122 -90.45362 REMARK 350 BIOMT1 53 -0.308997 0.774680 -0.551725 118.65644 REMARK 350 BIOMT2 53 0.839922 0.494407 0.223773 -76.13624 REMARK 350 BIOMT3 53 0.446139 -0.394269 -0.803444 -40.44112 REMARK 350 BIOMT1 54 -0.809007 0.478788 -0.341005 163.98077 REMARK 350 BIOMT2 54 0.478769 0.200197 -0.854810 -43.39885 REMARK 350 BIOMT3 54 -0.340987 -0.854801 -0.391189 30.90943 REMARK 350 BIOMT1 55 -0.809029 0.519107 0.275717 163.98275 REMARK 350 BIOMT2 55 -0.519100 -0.410925 -0.749443 47.05479 REMARK 350 BIOMT3 55 -0.275729 -0.749438 0.601920 24.99399 REMARK 350 BIOMT1 56 0.000022 -0.065262 -0.997868 90.64484 REMARK 350 BIOMT2 56 0.997869 -0.065141 0.004256 -90.45364 REMARK 350 BIOMT3 56 -0.065258 -0.995740 0.065119 5.91544 REMARK 350 BIOMT1 57 -0.809005 -0.519093 -0.275742 163.98054 REMARK 350 BIOMT2 57 0.519100 -0.410948 -0.749446 -47.05478 REMARK 350 BIOMT3 57 0.275729 -0.749450 0.601918 -24.99398 REMARK 350 BIOMT1 58 -0.500003 -0.255573 0.827451 135.97053 REMARK 350 BIOMT2 58 -0.255564 -0.869369 -0.422936 23.16604 REMARK 350 BIOMT3 58 0.827459 -0.422954 0.369372 -75.00648 REMARK 350 BIOMT1 59 0.499997 0.361123 0.787136 45.32371 REMARK 350 BIOMT2 59 -0.255564 -0.806882 0.532560 23.16604 REMARK 350 BIOMT3 59 0.827459 -0.467459 -0.311149 -75.00649 REMARK 350 BIOMT1 60 0.809029 0.478741 -0.340973 17.31089 REMARK 350 BIOMT2 60 0.519100 -0.309842 0.796579 -47.05478 REMARK 350 BIOMT3 60 0.275729 -0.821460 -0.499188 -24.99399 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER 2 1 REMARK 465 PRO 2 2 REMARK 465 SER 2 3 REMARK 465 VAL 2 4 REMARK 465 GLU 2 5 REMARK 465 ALA 2 6 REMARK 465 CYS 2 7 REMARK 465 GLY 2 8 REMARK 465 TYR 2 9 REMARK 465 ASN 4 8 REMARK 465 VAL 4 9 REMARK 465 GLY 4 10 REMARK 465 THR 4 11 REMARK 465 HIS 4 12 REMARK 465 SER 4 13 REMARK 465 THR 4 14 REMARK 465 GLN 4 15 REMARK 465 ASN 4 16 REMARK 465 MET 4 17 REMARK 465 VAL 4 18 REMARK 465 SER 4 19 REMARK 465 ASN 4 20 REMARK 465 GLY 4 21 REMARK 465 SER 4 22 REMARK 465 PHE 4 45 REMARK 465 SER 4 46 REMARK 465 GLN 4 47 REMARK 465 ASP 4 48 REMARK 465 PRO 4 49 REMARK 465 SER 4 50 REMARK 465 LYS 4 51 REMARK 465 PHE 4 52 REMARK 465 THR 4 53 REMARK 465 ASP 4 54 REMARK 465 PRO 4 55 REMARK 465 VAL 4 56 REMARK 465 LYS 4 57 REMARK 465 ASP 4 58 REMARK 465 VAL 4 59 REMARK 465 LEU 4 60 REMARK 465 GLU 4 61 REMARK 465 LYS 4 62 REMARK 465 GLY 4 63 REMARK 465 ILE 4 64 REMARK 465 PRO 4 65 REMARK 465 THR 4 66 REMARK 465 LEU 4 67 REMARK 465 GLN 4 68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP 1 35 -157.01 -160.24 REMARK 500 VAL 1 85 -64.48 -105.06 REMARK 500 THR 1 164 -40.16 -136.25 REMARK 500 ASN 1 212 44.54 -100.95 REMARK 500 CYS 1 247 83.90 48.06 REMARK 500 HIS 1 260 17.63 59.29 REMARK 500 ASN 2 30 -161.65 66.69 REMARK 500 THR 2 48 -46.08 -131.21 REMARK 500 ASP 2 57 -127.81 60.09 REMARK 500 SER 2 73 -17.56 -45.49 REMARK 500 CYS 2 112 100.95 -165.53 REMARK 500 ALA 2 114 -112.71 -138.26 REMARK 500 GLU 2 161 145.63 -38.38 REMARK 500 PHE 2 174 17.72 58.49 REMARK 500 ASP 2 175 12.85 -150.58 REMARK 500 LEU 2 183 -9.36 -59.43 REMARK 500 ASN 2 233 53.41 -153.32 REMARK 500 ARG 2 255 -157.08 -166.18 REMARK 500 LEU 3 25 77.02 -116.93 REMARK 500 TRP 3 27 -11.42 71.64 REMARK 500 ASN 3 56 43.33 -100.39 REMARK 500 LEU 3 127 145.94 179.07 REMARK 500 THR 3 195 -101.42 -119.48 REMARK 500 MET 3 223 84.02 63.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 32004 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH 32006 DISTANCE = 6.29 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN 1 6000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR 4 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W02 1 7002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QJU RELATED DB: PDB REMARK 900 RELATED ID: 1ND3 RELATED DB: PDB REMARK 900 THE STRUCTURE OF HRV16, WHEN COMPLEXED WITH PLECONARIL, ANANTIVIRAL REMARK 900 COMPOUND REMARK 900 RELATED ID: 1QJX RELATED DB: PDB REMARK 900 HUMAN RHINOVIRUS 16 COAT PROTEIN IN COMPLEX WITH ANTIVIRAL COMPOUND REMARK 900 WIN68934 REMARK 900 RELATED ID: 1AYM RELATED DB: PDB REMARK 900 HUMAN RHINOVIRUS 16 COAT PROTEIN AT HIGH RESOLUTION REMARK 900 RELATED ID: 1NCR RELATED DB: PDB REMARK 900 THE STRUCTURE OF RHINOVIRUS 16 WHEN COMPLEXED WITHPLECONARIL, AN REMARK 900 ANTIVIRAL COMPOUND REMARK 900 RELATED ID: 1ND2 RELATED DB: PDB REMARK 900 THE STRUCTURE OF RHINOVIRUS 16 REMARK 900 RELATED ID: 1AYN RELATED DB: PDB REMARK 900 HUMAN RHINOVIRUS 16 COAT PROTEIN REMARK 900 RELATED ID: 1C8M RELATED DB: PDB REMARK 900 REFINED CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS 16 COMPLEXED WITH REMARK 900 VP63843 (PLECONARIL), AN ANTI-PICORNAVIRAL DRUG CURRENTLY IN REMARK 900 CLINICAL TRIALS REMARK 900 RELATED ID: 1TP7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RNA-DEPENDENT RNA POLYMERASE FROMHUMAN REMARK 900 RHINOVIRUS 16 REMARK 900 RELATED ID: 1XR7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RNA-DEPENDENT RNA POLYMERASE 3D FROMHUMAN REMARK 900 RHINOVIRUS SEROTYPE 16 REMARK 900 RELATED ID: 1D3E RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 ( HRV16) COMPLEXED WITH A REMARK 900 TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR REMARK 900 ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR REMARK 900 INTERACTIONS. ALPHA CARBONS ONLY REMARK 900 RELATED ID: 1QJY RELATED DB: PDB REMARK 900 RELATED ID: 1QJZ RELATED DB: PDB REMARK 900 THREE DIMENSIONAL STRUCTURE OF PHYSALIS MOTTLE VIRUS: IMPLICATIONS REMARK 900 FOR THE VIRAL ASSEMBLY DBREF 1QJX 1 1 285 UNP Q82122 POLG_HRV16 569 853 DBREF 1QJX 2 1 261 UNP Q82122 POLG_HRV16 70 330 DBREF 1QJX 3 1 238 UNP Q82122 POLG_HRV16 331 568 DBREF 1QJX 4 1 68 UNP Q82122 POLG_HRV16 2 69 SEQRES 1 1 285 ASN PRO VAL GLU ARG TYR VAL ASP GLU VAL LEU ASN GLU SEQRES 2 1 285 VAL LEU VAL VAL PRO ASN ILE ASN GLN SER HIS PRO THR SEQRES 3 1 285 THR SER ASN ALA ALA PRO VAL LEU ASP ALA ALA GLU THR SEQRES 4 1 285 GLY HIS THR ASN LYS ILE GLN PRO GLU ASP THR ILE GLU SEQRES 5 1 285 THR ARG TYR VAL GLN SER SER GLN THR LEU ASP GLU MET SEQRES 6 1 285 SER VAL GLU SER PHE LEU GLY ARG SER GLY CYS ILE HIS SEQRES 7 1 285 GLU SER VAL LEU ASP ILE VAL ASP ASN TYR ASN ASP GLN SEQRES 8 1 285 SER PHE THR LYS TRP ASN ILE ASN LEU GLN GLU MET ALA SEQRES 9 1 285 GLN ILE ARG ARG LYS PHE GLU MET PHE THR TYR ALA ARG SEQRES 10 1 285 PHE ASP SER GLU ILE THR MET VAL PRO SER VAL ALA ALA SEQRES 11 1 285 LYS ASP GLY HIS ILE GLY HIS ILE VAL MET GLN TYR MET SEQRES 12 1 285 TYR VAL PRO PRO GLY ALA PRO ILE PRO THR THR ARG ASP SEQRES 13 1 285 ASP TYR ALA TRP GLN SER GLY THR ASN ALA SER VAL PHE SEQRES 14 1 285 TRP GLN HIS GLY GLN PRO PHE PRO ARG PHE SER LEU PRO SEQRES 15 1 285 PHE LEU SER ILE ALA SER ALA TYR TYR MET PHE TYR ASP SEQRES 16 1 285 GLY TYR ASP GLY ASP THR TYR LYS SER ARG TYR GLY THR SEQRES 17 1 285 VAL VAL THR ASN ASP MET GLY THR LEU CYS SER ARG ILE SEQRES 18 1 285 VAL THR SER GLU GLN LEU HIS LYS VAL LYS VAL VAL THR SEQRES 19 1 285 ARG ILE TYR HIS LYS ALA LYS HIS THR LYS ALA TRP CYS SEQRES 20 1 285 PRO ARG PRO PRO ARG ALA VAL GLN TYR SER HIS THR HIS SEQRES 21 1 285 THR THR ASN TYR LYS LEU SER SER GLU VAL HIS ASN ASP SEQRES 22 1 285 VAL ALA ILE ARG PRO ARG THR ASN LEU THR THR VAL SEQRES 1 2 261 SER PRO SER VAL GLU ALA CYS GLY TYR SER ASP ARG ILE SEQRES 2 2 261 ILE GLN ILE THR ARG GLY ASP SER THR ILE THR SER GLN SEQRES 3 2 261 ASP VAL ALA ASN ALA VAL VAL GLY TYR GLY VAL TRP PRO SEQRES 4 2 261 HIS TYR LEU THR PRO GLN ASP ALA THR ALA ILE ASP LYS SEQRES 5 2 261 PRO THR GLN PRO ASP THR SER SER ASN ARG PHE TYR THR SEQRES 6 2 261 LEU ASP SER LYS MET TRP ASN SER THR SER LYS GLY TRP SEQRES 7 2 261 TRP TRP LYS LEU PRO ASP ALA LEU LYS ASP MET GLY ILE SEQRES 8 2 261 PHE GLY GLU ASN MET PHE TYR HIS PHE LEU GLY ARG SER SEQRES 9 2 261 GLY TYR THR VAL HIS VAL GLN CYS ASN ALA SER LYS PHE SEQRES 10 2 261 HIS GLN GLY THR LEU LEU VAL VAL MET ILE PRO GLU HIS SEQRES 11 2 261 GLN LEU ALA THR VAL ASN LYS GLY ASN VAL ASN ALA GLY SEQRES 12 2 261 TYR LYS TYR THR HIS PRO GLY GLU ALA GLY ARG GLU VAL SEQRES 13 2 261 GLY THR GLN VAL GLU ASN GLU LYS GLN PRO SER ASP ASP SEQRES 14 2 261 ASN TRP LEU ASN PHE ASP GLY THR LEU LEU GLY ASN LEU SEQRES 15 2 261 LEU ILE PHE PRO HIS GLN PHE ILE ASN LEU ARG SER ASN SEQRES 16 2 261 ASN SER ALA THR LEU ILE VAL PRO TYR VAL ASN ALA VAL SEQRES 17 2 261 PRO MET ASP SER MET VAL ARG HIS ASN ASN TRP SER LEU SEQRES 18 2 261 VAL ILE ILE PRO VAL CYS GLN LEU GLN SER ASN ASN ILE SEQRES 19 2 261 SER ASN ILE VAL PRO ILE THR VAL SER ILE SER PRO MET SEQRES 20 2 261 CYS ALA GLU PHE SER GLY ALA ARG ALA LYS THR VAL VAL SEQRES 21 2 261 GLN SEQRES 1 3 238 GLY LEU PRO VAL TYR VAL THR PRO GLY SER GLY GLN PHE SEQRES 2 3 238 MET THR THR ASP ASP MET GLN SER PRO CYS ALA LEU PRO SEQRES 3 3 238 TRP TYR HIS PRO THR LYS GLU ILE PHE ILE PRO GLY GLU SEQRES 4 3 238 VAL LYS ASN LEU ILE GLU MET CYS GLN VAL ASP THR LEU SEQRES 5 3 238 ILE PRO ILE ASN SER THR GLN SER ASN ILE GLY ASN VAL SEQRES 6 3 238 SER MET TYR THR VAL THR LEU SER PRO GLN THR LYS LEU SEQRES 7 3 238 ALA GLU GLU ILE PHE ALA ILE LYS VAL ASP ILE ALA SER SEQRES 8 3 238 HIS PRO LEU ALA THR THR LEU ILE GLY GLU ILE ALA SER SEQRES 9 3 238 TYR PHE THR HIS TRP THR GLY SER LEU ARG PHE SER PHE SEQRES 10 3 238 MET PHE CYS GLY THR ALA ASN THR THR LEU LYS VAL LEU SEQRES 11 3 238 LEU ALA TYR THR PRO PRO GLY ILE GLY LYS PRO ARG SER SEQRES 12 3 238 ARG LYS GLU ALA MET LEU GLY THR HIS VAL VAL TRP ASP SEQRES 13 3 238 VAL GLY LEU GLN SER THR VAL SER LEU VAL VAL PRO TRP SEQRES 14 3 238 ILE SER ALA SER GLN TYR ARG PHE THR THR PRO ASP THR SEQRES 15 3 238 TYR SER SER ALA GLY TYR ILE THR CYS TRP TYR GLN THR SEQRES 16 3 238 ASN PHE VAL VAL PRO PRO ASN THR PRO ASN THR ALA GLU SEQRES 17 3 238 MET LEU CYS PHE VAL SER GLY CYS LYS ASP PHE CYS LEU SEQRES 18 3 238 ARG MET ALA ARG ASP THR ASP LEU HIS LYS GLN THR GLY SEQRES 19 3 238 PRO ILE THR GLN SEQRES 1 4 68 GLY ALA GLN VAL SER ARG GLN ASN VAL GLY THR HIS SER SEQRES 2 4 68 THR GLN ASN MET VAL SER ASN GLY SER SER LEU ASN TYR SEQRES 3 4 68 PHE ASN ILE ASN TYR PHE LYS ASP ALA ALA SER SER GLY SEQRES 4 4 68 ALA SER ARG LEU ASP PHE SER GLN ASP PRO SER LYS PHE SEQRES 5 4 68 THR ASP PRO VAL LYS ASP VAL LEU GLU LYS GLY ILE PRO SEQRES 6 4 68 THR LEU GLN HET ZN 16000 1 HET W02 17002 24 HET MYR 44000 15 HETNAM ZN ZINC ION HETNAM W02 2,6-DIMETHYL-1-(3-[3-METHYL-5-ISOXAZOLYL]-PROPANYL)-4- HETNAM 2 W02 [4-METHYL-2H-TETRAZOL-2-YL]-PHENOL HETNAM MYR MYRISTIC ACID HETSYN W02 WIN68934 FORMUL 5 ZN ZN 2+ FORMUL 6 W02 C17 H21 N5 O2 FORMUL 7 MYR C14 H28 O2 FORMUL 8 HOH *270(H2 O) HELIX 1 1 ASN 1 1 ASN 1 12 1 12 HELIX 2 2 ALA 1 36 GLY 1 40 5 5 HELIX 3 3 GLN 1 46 ILE 1 51 1 6 HELIX 4 4 LEU 1 62 MET 1 65 5 4 HELIX 5 5 SER 1 66 GLY 1 72 1 7 HELIX 6 6 ASN 1 87 SER 1 92 1 6 HELIX 7 7 MET 1 103 GLU 1 111 1 9 HELIX 8 8 ASP 1 157 SER 1 162 5 6 HELIX 9 9 GLU 1 269 ASP 1 273 5 5 HELIX 10 10 TYR 2 35 VAL 2 37 5 3 HELIX 11 11 PRO 2 56 SER 2 60 5 5 HELIX 12 12 PRO 2 83 LYS 2 87 5 5 HELIX 13 13 MET 2 89 TYR 2 98 1 10 HELIX 14 14 GLY 2 143 HIS 2 148 5 6 HELIX 15 15 PRO 2 149 GLY 2 153 5 5 HELIX 16 16 ASP 2 169 ASN 2 173 5 5 HELIX 17 17 LEU 2 178 PHE 2 185 5 8 HELIX 18 18 LEU 3 43 GLN 3 48 1 6 HELIX 19 19 ASN 3 64 MET 3 67 5 4 HELIX 20 20 THR 3 97 SER 3 104 1 8 HELIX 21 21 SER 3 143 LEU 3 149 1 7 HELIX 22 22 ASP 3 181 SER 3 185 5 5 HELIX 23 23 ASP 4 34 SER 4 38 5 5 SHEET 1 1A 5 LEU 1 34 ASP 1 35 0 SHEET 2 1A 5 THR 3 162 VAL 3 167 -1 O THR 3 162 N ASP 1 35 SHEET 3 1A 5 LEU 3 113 PHE 3 119 -1 O LEU 3 113 N VAL 3 167 SHEET 4 1A 5 ALA 3 207 GLY 3 215 -1 O LEU 3 210 N MET 3 118 SHEET 5 1A 5 THR 3 51 LEU 3 52 -1 O THR 3 51 N VAL 3 213 SHEET 1 1B 5 LEU 1 34 ASP 1 35 0 SHEET 2 1B 5 THR 3 162 VAL 3 167 -1 O THR 3 162 N ASP 1 35 SHEET 3 1B 5 LEU 3 113 PHE 3 119 -1 O LEU 3 113 N VAL 3 167 SHEET 4 1B 5 ALA 3 207 GLY 3 215 -1 O LEU 3 210 N MET 3 118 SHEET 5 1B 5 THR 3 69 LEU 3 72 -1 O VAL 3 70 N MET 3 209 SHEET 1 1C 3 GLY 1 75 ASP 1 83 0 SHEET 2 1C 3 VAL 1 230 PRO 1 248 -1 O VAL 1 232 N LEU 1 82 SHEET 3 1C 3 PHE 1 113 ALA 1 130 -1 N THR 1 114 O TRP 1 246 SHEET 1 1D 2 GLY 1 75 ASP 1 83 0 SHEET 2 1D 2 VAL 1 230 PRO 1 248 -1 O VAL 1 232 N LEU 1 82 SHEET 1 1E 4 PHE 1 93 ASN 1 97 0 SHEET 2 1E 4 THR 1 216 ILE 1 221 -1 O LEU 1 217 N TRP 1 96 SHEET 3 1E 4 VAL 1 139 VAL 1 145 -1 O GLN 1 141 N ARG 1 220 SHEET 4 1E 4 SER 1 167 GLN 1 171 -1 O VAL 1 168 N TYR 1 142 SHEET 1 2A 2 ILE 2 14 ARG 2 18 0 SHEET 2 2A 2 SER 2 21 SER 2 25 -1 O SER 2 21 N ARG 2 18 SHEET 1 2B 5 VAL 2 32 VAL 2 33 0 SHEET 2 2B 5 SER 2 197 VAL 2 202 1 O THR 2 199 N VAL 2 32 SHEET 3 2B 5 HIS 2 99 GLN 2 111 -1 O TYR 2 106 N VAL 2 202 SHEET 4 2B 5 VAL 2 238 ALA 2 254 -1 O THR 2 241 N GLN 2 111 SHEET 5 2B 5 TYR 2 64 THR 2 65 -1 O TYR 2 64 N ILE 2 244 SHEET 1 2C 5 VAL 2 32 VAL 2 33 0 SHEET 2 2C 5 SER 2 197 VAL 2 202 1 O THR 2 199 N VAL 2 32 SHEET 3 2C 5 HIS 2 99 GLN 2 111 -1 O TYR 2 106 N VAL 2 202 SHEET 4 2C 5 VAL 2 238 ALA 2 254 -1 O THR 2 241 N GLN 2 111 SHEET 5 2C 5 LYS 2 69 TRP 2 71 -1 O LYS 2 69 N ILE 2 240 SHEET 1 2D 5 ARG 2 154 GLU 2 155 0 SHEET 2 2D 5 TRP 2 78 LEU 2 82 -1 O TRP 2 79 N ARG 2 154 SHEET 3 2D 5 TRP 2 219 GLN 2 230 -1 O TRP 2 219 N LEU 2 82 SHEET 4 2D 5 GLN 2 119 PRO 2 128 -1 O GLN 2 119 N GLN 2 230 SHEET 5 2D 5 HIS 2 187 ASN 2 191 -1 O GLN 2 188 N VAL 2 124 SHEET 1 3A 4 GLU 3 81 LYS 3 86 0 SHEET 2 3A 4 TYR 3 188 TYR 3 193 -1 O ILE 3 189 N ILE 3 85 SHEET 3 3A 4 LYS 3 128 THR 3 134 -1 O LEU 3 130 N TRP 3 192 SHEET 4 3A 4 THR 3 151 ASP 3 156 -1 O THR 3 151 N TYR 3 133 SHEET 1 3B 3 ARG 3 176 PHE 3 177 0 SHEET 2 3B 3 PHE 3 106 THR 3 110 -1 O TRP 3 109 N ARG 3 176 SHEET 3 3B 3 CYS 3 220 ALA 3 224 -1 O CYS 3 220 N THR 3 110 SHEET 1 4A 2 ALA 4 2 SER 4 5 0 SHEET 2 4A 2 TYR 4 26 ILE 4 29 -1 O TYR 4 26 N SER 4 5 LINK N GLY 4 1 C1 MYR 44000 1555 1555 1.32 CISPEP 1 LEU 2 82 PRO 2 83 0 0.28 CISPEP 2 HIS 3 92 PRO 3 93 0 2.19 SITE 1 AC1 1 HIS 1 134 SITE 1 AC2 1 GLY 4 1 SITE 1 AC3 9 ILE 1 98 TYR 1 144 ALA 1 166 PHE 1 179 SITE 2 AC3 9 LEU 1 181 LEU 1 184 MET 1 214 LEU 1 217 SITE 3 AC3 9 HOH 12089 CRYST1 362.600 347.100 334.900 90.00 90.00 90.00 P 2 21 21 120 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.002758 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002986 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.499997 -0.361145 -0.787139 45.32371 MTRIX2 2 -0.255564 0.806893 -0.532559 23.16603 MTRIX3 2 0.827459 0.467422 0.311144 -75.00649 MTRIX1 3 -0.309032 -0.839903 -0.446149 118.65964 MTRIX2 3 -0.774664 0.494442 -0.394257 70.22082 MTRIX3 3 0.551729 0.223763 -0.803444 -50.01250 MTRIX1 4 -0.309037 -0.774647 0.551732 118.66002 MTRIX2 4 -0.839922 0.494444 0.223778 76.13625 MTRIX3 4 -0.446139 -0.394249 -0.803441 40.44112 MTRIX1 5 0.499990 -0.255558 0.827468 45.32433 MTRIX2 5 -0.361153 0.806896 0.467442 32.73739 MTRIX3 5 -0.787127 -0.532542 0.311148 71.35055 MTRIX1 6 -0.809027 -0.478748 0.340970 163.98251 MTRIX2 6 -0.478769 0.200218 -0.854807 43.39885 MTRIX3 6 0.340987 -0.854816 -0.391191 -30.90942 MTRIX1 7 -0.000022 0.065254 0.997868 90.64880 MTRIX2 7 -0.997869 -0.065097 0.004261 90.45364 MTRIX3 7 0.065258 -0.995743 0.065119 -5.91543 MTRIX1 8 0.809007 0.519087 0.275747 17.31287 MTRIX2 8 -0.478769 0.309841 0.821455 43.39886 MTRIX3 8 0.340987 -0.796588 0.499186 -30.90942 MTRIX1 9 0.500010 0.255569 -0.827448 45.32249 MTRIX2 9 0.361153 0.806880 0.467440 -32.73739 MTRIX3 9 0.787127 -0.532577 0.311144 -71.35055 MTRIX1 10 -0.499990 -0.361127 -0.787138 135.96931 MTRIX2 10 0.361153 0.739129 -0.568548 -32.73739 MTRIX3 10 0.787127 -0.568564 -0.239139 -71.35055 MTRIX1 11 0.309037 0.839905 0.446142 62.63362 MTRIX2 11 0.839922 -0.461089 0.286260 -76.13624 MTRIX3 11 0.446139 0.286252 -0.847948 -40.44113 MTRIX1 12 0.309032 0.774644 -0.551739 62.63401 MTRIX2 12 0.774664 -0.541579 -0.326510 -70.22082 MTRIX3 12 -0.551729 -0.326496 -0.767454 50.01250 MTRIX1 13 -0.499997 0.255554 -0.827465 135.96993 MTRIX2 13 0.255564 -0.869380 -0.422937 -23.16603 MTRIX3 13 -0.827459 -0.422918 0.369377 75.00649 MTRIX1 14 -1.000000 0.000001 0.000008 181.29364 MTRIX2 14 0.000000 -0.991483 0.130238 0.00001 MTRIX3 14 0.000000 0.130238 0.991483 0.00000 MTRIX1 15 -0.499990 0.361149 0.787141 135.96931 MTRIX2 15 0.361153 -0.739145 0.568546 -32.73738 MTRIX3 15 0.787127 0.568529 0.239135 -71.35055 MTRIX1 16 -0.000004 0.997867 -0.065280 90.64720 MTRIX2 16 -0.065258 -0.065117 -0.995741 5.91542 MTRIX3 16 -0.997869 0.004281 0.065122 90.45362 MTRIX1 17 -0.309037 0.774660 -0.551731 118.66002 MTRIX2 17 -0.839922 -0.494407 -0.223773 76.13625 MTRIX3 17 -0.446139 0.394269 0.803444 40.44112 MTRIX1 18 -0.809027 0.478784 -0.340965 163.98251 MTRIX2 18 -0.478769 -0.200197 0.854810 43.39886 MTRIX3 18 0.340987 0.854801 0.391189 -30.90942 MTRIX1 19 -0.809005 0.519129 0.275746 163.98053 MTRIX2 19 0.519100 0.410925 0.749443 -47.05478 MTRIX3 19 0.275729 0.749438 -0.601920 -24.99399 MTRIX1 20 -0.309002 0.839939 0.446129 118.65682 MTRIX2 20 0.774664 0.494408 -0.394261 -70.22082 MTRIX3 20 -0.551729 0.223787 -0.803441 50.01250 MTRIX1 21 0.809005 -0.478795 0.341001 17.31311 MTRIX2 21 -0.519100 -0.309819 0.796582 47.05479 MTRIX3 21 -0.275729 -0.821447 -0.499186 24.99399 MTRIX1 22 0.809027 -0.519113 -0.275712 17.31113 MTRIX2 22 0.478769 0.309820 0.821452 -43.39885 MTRIX3 22 -0.340987 -0.796573 0.499188 30.90942 MTRIX1 23 0.309037 -0.839919 -0.446144 62.63362 MTRIX2 23 0.839922 0.461052 -0.286265 -76.13624 MTRIX3 23 0.446139 -0.286272 0.847945 -40.44112 MTRIX1 24 0.000004 -0.997869 0.065236 90.64644 MTRIX2 24 0.065258 -0.065120 -0.995742 -5.91542 MTRIX3 24 0.997869 0.004237 0.065116 -90.45362 MTRIX1 25 0.309001 -0.774683 0.551719 62.63682 MTRIX2 25 -0.774664 -0.541545 -0.326506 70.22082 MTRIX3 25 0.551729 -0.326520 -0.767457 -50.01250 MTRIX1 26 -0.499997 -0.255532 0.827468 135.96994 MTRIX2 26 0.255564 0.869369 0.422936 -23.16603 MTRIX3 26 -0.827459 0.422954 -0.369372 75.00649 MTRIX1 27 0.500003 0.361161 0.787114 45.32311 MTRIX2 27 0.255564 0.806882 -0.532560 -23.16603 MTRIX3 27 -0.827459 0.467459 0.311149 75.00648 MTRIX1 28 0.809005 0.478760 -0.341006 17.31311 MTRIX2 28 -0.519100 0.309842 -0.796579 47.05479 MTRIX3 28 -0.275729 0.821460 0.499188 24.99399 MTRIX1 29 -0.000022 -0.065254 -0.997868 90.64879 MTRIX2 29 -0.997869 0.065141 -0.004256 90.45364 MTRIX3 29 0.065258 0.995740 -0.065119 -5.91544 MTRIX1 30 -0.809029 -0.519071 -0.275712 163.98275 MTRIX2 30 -0.519100 0.410948 0.749446 47.05479 MTRIX3 30 -0.275729 0.749450 -0.601918 24.99399