PDB Short entry for 1QLI HEADER METAL BINDING PROTEIN 17-FEB-97 1QLI TITLE QUAIL CYSTEINE AND GLYCINE-RICH PROTEIN, NMR, MINIMIZED AVERAGE TITLE 2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE AND GLYCINE-RICH PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL LIM DOMAIN RESIDUES 82 - 194; COMPND 5 SYNONYM: QCRP2(LIM2), ZN(II)-QCRP2(LIM2); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COTURNIX JAPONICA; SOURCE 3 ORGANISM_COMMON: JAPANESE QUAIL; SOURCE 4 ORGANISM_TAXID: 93934; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D-QCRP2(LIM2) KEYWDS LIM DOMAIN CONTAINING PROTEINS, METAL-BINDING PROTEIN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR AUTHOR R.KONRAT,R.WEISKIRCHEN,B.KRAUTLER,K.BISTER REVDAT 3 02-MAR-22 1QLI 1 KEYWDS REMARK LINK REVDAT 2 24-FEB-09 1QLI 1 VERSN REVDAT 1 20-AUG-97 1QLI 0 JRNL AUTH R.KONRAT,R.WEISKIRCHEN,B.KRAUTLER,K.BISTER JRNL TITL SOLUTION STRUCTURE OF THE CARBOXYL-TERMINAL LIM DOMAIN FROM JRNL TITL 2 QUAIL CYSTEINE-RICH PROTEIN CRP2. JRNL REF J.BIOL.CHEM. V. 272 12001 1997 JRNL REFN ISSN 0021-9258 JRNL PMID 9115265 JRNL DOI 10.1074/JBC.272.18.12001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175918. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 299 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-NOESY-HSQC; 3D 15N-TOCSY REMARK 210 -HSQC; 2D NOESY; 2D TOCSY; 2D X- REMARK 210 FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS 500 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : DG/SA/EM REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 MET A 82 REMARK 465 ASP A 83 REMARK 465 ARG A 84 REMARK 465 GLY A 85 REMARK 465 GLU A 86 REMARK 465 ARG A 87 REMARK 465 LEU A 88 REMARK 465 GLY A 89 REMARK 465 ILE A 90 REMARK 465 LYS A 91 REMARK 465 PRO A 92 REMARK 465 GLU A 93 REMARK 465 SER A 94 REMARK 465 SER A 95 REMARK 465 PRO A 96 REMARK 465 SER A 97 REMARK 465 PRO A 98 REMARK 465 HIS A 99 REMARK 465 ARG A 100 REMARK 465 PRO A 101 REMARK 465 THR A 102 REMARK 465 THR A 103 REMARK 465 ASN A 104 REMARK 465 PRO A 105 REMARK 465 ASN A 106 REMARK 465 THR A 107 REMARK 465 SER A 108 REMARK 465 LYS A 109 REMARK 465 PHE A 110 REMARK 465 ALA A 111 REMARK 465 GLN A 112 REMARK 465 LYS A 113 REMARK 465 PHE A 114 REMARK 465 GLY A 115 REMARK 465 GLY A 116 REMARK 465 PHE A 176 REMARK 465 GLY A 177 REMARK 465 PRO A 178 REMARK 465 LYS A 179 REMARK 465 GLY A 180 REMARK 465 PHE A 181 REMARK 465 GLY A 182 REMARK 465 TYR A 183 REMARK 465 GLY A 184 REMARK 465 GLN A 185 REMARK 465 GLY A 186 REMARK 465 ALA A 187 REMARK 465 GLY A 188 REMARK 465 ALA A 189 REMARK 465 LEU A 190 REMARK 465 VAL A 191 REMARK 465 HIS A 192 REMARK 465 ALA A 193 REMARK 465 GLN A 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 121 CB SER A 121 OG 0.114 REMARK 500 SER A 126 CB SER A 126 OG 0.112 REMARK 500 HIS A 141 CG HIS A 141 CD2 0.058 REMARK 500 SER A 156 CB SER A 156 OG 0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 122 -62.40 -101.31 REMARK 500 TYR A 128 -25.35 -160.17 REMARK 500 ALA A 129 88.85 -163.23 REMARK 500 ALA A 130 -115.22 -160.87 REMARK 500 ASN A 143 -27.64 173.12 REMARK 500 SER A 156 155.24 76.22 REMARK 500 THR A 158 113.57 -172.90 REMARK 500 LEU A 159 -141.84 -168.09 REMARK 500 GLU A 165 -142.10 -135.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 196 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 120 SG REMARK 620 2 CYS A 123 SG 107.6 REMARK 620 3 HIS A 141 ND1 108.9 108.7 REMARK 620 4 CYS A 144 SG 111.1 109.2 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 195 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 147 SG REMARK 620 2 CYS A 150 SG 106.8 REMARK 620 3 CYS A 168 SG 108.3 111.1 REMARK 620 4 CYS A 171 SG 111.3 109.7 109.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZN1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: FIRST ZINC BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: SECOND ZINC BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 196 DBREF 1QLI A 82 194 UNP Q05158 CSRP2_COTJA 81 193 SEQRES 1 A 113 MET ASP ARG GLY GLU ARG LEU GLY ILE LYS PRO GLU SER SEQRES 2 A 113 SER PRO SER PRO HIS ARG PRO THR THR ASN PRO ASN THR SEQRES 3 A 113 SER LYS PHE ALA GLN LYS PHE GLY GLY ALA GLU LYS CYS SEQRES 4 A 113 SER ARG CYS GLY ASP SER VAL TYR ALA ALA GLU LYS VAL SEQRES 5 A 113 ILE GLY ALA GLY LYS PRO TRP HIS LYS ASN CYS PHE ARG SEQRES 6 A 113 CYS ALA LYS CYS GLY LYS SER LEU GLU SER THR THR LEU SEQRES 7 A 113 THR GLU LYS GLU GLY GLU ILE TYR CYS LYS GLY CYS TYR SEQRES 8 A 113 ALA LYS ASN PHE GLY PRO LYS GLY PHE GLY TYR GLY GLN SEQRES 9 A 113 GLY ALA GLY ALA LEU VAL HIS ALA GLN HET ZN A 195 1 HET ZN A 196 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 GLY A 170 LYS A 174 1 5 SHEET 1 A 2 GLU A 118 CYS A 120 0 SHEET 2 A 2 GLY A 124 TYR A 128 -1 SHEET 1 B 2 LYS A 132 GLY A 135 0 SHEET 2 B 2 LYS A 138 LYS A 142 -1 SHEET 1 C 2 PHE A 145 CYS A 147 0 SHEET 2 C 2 LYS A 152 LEU A 154 -1 SHEET 1 D 2 THR A 160 LYS A 162 0 SHEET 2 D 2 GLU A 165 LYS A 169 -1 LINK SG CYS A 120 ZN ZN A 196 1555 1555 2.28 LINK SG CYS A 123 ZN ZN A 196 1555 1555 2.29 LINK ND1 HIS A 141 ZN ZN A 196 1555 1555 2.00 LINK SG CYS A 144 ZN ZN A 196 1555 1555 2.30 LINK SG CYS A 147 ZN ZN A 195 1555 1555 2.27 LINK SG CYS A 150 ZN ZN A 195 1555 1555 2.29 LINK SG CYS A 168 ZN ZN A 195 1555 1555 2.28 LINK SG CYS A 171 ZN ZN A 195 1555 1555 2.28 SITE 1 ZN1 4 CYS A 120 CYS A 123 HIS A 141 CYS A 144 SITE 1 ZN2 4 CYS A 147 CYS A 150 CYS A 168 CYS A 171 SITE 1 AC1 4 CYS A 147 CYS A 150 CYS A 168 CYS A 171 SITE 1 AC2 4 CYS A 120 CYS A 123 HIS A 141 CYS A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000