PDB Short entry for 1QRD HEADER QUINONE-REDUCTASE (CYTOSOLIC) 28-JUL-95 1QRD TITLE QUINONE REDUCTASE/FAD/CIBACRON BLUE/DUROQUINONE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINONE-REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DT-DIAPHORASE; COMPND 5 EC: 1.6.99.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS RATTUS; SOURCE 3 ORGANISM_COMMON: BLACK RAT; SOURCE 4 ORGANISM_TAXID: 10117 KEYWDS QUINONE-REDUCTASE (CYTOSOLIC), OXIDOREDUCTASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.LI,M.A.BIANCHET,P.TALALAY,L.M.AMZEL REVDAT 4 14-FEB-24 1QRD 1 REMARK REVDAT 3 13-JUL-11 1QRD 1 VERSN REVDAT 2 24-FEB-09 1QRD 1 VERSN REVDAT 1 14-OCT-96 1QRD 0 JRNL AUTH R.LI,M.A.BIANCHET,P.TALALAY,L.M.AMZEL JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF NAD(P)H:QUINONE JRNL TITL 2 REDUCTASE, A FLAVOPROTEIN INVOLVED IN CANCER CHEMOPROTECTION JRNL TITL 3 AND CHEMOTHERAPY: MECHANISM OF THE TWO-ELECTRON REDUCTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 92 8846 1995 JRNL REFN ISSN 0027-8424 JRNL PMID 7568029 JRNL DOI 10.1073/PNAS.92.19.8846 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 21737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 232 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 3.120 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.000 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.500 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19 REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QRD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23775 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.99496 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.15450 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.99496 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 44.15450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.98991 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 88.30900 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 2 CA VAL A 2 CB 0.147 REMARK 500 HIS A 161 NE2 HIS A 161 CD2 -0.070 REMARK 500 HIS A 257 NE2 HIS A 257 CD2 -0.066 REMARK 500 HIS B 257 NE2 HIS B 257 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 2 CG1 - CB - CG2 ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG A 3 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG A 3 N - CA - C ANGL. DEV. = 20.8 DEGREES REMARK 500 ARG A 4 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 TRP A 34 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP A 34 CE2 - CD2 - CG ANGL. DEV. = -6.5 DEGREES REMARK 500 TRP A 34 CG - CD2 - CE3 ANGL. DEV. = 5.9 DEGREES REMARK 500 TYR A 42 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 THR A 56 CA - CB - CG2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 SER A 81 N - CA - CB ANGL. DEV. = -9.8 DEGREES REMARK 500 TRP A 105 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 105 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP A 105 CG - CD2 - CE3 ANGL. DEV. = 6.1 DEGREES REMARK 500 VAL A 108 N - CA - CB ANGL. DEV. = -14.6 DEGREES REMARK 500 TRP A 115 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP A 115 CB - CG - CD1 ANGL. DEV. = -8.7 DEGREES REMARK 500 TRP A 115 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP A 115 CG - CD2 - CE3 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR A 128 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLN A 138 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 VAL A 160 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 TRP A 169 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 169 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 200 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 GLN A 202 CG - CD - NE2 ANGL. DEV. = 15.3 DEGREES REMARK 500 TRP A 207 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 VAL A 214 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 TRP A 215 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 215 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 LYS A 261 CB - CG - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG B 14 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TRP B 34 CD1 - CG - CD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 TRP B 34 CB - CG - CD1 ANGL. DEV. = -9.4 DEGREES REMARK 500 TRP B 34 CE2 - CD2 - CG ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP B 34 CG - CD2 - CE3 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 52 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 52 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 79 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 79 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 VAL B 108 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 TRP B 115 CG - CD2 - CE3 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 67 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 53 1.29 -64.17 REMARK 500 TYR A 132 -114.23 57.24 REMARK 500 SER A 254 -169.34 -173.79 REMARK 500 HIS A 257 50.07 -108.66 REMARK 500 ARG A 272 140.42 90.15 REMARK 500 VAL B 2 21.01 -148.80 REMARK 500 ASN B 53 8.91 -69.64 REMARK 500 THR B 130 37.70 -140.67 REMARK 500 TYR B 132 -116.03 51.30 REMARK 500 GLN B 138 -38.14 -38.19 REMARK 500 SER B 254 -168.58 -176.30 REMARK 500 HIS B 257 47.62 -105.29 REMARK 500 ALA B 265 109.83 122.18 REMARK 500 ARG B 272 151.00 71.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 42 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CBD A 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DQN A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CBD B 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DQN B 276 DBREF 1QRD A 1 273 UNP P05982 NQO1_RAT 1 273 DBREF 1QRD B 1 273 UNP P05982 NQO1_RAT 1 273 SEQRES 1 A 273 ALA VAL ARG ARG ALA LEU ILE VAL LEU ALA HIS ALA GLU SEQRES 2 A 273 ARG THR SER PHE ASN TYR ALA MET LYS GLU ALA ALA VAL SEQRES 3 A 273 GLU ALA LEU LYS LYS LYS GLY TRP GLU VAL VAL GLU SER SEQRES 4 A 273 ASP LEU TYR ALA MET ASN PHE ASN PRO LEU ILE SER ARG SEQRES 5 A 273 ASN ASP ILE THR GLY GLU PRO LYS ASP SER GLU ASN PHE SEQRES 6 A 273 GLN TYR PRO VAL GLU SER SER LEU ALA TYR LYS GLU GLY SEQRES 7 A 273 ARG LEU SER PRO ASP ILE VAL ALA GLU GLN LYS LYS LEU SEQRES 8 A 273 GLU ALA ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU TYR SEQRES 9 A 273 TRP PHE GLY VAL PRO ALA ILE LEU LYS GLY TRP PHE GLU SEQRES 10 A 273 ARG VAL LEU VAL ALA GLY PHE ALA TYR THR TYR ALA THR SEQRES 11 A 273 MET TYR ASP LYS GLY PRO PHE GLN ASN LYS LYS THR LEU SEQRES 12 A 273 LEU SER ILE THR THR GLY GLY SER GLY SER MET TYR SER SEQRES 13 A 273 LEU GLN GLY VAL HIS GLY ASP MET ASN VAL ILE LEU TRP SEQRES 14 A 273 PRO ILE GLN SER GLY ILE LEU ARG PHE CYS GLY PHE GLN SEQRES 15 A 273 VAL LEU GLU PRO GLN LEU VAL TYR SER ILE GLY HIS THR SEQRES 16 A 273 PRO PRO ASP ALA ARG VAL GLN VAL LEU GLU GLY TRP LYS SEQRES 17 A 273 LYS ARG LEU GLU THR VAL TRP GLU GLU SER PRO LEU TYR SEQRES 18 A 273 PHE ALA PRO SER SER LEU PHE ASP LEU ASN PHE GLN ALA SEQRES 19 A 273 GLY PHE LEU LEU LYS LYS GLU VAL GLN GLU GLU GLN LYS SEQRES 20 A 273 LYS ASN LYS PHE GLY LEU SER VAL GLY HIS HIS LEU GLY SEQRES 21 A 273 LYS SER ILE PRO ALA ASP ASN GLN ILE LYS ALA ARG LYS SEQRES 1 B 273 ALA VAL ARG ARG ALA LEU ILE VAL LEU ALA HIS ALA GLU SEQRES 2 B 273 ARG THR SER PHE ASN TYR ALA MET LYS GLU ALA ALA VAL SEQRES 3 B 273 GLU ALA LEU LYS LYS LYS GLY TRP GLU VAL VAL GLU SER SEQRES 4 B 273 ASP LEU TYR ALA MET ASN PHE ASN PRO LEU ILE SER ARG SEQRES 5 B 273 ASN ASP ILE THR GLY GLU PRO LYS ASP SER GLU ASN PHE SEQRES 6 B 273 GLN TYR PRO VAL GLU SER SER LEU ALA TYR LYS GLU GLY SEQRES 7 B 273 ARG LEU SER PRO ASP ILE VAL ALA GLU GLN LYS LYS LEU SEQRES 8 B 273 GLU ALA ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU TYR SEQRES 9 B 273 TRP PHE GLY VAL PRO ALA ILE LEU LYS GLY TRP PHE GLU SEQRES 10 B 273 ARG VAL LEU VAL ALA GLY PHE ALA TYR THR TYR ALA THR SEQRES 11 B 273 MET TYR ASP LYS GLY PRO PHE GLN ASN LYS LYS THR LEU SEQRES 12 B 273 LEU SER ILE THR THR GLY GLY SER GLY SER MET TYR SER SEQRES 13 B 273 LEU GLN GLY VAL HIS GLY ASP MET ASN VAL ILE LEU TRP SEQRES 14 B 273 PRO ILE GLN SER GLY ILE LEU ARG PHE CYS GLY PHE GLN SEQRES 15 B 273 VAL LEU GLU PRO GLN LEU VAL TYR SER ILE GLY HIS THR SEQRES 16 B 273 PRO PRO ASP ALA ARG VAL GLN VAL LEU GLU GLY TRP LYS SEQRES 17 B 273 LYS ARG LEU GLU THR VAL TRP GLU GLU SER PRO LEU TYR SEQRES 18 B 273 PHE ALA PRO SER SER LEU PHE ASP LEU ASN PHE GLN ALA SEQRES 19 B 273 GLY PHE LEU LEU LYS LYS GLU VAL GLN GLU GLU GLN LYS SEQRES 20 B 273 LYS ASN LYS PHE GLY LEU SER VAL GLY HIS HIS LEU GLY SEQRES 21 B 273 LYS SER ILE PRO ALA ASP ASN GLN ILE LYS ALA ARG LYS HET FAD A 274 53 HET CBD A 275 51 HET DQN A 276 12 HET FAD B 274 53 HET CBD B 275 51 HET DQN B 276 12 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CBD CIBACRON BLUE HETNAM DQN DUROQUINONE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 CBD 2(C29 H20 CL N7 O11 S3) FORMUL 5 DQN 2(C10 H12 O2) FORMUL 9 HOH *48(H2 O) HELIX 1 1 PHE A 17 LYS A 31 1 15 HELIX 2 2 ARG A 52 ASP A 54 5 3 HELIX 3 3 TYR A 67 GLU A 77 1 11 HELIX 4 4 PRO A 82 ALA A 93 1 12 HELIX 5 5 ALA A 110 VAL A 119 1 10 HELIX 6 6 TYR A 132 LYS A 134 5 3 HELIX 7 7 SER A 153 TYR A 155 5 3 HELIX 8 8 MET A 164 GLN A 172 1 9 HELIX 9 9 ILE A 192 HIS A 194 5 3 HELIX 10 10 PRO A 197 GLU A 212 1 16 HELIX 11 11 VAL A 214 GLU A 216 5 3 HELIX 12 12 SER A 225 LEU A 227 5 3 HELIX 13 13 LYS A 240 LYS A 248 1 9 HELIX 14 14 PHE B 17 LYS B 31 1 15 HELIX 15 15 LEU B 41 MET B 44 5 4 HELIX 16 16 ARG B 52 ASP B 54 5 3 HELIX 17 17 SER B 62 ASN B 64 5 3 HELIX 18 18 TYR B 67 LYS B 76 1 10 HELIX 19 19 PRO B 82 ALA B 93 1 12 HELIX 20 20 ALA B 110 VAL B 119 1 10 HELIX 21 21 TYR B 132 LYS B 134 5 3 HELIX 22 22 SER B 153 TYR B 155 5 3 HELIX 23 23 MET B 164 GLN B 172 1 9 HELIX 24 24 LEU B 176 CYS B 179 1 4 HELIX 25 25 ILE B 192 HIS B 194 5 3 HELIX 26 26 PRO B 197 GLU B 212 1 16 HELIX 27 27 VAL B 214 GLU B 216 5 3 HELIX 28 28 SER B 225 LEU B 227 5 3 HELIX 29 29 LYS B 240 LYS B 248 1 9 SHEET 1 A 5 GLU A 35 ASP A 40 0 SHEET 2 A 5 ARG A 4 LEU A 9 1 N ALA A 5 O GLU A 35 SHEET 3 A 5 LEU A 96 PRO A 102 1 N LEU A 96 O LEU A 6 SHEET 4 A 5 LYS A 141 THR A 147 1 N LYS A 141 O VAL A 97 SHEET 5 A 5 GLN A 187 VAL A 189 1 N GLN A 187 O ILE A 146 SHEET 1 B 5 GLU B 35 ASP B 40 0 SHEET 2 B 5 ARG B 4 ALA B 10 1 N ALA B 5 O GLU B 35 SHEET 3 B 5 LEU B 96 PRO B 102 1 N LEU B 96 O LEU B 6 SHEET 4 B 5 LYS B 141 THR B 147 1 N LYS B 141 O VAL B 97 SHEET 5 B 5 GLN B 187 VAL B 189 1 N GLN B 187 O ILE B 146 SITE 1 AC1 22 HIS A 11 THR A 15 SER A 16 PHE A 17 SITE 2 AC1 22 ASN A 18 ALA A 20 GLN A 66 PRO A 102 SITE 3 AC1 22 LEU A 103 TYR A 104 TRP A 105 PHE A 106 SITE 4 AC1 22 THR A 147 THR A 148 GLY A 149 GLY A 150 SITE 5 AC1 22 TYR A 155 ILE A 192 ARG A 200 CBD A 275 SITE 6 AC1 22 DQN A 276 HOH A 294 SITE 1 AC2 13 PRO A 68 TYR A 128 ALA A 129 LYS A 134 SITE 2 AC2 13 GLY A 149 GLY A 193 HIS A 194 LEU A 230 SITE 3 AC2 13 ASN A 231 PHE A 232 PHE A 236 FAD A 274 SITE 4 AC2 13 DQN A 276 SITE 1 AC3 10 TRP A 105 PHE A 106 TYR A 126 TYR A 128 SITE 2 AC3 10 TYR A 155 HIS A 161 GLY A 174 PHE A 178 SITE 3 AC3 10 FAD A 274 CBD A 275 SITE 1 AC4 22 HIS B 11 THR B 15 SER B 16 PHE B 17 SITE 2 AC4 22 ASN B 18 ALA B 20 ASN B 64 GLN B 66 SITE 3 AC4 22 PRO B 102 LEU B 103 TYR B 104 TRP B 105 SITE 4 AC4 22 PHE B 106 THR B 147 THR B 148 GLY B 149 SITE 5 AC4 22 GLY B 150 TYR B 155 ARG B 200 CBD B 275 SITE 6 AC4 22 DQN B 276 HOH B 293 SITE 1 AC5 11 PRO B 68 TYR B 128 ALA B 129 GLY B 149 SITE 2 AC5 11 HIS B 194 LEU B 230 ASN B 231 PHE B 232 SITE 3 AC5 11 PHE B 236 FAD B 274 DQN B 276 SITE 1 AC6 10 TRP B 105 PHE B 106 TYR B 126 TYR B 128 SITE 2 AC6 10 TYR B 155 HIS B 161 GLY B 174 PHE B 178 SITE 3 AC6 10 FAD B 274 CBD B 275 CRYST1 72.000 107.000 88.400 90.00 92.60 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013889 0.000000 0.000631 0.00000 SCALE2 0.000000 0.009346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011324 0.00000