PDB Short entry for 1QWM HEADER OXIDOREDUCTASE 02-SEP-03 1QWM TITLE STRUCTURE OF HELICOBACTER PYLORI CATALASE WITH FORMIC ACID BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: KATA CATALASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: KATA (HP0875); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: UM255; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSO100 KEYWDS BETA BARREL, AZIDE COMPLEX, FORMATE COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.C.LOEWEN,X.CARPENA,R.PEREZ-LUQUE,C.ROVIRA,R.HAAS,S.ODENBREIT, AUTHOR 2 P.NICHOLLS,I.FITA REVDAT 4 16-AUG-23 1QWM 1 REMARK LINK REVDAT 3 13-JUL-11 1QWM 1 VERSN REVDAT 2 24-FEB-09 1QWM 1 VERSN REVDAT 1 30-MAR-04 1QWM 0 JRNL AUTH P.C.LOEWEN,X.CARPENA,C.ROVIRA,A.IVANCICH,R.PEREZ-LUQUE, JRNL AUTH 2 R.HAAS,S.OBENBREIT,P.NICHOLLS,I.FITA JRNL TITL STRUCTURE OF HELICOBACTER PYLORI CATALASE, WITH AND WITHOUT JRNL TITL 2 FORMIC ACID BOUND, AT 1.6 A RESOLUTION JRNL REF BIOCHEMISTRY V. 43 3089 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15023060 JRNL DOI 10.1021/BI035663I REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 118512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6282 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8128 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 429 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 197 REMARK 3 SOLVENT ATOMS : 933 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.698 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8503 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11480 ; 1.612 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 980 ; 6.067 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1128 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6641 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4021 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 369 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 126 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4976 ; 0.924 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7948 ; 1.453 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3527 ; 2.319 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3532 ; 3.540 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 490 6 REMARK 3 1 B 1 B 490 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 4017 ; 0.21 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 4017 ; 1.41 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118512 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17900 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QWL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG MME 550, 0.1 M SODIUM CITRATE, REMARK 280 10 MM ZNSO4, 3 MM NAN3, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.37800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.48050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.37800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 77.48050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 62380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -266.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.75600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 154.96100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 491 REMARK 465 ASP A 492 REMARK 465 MET A 493 REMARK 465 HIS A 494 REMARK 465 GLY A 495 REMARK 465 LYS A 496 REMARK 465 ASP A 497 REMARK 465 MET A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 THR A 501 REMARK 465 LYS A 502 REMARK 465 LYS A 503 REMARK 465 LYS A 504 REMARK 465 LYS A 505 REMARK 465 LYS B 491 REMARK 465 ASP B 492 REMARK 465 MET B 493 REMARK 465 HIS B 494 REMARK 465 GLY B 495 REMARK 465 LYS B 496 REMARK 465 ASP B 497 REMARK 465 MET B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 THR B 501 REMARK 465 LYS B 502 REMARK 465 LYS B 503 REMARK 465 LYS B 504 REMARK 465 LYS B 505 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 FMT A 1714 O HOH A 2694 1.83 REMARK 500 O HOH A 2935 O HOH A 3018 1.84 REMARK 500 O HOH A 2812 O HOH A 3011 2.09 REMARK 500 OE1 GLU A 89 O HOH A 2763 2.10 REMARK 500 O ARG B 101 O2 FMT B 1720 2.13 REMARK 500 O HOH B 2022 O HOH B 2201 2.17 REMARK 500 OH TYR A 371 O2 FMT A 1730 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 154 O HOH A 2849 2665 1.45 REMARK 500 O HOH A 2930 O HOH B 2217 1554 1.91 REMARK 500 O2 FMT B 1721 O HOH B 2177 2665 1.94 REMARK 500 O HOH B 2009 O HOH B 2128 2665 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 32 CA - CB - CG ANGL. DEV. = -16.2 DEGREES REMARK 500 ASP A 109 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 446 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 18 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 109 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 125 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 184 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 279 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 399 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 35 76.05 -69.69 REMARK 500 LYS A 150 -137.40 -104.78 REMARK 500 SER A 198 -63.32 68.86 REMARK 500 ASN A 300 10.19 -140.61 REMARK 500 PRO A 328 27.41 -78.48 REMARK 500 ASP A 369 -146.27 72.60 REMARK 500 LYS B 150 -143.13 -99.03 REMARK 500 SER B 198 -65.62 73.91 REMARK 500 ASN B 300 11.44 -144.17 REMARK 500 PRO B 328 25.71 -79.89 REMARK 500 ASP B 369 -147.21 74.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 550 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 339 OH REMARK 620 2 HEM A 550 NA 98.4 REMARK 620 3 HEM A 550 NB 96.4 90.5 REMARK 620 4 HEM A 550 NC 88.9 172.5 87.5 REMARK 620 5 HEM A 550 ND 91.0 89.6 172.5 91.4 REMARK 620 6 FMT A1701 O2 162.7 96.9 91.4 75.9 81.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 550 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 339 OH REMARK 620 2 HEM B 550 NA 99.2 REMARK 620 3 HEM B 550 NB 97.2 91.3 REMARK 620 4 HEM B 550 NC 89.6 171.2 86.6 REMARK 620 5 HEM B 550 ND 92.3 89.1 170.3 91.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 2600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1706 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1707 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1708 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1711 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1712 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1713 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1714 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1715 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1716 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1717 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1718 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1719 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1720 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1721 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1722 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1723 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1724 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1725 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1726 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1727 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1728 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1729 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1730 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1731 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1732 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1733 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1734 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1735 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1736 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QWL RELATED DB: PDB REMARK 900 STRUCTURE OF HELICOBACTER PYLORI CATALASE DBREF 1QWM A 1 505 UNP P77872 CATA_HELPY 1 505 DBREF 1QWM B 1 505 UNP P77872 CATA_HELPY 1 505 SEQRES 1 A 505 MET VAL ASN LYS ASP VAL LYS GLN THR THR ALA PHE GLY SEQRES 2 A 505 ALA PRO VAL TRP ASP ASP ASN ASN VAL ILE THR ALA GLY SEQRES 3 A 505 PRO ARG GLY PRO VAL LEU LEU GLN SER THR TRP PHE LEU SEQRES 4 A 505 GLU LYS LEU ALA ALA PHE ASP ARG GLU ARG ILE PRO GLU SEQRES 5 A 505 ARG VAL VAL HIS ALA LYS GLY SER GLY ALA TYR GLY THR SEQRES 6 A 505 PHE THR VAL THR LYS ASP ILE THR LYS TYR THR LYS ALA SEQRES 7 A 505 LYS ILE PHE SER LYS VAL GLY LYS LYS THR GLU CYS PHE SEQRES 8 A 505 PHE ARG PHE SER THR VAL ALA GLY GLU ARG GLY SER ALA SEQRES 9 A 505 ASP ALA VAL ARG ASP PRO ARG GLY PHE ALA MET LYS TYR SEQRES 10 A 505 TYR THR GLU GLU GLY ASN TRP ASP LEU VAL GLY ASN ASN SEQRES 11 A 505 THR PRO VAL PHE PHE ILE ARG ASP ALA ILE LYS PHE PRO SEQRES 12 A 505 ASP PHE ILE HIS THR GLN LYS ARG ASP PRO GLN THR ASN SEQRES 13 A 505 LEU PRO ASN HIS ASP MET VAL TRP ASP PHE TRP SER ASN SEQRES 14 A 505 VAL PRO GLU SER LEU TYR GLN VAL THR TRP VAL MET SER SEQRES 15 A 505 ASP ARG GLY ILE PRO LYS SER PHE ARG HIS MET ASP GLY SEQRES 16 A 505 PHE GLY SER HIS THR PHE SER LEU ILE ASN ALA LYS GLY SEQRES 17 A 505 GLU ARG PHE TRP VAL LYS PHE HIS PHE HIS THR MET GLN SEQRES 18 A 505 GLY VAL LYS HIS LEU THR ASN GLU GLU ALA ALA GLU ILE SEQRES 19 A 505 ARG LYS HIS ASP PRO ASP SER ASN GLN ARG ASP LEU PHE SEQRES 20 A 505 ASP ALA ILE ALA ARG GLY ASP TYR PRO LYS TRP LYS LEU SEQRES 21 A 505 SER ILE GLN VAL MET PRO GLU GLU ASP ALA LYS LYS TYR SEQRES 22 A 505 ARG PHE HIS PRO PHE ASP VAL THR LYS ILE TRP TYR THR SEQRES 23 A 505 GLN ASP TYR PRO LEU MET GLU VAL GLY ILE VAL GLU LEU SEQRES 24 A 505 ASN LYS ASN PRO GLU ASN TYR PHE ALA GLU VAL GLU GLN SEQRES 25 A 505 ALA ALA PHE THR PRO ALA ASN VAL VAL PRO GLY ILE GLY SEQRES 26 A 505 TYR SER PRO ASP ARG MET LEU GLN GLY ARG LEU PHE SER SEQRES 27 A 505 TYR GLY ASP THR HIS ARG TYR ARG LEU GLY VAL ASN TYR SEQRES 28 A 505 PRO GLN ILE PRO VAL ASN LYS PRO ARG CYS PRO PHE HIS SEQRES 29 A 505 SER SER SER ARG ASP GLY TYR MET GLN ASN GLY TYR TYR SEQRES 30 A 505 GLY SER LEU GLN ASN TYR THR PRO SER SER LEU PRO GLY SEQRES 31 A 505 TYR LYS GLU ASP LYS SER ALA ARG ASP PRO LYS PHE ASN SEQRES 32 A 505 LEU ALA HIS ILE GLU LYS GLU PHE GLU VAL TRP ASN TRP SEQRES 33 A 505 ASP TYR ARG ALA ASP ASP SER ASP TYR TYR THR GLN PRO SEQRES 34 A 505 GLY ASP TYR TYR ARG SER LEU PRO ALA ASP GLU LYS GLU SEQRES 35 A 505 ARG LEU HIS ASP THR ILE GLY GLU SER LEU ALA HIS VAL SEQRES 36 A 505 THR HIS LYS GLU ILE VAL ASP LYS GLN LEU GLU HIS PHE SEQRES 37 A 505 LYS LYS ALA ASP PRO LYS TYR ALA GLU GLY VAL LYS LYS SEQRES 38 A 505 ALA LEU GLU LYS HIS GLN LYS MET MET LYS ASP MET HIS SEQRES 39 A 505 GLY LYS ASP MET HIS HIS THR LYS LYS LYS LYS SEQRES 1 B 505 MET VAL ASN LYS ASP VAL LYS GLN THR THR ALA PHE GLY SEQRES 2 B 505 ALA PRO VAL TRP ASP ASP ASN ASN VAL ILE THR ALA GLY SEQRES 3 B 505 PRO ARG GLY PRO VAL LEU LEU GLN SER THR TRP PHE LEU SEQRES 4 B 505 GLU LYS LEU ALA ALA PHE ASP ARG GLU ARG ILE PRO GLU SEQRES 5 B 505 ARG VAL VAL HIS ALA LYS GLY SER GLY ALA TYR GLY THR SEQRES 6 B 505 PHE THR VAL THR LYS ASP ILE THR LYS TYR THR LYS ALA SEQRES 7 B 505 LYS ILE PHE SER LYS VAL GLY LYS LYS THR GLU CYS PHE SEQRES 8 B 505 PHE ARG PHE SER THR VAL ALA GLY GLU ARG GLY SER ALA SEQRES 9 B 505 ASP ALA VAL ARG ASP PRO ARG GLY PHE ALA MET LYS TYR SEQRES 10 B 505 TYR THR GLU GLU GLY ASN TRP ASP LEU VAL GLY ASN ASN SEQRES 11 B 505 THR PRO VAL PHE PHE ILE ARG ASP ALA ILE LYS PHE PRO SEQRES 12 B 505 ASP PHE ILE HIS THR GLN LYS ARG ASP PRO GLN THR ASN SEQRES 13 B 505 LEU PRO ASN HIS ASP MET VAL TRP ASP PHE TRP SER ASN SEQRES 14 B 505 VAL PRO GLU SER LEU TYR GLN VAL THR TRP VAL MET SER SEQRES 15 B 505 ASP ARG GLY ILE PRO LYS SER PHE ARG HIS MET ASP GLY SEQRES 16 B 505 PHE GLY SER HIS THR PHE SER LEU ILE ASN ALA LYS GLY SEQRES 17 B 505 GLU ARG PHE TRP VAL LYS PHE HIS PHE HIS THR MET GLN SEQRES 18 B 505 GLY VAL LYS HIS LEU THR ASN GLU GLU ALA ALA GLU ILE SEQRES 19 B 505 ARG LYS HIS ASP PRO ASP SER ASN GLN ARG ASP LEU PHE SEQRES 20 B 505 ASP ALA ILE ALA ARG GLY ASP TYR PRO LYS TRP LYS LEU SEQRES 21 B 505 SER ILE GLN VAL MET PRO GLU GLU ASP ALA LYS LYS TYR SEQRES 22 B 505 ARG PHE HIS PRO PHE ASP VAL THR LYS ILE TRP TYR THR SEQRES 23 B 505 GLN ASP TYR PRO LEU MET GLU VAL GLY ILE VAL GLU LEU SEQRES 24 B 505 ASN LYS ASN PRO GLU ASN TYR PHE ALA GLU VAL GLU GLN SEQRES 25 B 505 ALA ALA PHE THR PRO ALA ASN VAL VAL PRO GLY ILE GLY SEQRES 26 B 505 TYR SER PRO ASP ARG MET LEU GLN GLY ARG LEU PHE SER SEQRES 27 B 505 TYR GLY ASP THR HIS ARG TYR ARG LEU GLY VAL ASN TYR SEQRES 28 B 505 PRO GLN ILE PRO VAL ASN LYS PRO ARG CYS PRO PHE HIS SEQRES 29 B 505 SER SER SER ARG ASP GLY TYR MET GLN ASN GLY TYR TYR SEQRES 30 B 505 GLY SER LEU GLN ASN TYR THR PRO SER SER LEU PRO GLY SEQRES 31 B 505 TYR LYS GLU ASP LYS SER ALA ARG ASP PRO LYS PHE ASN SEQRES 32 B 505 LEU ALA HIS ILE GLU LYS GLU PHE GLU VAL TRP ASN TRP SEQRES 33 B 505 ASP TYR ARG ALA ASP ASP SER ASP TYR TYR THR GLN PRO SEQRES 34 B 505 GLY ASP TYR TYR ARG SER LEU PRO ALA ASP GLU LYS GLU SEQRES 35 B 505 ARG LEU HIS ASP THR ILE GLY GLU SER LEU ALA HIS VAL SEQRES 36 B 505 THR HIS LYS GLU ILE VAL ASP LYS GLN LEU GLU HIS PHE SEQRES 37 B 505 LYS LYS ALA ASP PRO LYS TYR ALA GLU GLY VAL LYS LYS SEQRES 38 B 505 ALA LEU GLU LYS HIS GLN LYS MET MET LYS ASP MET HIS SEQRES 39 B 505 GLY LYS ASP MET HIS HIS THR LYS LYS LYS LYS HET AZI A2600 3 HET HEM A 550 43 HET FMT A1701 3 HET FMT A1704 3 HET FMT A1706 3 HET FMT A1709 3 HET FMT A1710 3 HET FMT A1711 3 HET FMT A1713 3 HET FMT A1714 3 HET FMT A1715 3 HET FMT A1716 3 HET FMT A1718 3 HET FMT A1719 3 HET FMT A1722 3 HET FMT A1723 3 HET FMT A1724 3 HET FMT A1725 3 HET FMT A1730 3 HET FMT A1732 3 HET FMT A1733 3 HET FMT A1734 3 HET FMT A1735 3 HET HEM B 550 43 HET FMT B1702 3 HET FMT B1703 3 HET FMT B1705 3 HET FMT B1707 3 HET FMT B1708 3 HET FMT B1712 3 HET FMT B1717 3 HET FMT B1720 3 HET FMT B1721 3 HET FMT B1726 3 HET FMT B1727 3 HET FMT B1728 3 HET FMT B1729 3 HET FMT B1731 3 HET FMT B1736 3 HETNAM AZI AZIDE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM FMT FORMIC ACID HETSYN HEM HEME FORMUL 3 AZI N3 1- FORMUL 4 HEM 2(C34 H32 FE N4 O4) FORMUL 5 FMT 36(C H2 O2) FORMUL 42 HOH *933(H2 O) HELIX 1 1 SER A 35 ASP A 46 1 12 HELIX 2 2 ALA A 78 SER A 82 5 5 HELIX 3 3 ASP A 138 ILE A 140 5 3 HELIX 4 4 LYS A 141 LYS A 150 1 10 HELIX 5 5 ASN A 159 VAL A 170 1 12 HELIX 6 6 SER A 173 SER A 182 1 10 HELIX 7 7 ASP A 183 ILE A 186 5 4 HELIX 8 8 SER A 189 MET A 193 5 5 HELIX 9 9 THR A 227 ASP A 238 1 12 HELIX 10 10 ASP A 240 ARG A 252 1 13 HELIX 11 11 GLU A 268 ALA A 270 5 3 HELIX 12 12 ASN A 305 VAL A 310 1 6 HELIX 13 13 ASP A 329 GLY A 348 1 20 HELIX 14 14 ASN A 350 LYS A 358 5 9 HELIX 15 15 ASP A 394 ARG A 398 5 5 HELIX 16 16 ASN A 403 ILE A 407 5 5 HELIX 17 17 ASP A 417 ASP A 422 1 6 HELIX 18 18 TYR A 426 LEU A 436 1 11 HELIX 19 19 PRO A 437 ALA A 453 1 17 HELIX 20 20 HIS A 457 ASP A 472 1 16 HELIX 21 21 ASP A 472 MET A 490 1 19 HELIX 22 22 SER B 35 ASP B 46 1 12 HELIX 23 23 ALA B 78 SER B 82 5 5 HELIX 24 24 ASP B 138 ILE B 140 5 3 HELIX 25 25 LYS B 141 LYS B 150 1 10 HELIX 26 26 ASN B 159 VAL B 170 1 12 HELIX 27 27 SER B 173 SER B 182 1 10 HELIX 28 28 ASP B 183 ILE B 186 5 4 HELIX 29 29 SER B 189 MET B 193 5 5 HELIX 30 30 THR B 227 ASP B 238 1 12 HELIX 31 31 ASP B 240 ARG B 252 1 13 HELIX 32 32 GLU B 268 ALA B 270 5 3 HELIX 33 33 ASN B 305 VAL B 310 1 6 HELIX 34 34 ASP B 329 GLY B 348 1 20 HELIX 35 35 ASN B 350 LYS B 358 5 9 HELIX 36 36 ASP B 394 ARG B 398 5 5 HELIX 37 37 ASN B 403 ILE B 407 5 5 HELIX 38 38 ASP B 417 ASP B 422 1 6 HELIX 39 39 TYR B 426 LEU B 436 1 11 HELIX 40 40 PRO B 437 ALA B 453 1 17 HELIX 41 41 HIS B 457 ASP B 472 1 16 HELIX 42 42 ASP B 472 MET B 490 1 19 SHEET 1 A11 ILE A 324 GLY A 325 0 SHEET 2 A11 PHE A 201 ILE A 204 -1 N SER A 202 O GLY A 325 SHEET 3 A11 ARG A 210 THR A 219 -1 O PHE A 211 N LEU A 203 SHEET 4 A11 LYS A 257 PRO A 266 -1 O MET A 265 N TRP A 212 SHEET 5 A11 MET A 292 LYS A 301 -1 O VAL A 294 N LEU A 260 SHEET 6 A11 GLY A 59 VAL A 68 -1 N THR A 67 O ILE A 296 SHEET 7 A11 LYS A 87 SER A 95 -1 O PHE A 92 N ALA A 62 SHEET 8 A11 GLY A 112 THR A 119 -1 O ALA A 114 N ARG A 93 SHEET 9 A11 GLY A 122 ASN A 129 -1 O GLY A 128 N PHE A 113 SHEET 10 A11 GLY A 195 PHE A 196 -1 O PHE A 196 N ASN A 129 SHEET 11 A11 ARG A 210 THR A 219 -1 O PHE A 217 N GLY A 195 SHEET 1 B11 ILE B 324 GLY B 325 0 SHEET 2 B11 PHE B 201 ILE B 204 -1 N SER B 202 O GLY B 325 SHEET 3 B11 ARG B 210 THR B 219 -1 O PHE B 211 N LEU B 203 SHEET 4 B11 LYS B 257 PRO B 266 -1 O MET B 265 N TRP B 212 SHEET 5 B11 MET B 292 LYS B 301 -1 O VAL B 294 N LEU B 260 SHEET 6 B11 GLY B 59 VAL B 68 -1 N TYR B 63 O LYS B 301 SHEET 7 B11 LYS B 87 SER B 95 -1 O PHE B 94 N SER B 60 SHEET 8 B11 GLY B 112 THR B 119 -1 O ALA B 114 N ARG B 93 SHEET 9 B11 GLY B 122 ASN B 129 -1 O TRP B 124 N TYR B 117 SHEET 10 B11 GLY B 195 PHE B 196 -1 O PHE B 196 N ASN B 129 SHEET 11 B11 ARG B 210 THR B 219 -1 O PHE B 217 N GLY B 195 LINK O BARG A 101 O2 FMT A1710 1555 1555 1.96 LINK O1 FMT A1735 N1 AZI A2600 1555 1555 1.73 LINK OH TYR A 339 FE HEM A 550 1555 1555 1.87 LINK FE HEM A 550 O2 FMT A1701 1555 1555 2.64 LINK OH TYR B 339 FE HEM B 550 1555 1555 1.93 CISPEP 1 THR A 384 PRO A 385 0 -8.72 CISPEP 2 THR B 384 PRO B 385 0 -3.10 SITE 1 AC1 6 ARG A 47 ARG A 344 FMT A1713 FMT A1735 SITE 2 AC1 6 ARG B 47 TYR B 345 SITE 1 AC2 27 ASP A 46 ARG A 53 VAL A 54 VAL A 55 SITE 2 AC2 27 HIS A 56 ARG A 93 GLY A 112 VAL A 127 SITE 3 AC2 27 GLY A 128 ASN A 129 ALA A 139 PHE A 142 SITE 4 AC2 27 GLY A 197 SER A 198 HIS A 199 PHE A 315 SITE 5 AC2 27 MET A 331 ARG A 335 SER A 338 TYR A 339 SITE 6 AC2 27 THR A 342 HIS A 343 ARG A 346 FMT A1701 SITE 7 AC2 27 HOH A2606 HOH A2629 HOH A2668 SITE 1 AC3 28 ASP B 46 ARG B 53 VAL B 54 VAL B 55 SITE 2 AC3 28 HIS B 56 ARG B 93 GLY B 112 PHE B 113 SITE 3 AC3 28 ALA B 114 VAL B 127 GLY B 128 ASN B 129 SITE 4 AC3 28 ALA B 139 PHE B 142 GLY B 197 SER B 198 SITE 5 AC3 28 PHE B 315 MET B 331 ARG B 335 SER B 338 SITE 6 AC3 28 TYR B 339 THR B 342 HIS B 343 ARG B 346 SITE 7 AC3 28 FMT B1702 HOH B1739 HOH B1745 HOH B1792 SITE 1 AC4 5 HIS A 56 ASN A 129 PHE A 134 PHE A 142 SITE 2 AC4 5 HEM A 550 SITE 1 AC5 5 HIS B 56 VAL B 97 ASN B 129 PHE B 134 SITE 2 AC5 5 HEM B 550 SITE 1 AC6 6 ARG B 108 ASP B 109 PRO B 110 PHE B 135 SITE 2 AC6 6 GLN B 149 VAL B 180 SITE 1 AC7 5 GLN A 149 VAL A 163 TRP A 167 MET A 181 SITE 2 AC7 5 HOH A3041 SITE 1 AC8 7 GLN B 149 PRO B 158 VAL B 163 FMT B1707 SITE 2 AC8 7 HOH B1827 HOH B2015 HOH B2224 SITE 1 AC9 4 PRO A 158 HIS A 160 HOH A2784 HOH A2855 SITE 1 BC1 3 FMT B1705 HOH B1977 HOH B2112 SITE 1 BC2 6 HIS B 160 GLU B 450 SER B 451 HIS B 454 SITE 2 BC2 6 HOH B1817 HOH B1986 SITE 1 BC3 6 ASP A 183 ARG A 184 VAL A 223 GLU A 440 SITE 2 BC3 6 HOH A2717 HOH A2732 SITE 1 BC4 8 LYS A 58 ARG A 101 GLY A 102 ARG A 151 SITE 2 BC4 8 ASN A 156 FMT A1734 HOH A2845 HOH A2890 SITE 1 BC5 5 LYS A 150 ARG A 151 HOH A2607 HOH A2652 SITE 2 BC5 5 HOH A3040 SITE 1 BC6 8 ALA B 57 LYS B 58 GLY B 59 ARG B 101 SITE 2 BC6 8 TYR B 306 GLU B 311 FMT B1720 HOH B2207 SITE 1 BC7 5 ARG A 47 TYR A 345 AZI A2600 HOH A2654 SITE 2 BC7 5 ARG B 344 SITE 1 BC8 5 ASN A 130 TRP A 179 ARG A 184 ASP A 194 SITE 2 BC8 5 HOH A2694 SITE 1 BC9 2 TYR A 371 TYR B 371 SITE 1 CC1 7 PRO A 352 GLN A 353 PRO A 359 PHE A 363 SITE 2 CC1 7 HOH A2791 HOH A2860 ALA B 11 SITE 1 CC2 3 TYR B 285 THR B 286 HOH B2133 SITE 1 CC3 4 PHE A 247 ALA A 251 ASN A 302 HOH A2725 SITE 1 CC4 5 LYS A 77 GLY A 323 SER A 396 ALA A 397 SITE 2 CC4 5 ARG A 398 SITE 1 CC5 8 LYS B 58 ARG B 101 GLY B 102 ARG B 151 SITE 2 CC5 8 ASN B 156 FMT B1712 HOH B2050 HOH B2207 SITE 1 CC6 8 HOH A2634 ARG B 49 ARG B 101 HOH B1801 SITE 2 CC6 8 HOH B1916 HOH B2050 HOH B2085 HOH B2177 SITE 1 CC7 4 ASP A 194 HIS A 218 THR A 219 HOH A2928 SITE 1 CC8 4 VAL A 223 LYS A 224 HOH A2688 HOH A2978 SITE 1 CC9 3 LYS A 188 HOH A2688 HOH A2925 SITE 1 DC1 4 LYS A 188 LEU A 226 HOH A2925 HOH A2956 SITE 1 DC2 3 VAL B 223 LYS B 224 HOH B1830 SITE 1 DC3 3 ASP B 183 HIS B 225 GLU B 440 SITE 1 DC4 4 LYS B 188 LYS B 224 HOH B1830 HOH B2143 SITE 1 DC5 9 SER B 182 ASP B 183 ARG B 184 TYR B 432 SITE 2 DC5 9 LEU B 436 GLU B 440 HOH B1897 HOH B2000 SITE 3 DC5 9 HOH B2225 SITE 1 DC6 4 TYR A 371 FMT A1735 PRO B 51 TYR B 345 SITE 1 DC7 5 LEU B 336 PHE B 337 ASP B 341 ARG B 344 SITE 2 DC7 5 FMT B1736 SITE 1 DC8 4 LEU A 336 PHE A 337 ARG A 344 FMT A1733 SITE 1 DC9 9 ALA A 318 ARG A 344 FMT A1732 HOH A2787 SITE 2 DC9 9 THR B 36 LEU B 39 GLU B 40 HOH B1800 SITE 3 DC9 9 HOH B2160 SITE 1 EC1 8 ALA A 57 LYS A 58 GLY A 59 ARG A 101 SITE 2 EC1 8 TYR A 306 GLU A 311 FMT A1710 HOH A2845 SITE 1 EC2 7 ARG A 344 FMT A1730 AZI A2600 HOH A2727 SITE 2 EC2 7 HOH A2867 ARG B 47 TYR B 345 SITE 1 EC3 9 THR A 36 LEU A 39 GLU A 40 ALA B 318 SITE 2 EC3 9 ARG B 344 FMT B1731 HOH B1917 HOH B2011 SITE 3 EC3 9 HOH B2179 CRYST1 64.756 154.961 96.163 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010399 0.00000