PDB Short entry for 1QX0 HEADER TRANSFERASE/DNA 04-SEP-03 1QX0 TITLE CONJUGATIVE RELAXASE TRWC IN COMPLEX WITH ORIT DNA. METAL-BOUND TITLE 2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA OLIGONUCLEOTIDE; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DNA FORMING A CRUCIFORM ARM; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRWC PROTEIN; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 5 ORGANISM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, BACTERIAL CONJUGATION, RELAXASE, DNA KEYWDS 2 REPLICATION, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.GUASCH,M.LUCAS,G.MONCALIAN,M.CABEZAS,R.PREZ-LUQUE,F.X.GOMIS-RTH, AUTHOR 2 F.DE LA CRUZ,M.COLL REVDAT 5 15-NOV-23 1QX0 1 REMARK REVDAT 4 16-AUG-23 1QX0 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1QX0 1 VERSN REVDAT 2 09-DEC-03 1QX0 1 JRNL REVDAT 1 25-NOV-03 1QX0 0 JRNL AUTH A.GUASCH,M.LUCAS,G.MONCALIAN,M.CABEZAS,R.PREZ-LUQUE, JRNL AUTH 2 F.X.GOMIS-RTH,F.DE LA CRUZ,M.COLL JRNL TITL RECOGNITION AND PROCESSING OF THE ORIGIN OF TRANSFER DNA BY JRNL TITL 2 CONJUGATIVE RELAXASE TRWC JRNL REF NAT.STRUCT.BIOL. V. 10 1002 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 14625590 JRNL DOI 10.1038/NSB1017 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 21836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1463 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2288 REMARK 3 NUCLEIC ACID ATOMS : 512 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.302 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.974 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2899 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4006 ; 1.497 ; 2.179 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 6.377 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 409 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2037 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1219 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1426 ; 0.814 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2257 ; 1.517 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1473 ; 2.096 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1749 ; 3.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 27 REMARK 3 RESIDUE RANGE : A 32 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9651 12.5808 51.5715 REMARK 3 T TENSOR REMARK 3 T11: 0.0141 T22: 0.1085 REMARK 3 T33: 0.0587 T12: 0.0326 REMARK 3 T13: 0.0133 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.0420 L22: 0.3153 REMARK 3 L33: 0.4459 L12: 0.1161 REMARK 3 L13: 0.3886 L23: -0.1381 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: -0.1813 S13: -0.0475 REMARK 3 S21: -0.0428 S22: -0.0319 S23: 0.0784 REMARK 3 S31: 0.0439 S32: 0.0210 S33: 0.0199 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 25 REMARK 3 ORIGIN FOR THE GROUP (A): 39.4905 25.4106 62.5911 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.1922 REMARK 3 T33: 0.0709 T12: 0.0110 REMARK 3 T13: 0.0014 T23: -0.0853 REMARK 3 L TENSOR REMARK 3 L11: 0.6734 L22: 0.4927 REMARK 3 L33: 2.2841 L12: 0.5800 REMARK 3 L13: 0.5977 L23: 1.3369 REMARK 3 S TENSOR REMARK 3 S11: -0.0873 S12: -0.2461 S13: 0.2738 REMARK 3 S21: -0.0451 S22: -0.0519 S23: 0.1912 REMARK 3 S31: -0.0064 S32: -0.0354 S33: 0.1393 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 294 B 182 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7154 17.0000 47.4673 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.1044 REMARK 3 T33: 0.1036 T12: 0.0008 REMARK 3 T13: 0.0007 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.4589 L22: 0.8916 REMARK 3 L33: 2.1067 L12: 0.4771 REMARK 3 L13: 1.6700 L23: 2.2068 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: -0.1674 S13: 0.1911 REMARK 3 S21: -0.1090 S22: -0.1624 S23: 0.0840 REMARK 3 S31: -0.4634 S32: -0.2975 S33: 0.2506 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 B 224 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7063 15.4995 51.2285 REMARK 3 T TENSOR REMARK 3 T11: 0.0488 T22: 0.0964 REMARK 3 T33: 0.0726 T12: 0.0289 REMARK 3 T13: 0.0007 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.4697 L22: 0.2084 REMARK 3 L33: 0.3233 L12: 0.1473 REMARK 3 L13: 0.1146 L23: 0.0916 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.1118 S13: 0.0139 REMARK 3 S21: -0.0507 S22: -0.0220 S23: -0.0031 REMARK 3 S31: 0.0416 S32: -0.0146 S33: 0.0004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9839 REMARK 200 MONOCHROMATOR : DIAMON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24256 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1OMH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.34467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.68933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.51700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 170.86167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.17233 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.34467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 136.68933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 170.86167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 102.51700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.17233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 28 REMARK 465 LYS A 29 REMARK 465 ASP A 30 REMARK 465 GLY A 31 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DT B 25 N1 C2 O2 N3 C4 O4 C5 REMARK 480 DT B 25 C7 C6 REMARK 480 TYR A 26 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR A 26 OH REMARK 480 TYR A 27 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR A 27 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DT B 25 O HOH B 221 1.98 REMARK 500 O2 DT B 25 O HOH B 223 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 14 O3' DT B 14 C3' -0.037 REMARK 500 DC B 24 O3' DC B 24 C3' -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 1 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC B 2 O4' - C1' - N1 ANGL. DEV. = -5.6 DEGREES REMARK 500 DC B 6 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA B 11 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG B 12 O5' - C5' - C4' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG B 15 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG B 17 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT B 18 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA B 19 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT B 21 O4' - C1' - N1 ANGL. DEV. = 8.1 DEGREES REMARK 500 DT B 23 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC B 24 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT B 25 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DT B 25 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 249 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 291 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 18 3.97 -67.40 REMARK 500 TYR A 26 -4.28 90.09 REMARK 500 GLU A 65 -81.72 -68.09 REMARK 500 ARG A 71 21.97 81.08 REMARK 500 GLN A 159 82.85 -158.32 REMARK 500 LYS A 215 -59.08 -14.97 REMARK 500 SER A 233 70.93 -117.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 294 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 183 O REMARK 620 2 HIS A 150 ND1 153.4 REMARK 620 3 HIS A 161 NE2 85.9 112.3 REMARK 620 4 HIS A 163 NE2 90.7 101.8 106.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 182 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OMH RELATED DB: PDB REMARK 900 RELATED ID: 1OSB RELATED DB: PDB DBREF 1QX0 A 1 293 UNP Q47673 Q47673_ECOLI 1 293 DBREF 1QX0 B 1 25 PDB 1QX0 1QX0 1 25 SEQADV 1QX0 MSE A 1 UNP Q47673 MET 1 MODIFIED RESIDUE SEQADV 1QX0 MSE A 5 UNP Q47673 MET 5 MODIFIED RESIDUE SEQADV 1QX0 MSE A 70 UNP Q47673 MET 70 MODIFIED RESIDUE SEQADV 1QX0 MSE A 169 UNP Q47673 MET 169 MODIFIED RESIDUE SEQRES 1 B 25 DG DC DG DC DA DC DC DG DA DA DA DG DG SEQRES 2 B 25 DT DG DC DG DT DA DT DT DG DT DC DT SEQRES 1 A 293 MSE LEU SER HIS MSE VAL LEU THR ARG GLN ASP ILE GLY SEQRES 2 A 293 ARG ALA ALA SER TYR TYR GLU ASP GLY ALA ASP ASP TYR SEQRES 3 A 293 TYR ALA LYS ASP GLY ASP ALA SER GLU TRP GLN GLY LYS SEQRES 4 A 293 GLY ALA GLU GLU LEU GLY LEU SER GLY GLU VAL ASP SER SEQRES 5 A 293 LYS ARG PHE ARG GLU LEU LEU ALA GLY ASN ILE GLY GLU SEQRES 6 A 293 GLY HIS ARG ILE MSE ARG SER ALA THR ARG GLN ASP SER SEQRES 7 A 293 LYS GLU ARG ILE GLY LEU ASP LEU THR PHE SER ALA PRO SEQRES 8 A 293 LYS SER VAL SER LEU GLN ALA LEU VAL ALA GLY ASP ALA SEQRES 9 A 293 GLU ILE ILE LYS ALA HIS ASP ARG ALA VAL ALA ARG THR SEQRES 10 A 293 LEU GLU GLN ALA GLU ALA ARG ALA GLN ALA ARG GLN LYS SEQRES 11 A 293 ILE GLN GLY LYS THR ARG ILE GLU THR THR GLY ASN LEU SEQRES 12 A 293 VAL ILE GLY LYS PHE ARG HIS GLU THR SER ARG GLU ARG SEQRES 13 A 293 ASP PRO GLN LEU HIS THR HIS ALA VAL ILE LEU ASN MSE SEQRES 14 A 293 THR LYS ARG SER ASP GLY GLN TRP ARG ALA LEU LYS ASN SEQRES 15 A 293 ASP GLU ILE VAL LYS ALA THR ARG TYR LEU GLY ALA VAL SEQRES 16 A 293 TYR ASN ALA GLU LEU ALA HIS GLU LEU GLN LYS LEU GLY SEQRES 17 A 293 TYR GLN LEU ARG TYR GLY LYS ASP GLY ASN PHE ASP LEU SEQRES 18 A 293 ALA HIS ILE ASP ARG GLN GLN ILE GLU GLY PHE SER LYS SEQRES 19 A 293 ARG THR GLU GLN ILE ALA GLU TRP TYR ALA ALA ARG GLY SEQRES 20 A 293 LEU ASP PRO ASN SER VAL SER LEU GLU GLN LYS GLN ALA SEQRES 21 A 293 ALA LYS VAL LEU SER ARG ALA LYS LYS THR SER VAL ASP SEQRES 22 A 293 ARG GLU ALA LEU ARG ALA GLU TRP GLN ALA THR ALA LYS SEQRES 23 A 293 GLU LEU GLY ILE ASP PHE SER MODRES 1QX0 MSE A 1 MET SELENOMETHIONINE MODRES 1QX0 MSE A 5 MET SELENOMETHIONINE MODRES 1QX0 MSE A 70 MET SELENOMETHIONINE MODRES 1QX0 MSE A 169 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 5 8 HET MSE A 70 8 HET MSE A 169 8 HET SO4 B 182 5 HET ZN A 294 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 2 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 O4 S 2- FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *178(H2 O) HELIX 1 1 ASP A 11 SER A 17 1 7 HELIX 2 2 GLY A 38 LEU A 44 1 7 HELIX 3 3 ASP A 51 ALA A 60 1 10 HELIX 4 4 PRO A 91 VAL A 100 1 10 HELIX 5 5 ASP A 103 ALA A 123 1 21 HELIX 6 6 ASN A 182 LYS A 187 1 6 HELIX 7 8 ASP A 225 PHE A 232 1 8 HELIX 8 9 SER A 233 ARG A 246 1 14 HELIX 9 10 SER A 254 SER A 265 1 12 HELIX 10 11 ASP A 273 LEU A 288 1 16 SHEET 1 A 5 LEU A 2 THR A 8 0 SHEET 2 A 5 ARG A 81 SER A 89 -1 O GLY A 83 N LEU A 7 SHEET 3 A 5 PRO A 158 LEU A 167 -1 O ILE A 166 N LEU A 84 SHEET 4 A 5 ILE A 145 THR A 152 -1 N HIS A 150 O HIS A 161 SHEET 5 A 5 SER A 34 GLN A 37 -1 N GLU A 35 O LYS A 147 SHEET 1 B 2 GLN A 126 ILE A 131 0 SHEET 2 B 2 LYS A 134 THR A 139 -1 O GLU A 138 N ALA A 127 SHEET 1 C 2 THR A 170 LYS A 171 0 SHEET 2 C 2 TRP A 177 ARG A 178 -1 O ARG A 178 N THR A 170 SHEET 1 D 2 LEU A 211 TYR A 213 0 SHEET 2 D 2 PHE A 219 LEU A 221 -1 O ASP A 220 N ARG A 212 LINK C MSE A 1 N LEU A 2 1555 1555 1.32 LINK C HIS A 4 N MSE A 5 1555 1555 1.32 LINK C MSE A 5 N VAL A 6 1555 1555 1.32 LINK C ILE A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N ARG A 71 1555 1555 1.33 LINK C ASN A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N THR A 170 1555 1555 1.33 LINK O HOH B 183 ZN ZN A 294 1555 1555 2.49 LINK ND1 HIS A 150 ZN ZN A 294 1555 1555 2.08 LINK NE2 HIS A 161 ZN ZN A 294 1555 1555 2.16 LINK NE2 HIS A 163 ZN ZN A 294 1555 1555 2.28 SITE 1 AC1 6 HIS A 150 HIS A 161 HIS A 163 HOH A 429 SITE 2 AC1 6 HOH B 183 HOH B 223 SITE 1 AC2 8 SER A 3 SER A 89 HOH A 305 DG B 22 SITE 2 AC2 8 DT B 25 HOH B 184 HOH B 219 HOH B 220 CRYST1 91.185 91.185 205.034 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010967 0.006332 0.000000 0.00000 SCALE2 0.000000 0.012663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004877 0.00000