PDB Short entry for 1QY4 HEADER ISOMERASE 09-SEP-03 1QY4 TITLE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE FROM PYROCOCCUS FURIOSUS TITLE 2 IN COMPLEX WITH GLUCONATE 6-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, COMPND 5 PHI; COMPND 6 EC: 5.3.1.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: PGIA OR PF0196; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS PHOSPHOGLUCOSE ISOMERASE, CUPIN FOLD, PYROCOCCUS FURIOSUS, KEYWDS 2 HYPERTHERMOPHILE, EXTREMOPHILE, ALDOSE-KETOSE ISOMERASE, GLUCONATE KEYWDS 3 6-PHOSPHATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.SWAN,J.T.G.SOLOMONS,C.C.BEESON,T.HANSEN,P.SCHONHEIT,C.DAVIES REVDAT 3 23-AUG-23 1QY4 1 REMARK LINK REVDAT 2 24-FEB-09 1QY4 1 VERSN REVDAT 1 09-DEC-03 1QY4 0 JRNL AUTH M.K.SWAN,J.T.G.SOLOMONS,C.C.BEESON,T.HANSEN,P.SCHONHEIT, JRNL AUTH 2 C.DAVIES JRNL TITL STRUCTURAL EVIDENCE FOR A HYDRIDE TRANSFER MECHANISM OF JRNL TITL 2 CATALYSIS IN PHOSPHOGLUCOSE ISOMERASE FROM PYROCOCCUS JRNL TITL 3 FURIOSUS JRNL REF J.BIOL.CHEM. V. 278 47261 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12970347 JRNL DOI 10.1074/JBC.M308603200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.K.SWAN,T.HANSEN,P.SCHONHEIT,C.DAVIES REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF PHOSPHOGLUCOSE ISOMERASE FROM PYROCOCCUS FURIOSUS REMARK 1 REF PROTEIN PEPT.LETT. V. 10 517 2003 REMARK 1 REFN ISSN 0929-8665 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 30880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2103 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3850 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.4410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3004 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -1.99000 REMARK 3 B12 (A**2) : -0.83000 REMARK 3 B13 (A**2) : -0.40000 REMARK 3 B23 (A**2) : 1.74000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.533 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3120 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4226 ; 1.723 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 5.013 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 555 ;19.326 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2390 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1467 ; 0.222 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 396 ; 0.176 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.182 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.279 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1852 ; 0.822 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2988 ; 1.438 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1268 ; 2.282 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1238 ; 3.592 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32924 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 36.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIMPLE REFINEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1QXJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000, 0.2M AMMONIUM ACETATE, REMARK 280 0.1 M SODIUM ACETATE PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 188 REMARK 465 LYS A 189 REMARK 465 LYS B 188 REMARK 465 LYS B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 170 OD1 ASP B 183 2.10 REMARK 500 O HOH A 378 O HOH B 377 2.15 REMARK 500 OG SER A 28 OD2 ASP A 48 2.16 REMARK 500 OE1 GLU A 18 O HOH A 327 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 48 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 LEU B 73 CB - CG - CD2 ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP B 143 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 70.26 45.90 REMARK 500 GLU B 47 -23.98 -162.15 REMARK 500 ASP B 48 58.40 33.19 REMARK 500 TYR B 133 -8.48 77.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN THE CARBOXYLATE OXYGENS OF GLUCONATE 6-PHOSPHATE ARE REMARK 600 LABELED O1 AND O1A IN THE PDB FILE WHEREAS IN THE PUBLISHED REMARK 600 PAPER DESCRIBING THIS STRUCTURE THESE ATOMS ARE REFERRED TO AS REMARK 600 O1A AND O1B, RESPECTIVELY. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 210 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 GLU A 97 OE2 138.8 REMARK 620 3 GLU A 97 OE1 162.4 56.5 REMARK 620 4 HIS A 136 NE2 90.2 96.9 77.7 REMARK 620 5 6PG A 300 O2 98.6 122.0 69.0 88.9 REMARK 620 6 6PG A 300 O1A 93.4 95.2 93.1 157.1 68.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 211 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 88 NE2 REMARK 620 2 HIS B 90 NE2 99.4 REMARK 620 3 GLU B 97 OE2 161.6 99.0 REMARK 620 4 GLU B 97 OE1 153.4 54.6 44.8 REMARK 620 5 HIS B 136 NE2 88.7 92.5 90.5 87.7 REMARK 620 6 6PG B 301 O1A 90.8 105.9 84.1 100.7 161.4 REMARK 620 7 6PG B 301 O2 94.7 165.5 67.0 111.7 91.3 70.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6PG A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6PG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 211 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QXJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NATIVE PHOSPHOGLUCOSE ISOMERASE FROM REMARK 900 PYROCOCCUS FURIOSUS REMARK 900 RELATED ID: 1QXR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE FROM PYROCOCCUS REMARK 900 FURIOSUS IN COMPLEX WITH 5-PHOSPHOARABINONATE DBREF 1QY4 A 1 189 UNP P83194 G6PI_PYRFU 1 189 DBREF 1QY4 B 1 189 UNP P83194 G6PI_PYRFU 1 189 SEQRES 1 A 189 MET TYR LYS GLU PRO PHE GLY VAL LYS VAL ASP PHE GLU SEQRES 2 A 189 THR GLY ILE ILE GLU GLY ALA LYS LYS SER VAL ARG ARG SEQRES 3 A 189 LEU SER ASP MET GLU GLY TYR PHE VAL ASP GLU ARG ALA SEQRES 4 A 189 TRP LYS GLU LEU VAL GLU LYS GLU ASP PRO VAL VAL TYR SEQRES 5 A 189 GLU VAL TYR ALA VAL GLU GLN GLU GLU LYS GLU GLY ASP SEQRES 6 A 189 LEU ASN PHE ALA THR THR VAL LEU TYR PRO GLY LYS VAL SEQRES 7 A 189 GLY LYS GLU PHE PHE PHE THR LYS GLY HIS PHE HIS ALA SEQRES 8 A 189 LYS LEU ASP ARG ALA GLU VAL TYR VAL ALA LEU LYS GLY SEQRES 9 A 189 LYS GLY GLY MET LEU LEU GLN THR PRO GLU GLY ASP ALA SEQRES 10 A 189 LYS TRP ILE SER MET GLU PRO GLY THR VAL VAL TYR VAL SEQRES 11 A 189 PRO PRO TYR TRP ALA HIS ARG THR VAL ASN ILE GLY ASP SEQRES 12 A 189 GLU PRO PHE ILE PHE LEU ALA ILE TYR PRO ALA ASP ALA SEQRES 13 A 189 GLY HIS ASP TYR GLY THR ILE ALA GLU LYS GLY PHE SER SEQRES 14 A 189 LYS ILE VAL ILE GLU GLU ASN GLY GLU VAL LYS VAL VAL SEQRES 15 A 189 ASP ASN PRO ARG TRP LYS LYS SEQRES 1 B 189 MET TYR LYS GLU PRO PHE GLY VAL LYS VAL ASP PHE GLU SEQRES 2 B 189 THR GLY ILE ILE GLU GLY ALA LYS LYS SER VAL ARG ARG SEQRES 3 B 189 LEU SER ASP MET GLU GLY TYR PHE VAL ASP GLU ARG ALA SEQRES 4 B 189 TRP LYS GLU LEU VAL GLU LYS GLU ASP PRO VAL VAL TYR SEQRES 5 B 189 GLU VAL TYR ALA VAL GLU GLN GLU GLU LYS GLU GLY ASP SEQRES 6 B 189 LEU ASN PHE ALA THR THR VAL LEU TYR PRO GLY LYS VAL SEQRES 7 B 189 GLY LYS GLU PHE PHE PHE THR LYS GLY HIS PHE HIS ALA SEQRES 8 B 189 LYS LEU ASP ARG ALA GLU VAL TYR VAL ALA LEU LYS GLY SEQRES 9 B 189 LYS GLY GLY MET LEU LEU GLN THR PRO GLU GLY ASP ALA SEQRES 10 B 189 LYS TRP ILE SER MET GLU PRO GLY THR VAL VAL TYR VAL SEQRES 11 B 189 PRO PRO TYR TRP ALA HIS ARG THR VAL ASN ILE GLY ASP SEQRES 12 B 189 GLU PRO PHE ILE PHE LEU ALA ILE TYR PRO ALA ASP ALA SEQRES 13 B 189 GLY HIS ASP TYR GLY THR ILE ALA GLU LYS GLY PHE SER SEQRES 14 B 189 LYS ILE VAL ILE GLU GLU ASN GLY GLU VAL LYS VAL VAL SEQRES 15 B 189 ASP ASN PRO ARG TRP LYS LYS HET 6PG A 300 17 HET NI A 210 1 HET 6PG B 301 17 HET NI B 211 1 HETNAM 6PG 6-PHOSPHOGLUCONIC ACID HETNAM NI NICKEL (II) ION FORMUL 3 6PG 2(C6 H13 O10 P) FORMUL 4 NI 2(NI 2+) FORMUL 7 HOH *202(H2 O) HELIX 1 1 SER A 28 GLU A 31 5 4 HELIX 2 2 ASP A 36 GLU A 47 1 12 HELIX 3 3 TYR A 160 GLY A 167 1 8 HELIX 4 4 SER B 28 GLU B 31 5 4 HELIX 5 5 ASP B 36 GLU B 47 1 12 HELIX 6 6 TYR B 160 GLY B 167 1 8 SHEET 1 A 7 PHE A 6 LYS A 9 0 SHEET 2 A 7 THR B 126 VAL B 130 -1 O VAL B 127 N VAL A 8 SHEET 3 A 7 GLU B 97 LYS B 103 -1 N GLU B 97 O VAL B 130 SHEET 4 A 7 PHE B 146 PRO B 153 -1 O ILE B 151 N VAL B 98 SHEET 5 A 7 LEU B 66 LEU B 73 -1 N ALA B 69 O ALA B 150 SHEET 6 A 7 VAL B 50 VAL B 57 -1 N VAL B 57 O PHE B 68 SHEET 7 A 7 LYS B 21 ARG B 26 -1 N ARG B 25 O VAL B 51 SHEET 1 B 7 LYS A 21 ARG A 26 0 SHEET 2 B 7 VAL A 50 VAL A 57 -1 O TYR A 52 N ARG A 25 SHEET 3 B 7 LEU A 66 LEU A 73 -1 O THR A 70 N TYR A 55 SHEET 4 B 7 PHE A 146 PRO A 153 -1 O ALA A 150 N ALA A 69 SHEET 5 B 7 GLU A 97 LYS A 103 -1 N VAL A 100 O LEU A 149 SHEET 6 B 7 THR A 126 VAL A 130 -1 O VAL A 130 N GLU A 97 SHEET 7 B 7 PHE B 6 LYS B 9 -1 O VAL B 8 N VAL A 127 SHEET 1 C 2 LYS A 77 VAL A 78 0 SHEET 2 C 2 GLU A 81 PHE A 82 -1 O GLU A 81 N VAL A 78 SHEET 1 D 3 ALA A 117 MET A 122 0 SHEET 2 D 3 GLY A 106 GLN A 111 -1 N LEU A 110 O LYS A 118 SHEET 3 D 3 ALA A 135 ASN A 140 -1 O ARG A 137 N LEU A 109 SHEET 1 E 2 LYS A 170 GLU A 175 0 SHEET 2 E 2 GLU A 178 ASP A 183 -1 O LYS A 180 N ILE A 173 SHEET 1 F 2 LYS B 77 VAL B 78 0 SHEET 2 F 2 GLU B 81 PHE B 82 -1 O GLU B 81 N VAL B 78 SHEET 1 G 3 ALA B 117 MET B 122 0 SHEET 2 G 3 GLY B 106 GLN B 111 -1 N MET B 108 O ILE B 120 SHEET 3 G 3 ALA B 135 ASN B 140 -1 O ARG B 137 N LEU B 109 SHEET 1 H 2 LYS B 170 GLU B 175 0 SHEET 2 H 2 GLU B 178 ASP B 183 -1 O VAL B 182 N ILE B 171 LINK NE2 HIS A 88 NI NI A 210 1555 1555 2.23 LINK OE2 GLU A 97 NI NI A 210 1555 1555 1.59 LINK OE1 GLU A 97 NI NI A 210 1555 1555 2.62 LINK NE2 HIS A 136 NI NI A 210 1555 1555 2.31 LINK NI NI A 210 O2 6PG A 300 1555 1555 2.42 LINK NI NI A 210 O1A 6PG A 300 1555 1555 2.24 LINK NE2 HIS B 88 NI NI B 211 1555 1555 2.16 LINK NE2 HIS B 90 NI NI B 211 1555 1555 2.77 LINK OE2 GLU B 97 NI NI B 211 1555 1555 2.92 LINK OE1 GLU B 97 NI NI B 211 1555 1555 1.41 LINK NE2 HIS B 136 NI NI B 211 1555 1555 2.23 LINK NI NI B 211 O1A 6PG B 301 1555 1555 2.14 LINK NI NI B 211 O2 6PG B 301 1555 1555 2.41 SITE 1 AC1 16 TYR A 52 THR A 71 THR A 85 GLY A 87 SITE 2 AC1 16 HIS A 88 GLU A 97 TYR A 99 HIS A 136 SITE 3 AC1 16 PHE A 148 TYR A 152 HIS A 158 TYR A 160 SITE 4 AC1 16 NI A 210 HOH A 302 HOH A 306 HOH A 337 SITE 1 AC2 17 TYR B 52 THR B 71 THR B 85 GLY B 87 SITE 2 AC2 17 HIS B 88 GLU B 97 TYR B 99 HIS B 136 SITE 3 AC2 17 PHE B 148 TYR B 152 HIS B 158 TYR B 160 SITE 4 AC2 17 NI B 211 HOH B 302 HOH B 305 HOH B 313 SITE 5 AC2 17 HOH B 314 SITE 1 AC3 5 HIS A 88 HIS A 90 GLU A 97 HIS A 136 SITE 2 AC3 5 6PG A 300 SITE 1 AC4 5 HIS B 88 HIS B 90 GLU B 97 HIS B 136 SITE 2 AC4 5 6PG B 301 CRYST1 36.000 39.700 74.700 73.70 78.50 72.60 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027797 -0.008693 -0.003708 0.00000 SCALE2 0.000000 0.026370 -0.006404 0.00000 SCALE3 0.000000 0.000000 0.014052 0.00000