PDB Short entry for 1QYK HEADER DNA 11-SEP-03 1QYK TITLE GCATGCT + BARIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*AP*TP*GP*CP*T)-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS QUADRUPLEX DNA, DNA EXPDTA X-RAY DIFFRACTION AUTHOR C.J.CARDIN,Y.GAN,J.H.THORPE,S.C.M.TEIXEIRA,B.C.GALE,M.I.A.MORAES REVDAT 3 12-FEB-14 1QYK 1 VERSN REVDAT 2 24-FEB-09 1QYK 1 VERSN REVDAT 1 21-OCT-03 1QYK 0 JRNL AUTH C.J.CARDIN,Y.GAN,J.H.THORPE,S.C.M.TEIXEIRA,B.C.GALE, JRNL AUTH 2 M.I.A.MORAES JRNL TITL METAL ION DISTRIBUTION AND STABILIZATION OF THE DNA JRNL TITL 2 QUADRUPLEX STRUCTURE FORMED BY D(GCATGCT) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.201 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.201 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 6.400 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 311 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.200 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 6.300 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 266 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 4248 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 280 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 316.50 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 2909 REMARK 3 NUMBER OF RESTRAINTS : 2843 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 ANGLE DISTANCES (A) : 0.030 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.001 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.000 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.000 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.004 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.031 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT REDUCED FREE R REMARK 3 (NO CUTOFF) REMARK 4 REMARK 4 1QYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB020226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8416 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NDB ENTRY UDG028 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, BARIUM CHLORIDE, REMARK 280 POTASSIUM CHLORIDE, MPD, PH 5.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.83350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.83350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 11.00750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.76800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 11.00750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.76800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.83350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 11.00750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.76800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 23.83350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 11.00750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 29.76800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 23.83350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 142 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 107 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 108 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 111 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 2 O4' DC B 2 C1' 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 2 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC A 2 C6 - N1 - C2 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC A 2 N1 - C2 - N3 ANGL. DEV. = -4.7 DEGREES REMARK 500 DC A 2 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC A 2 N1 - C2 - O2 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA A 3 O5' - C5' - C4' ANGL. DEV. = -5.6 DEGREES REMARK 500 DA A 3 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 DA A 3 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 DA A 3 C2 - N3 - C4 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT A 4 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DT A 4 C2 - N3 - C4 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT A 4 N3 - C4 - C5 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT A 4 C5 - C4 - O4 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG A 5 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT A 7 O4' - C4' - C3' ANGL. DEV. = 3.7 DEGREES REMARK 500 DT A 7 C2 - N3 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 DT A 7 C4 - C5 - C7 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT A 7 C6 - C5 - C7 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC B 2 O4' - C1' - C2' ANGL. DEV. = -5.4 DEGREES REMARK 500 DC B 2 C4 - C5 - C6 ANGL. DEV. = -3.3 DEGREES REMARK 500 DA B 3 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT B 4 C2 - N3 - C4 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT B 4 N3 - C4 - C5 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT B 4 C5 - C6 - N1 ANGL. DEV. = -3.6 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC B 6 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC B 6 N1 - C2 - O2 ANGL. DEV. = 6.1 DEGREES REMARK 500 DT B 7 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT B 7 C2 - N3 - C4 ANGL. DEV. = -4.9 DEGREES REMARK 500 DT B 7 N3 - C4 - C5 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 107 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH B 111 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH B 125 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH B 126 DISTANCE = 7.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 8 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 105 O REMARK 620 2 HOH A 106 O 75.3 REMARK 620 3 HOH A 122 O 55.5 128.4 REMARK 620 4 HOH A 117 O 143.6 130.7 90.2 REMARK 620 5 HOH A 121 O 90.7 154.8 49.7 72.1 REMARK 620 6 HOH A 132 O 79.6 70.8 110.4 129.0 86.3 REMARK 620 7 HOH A 120 O 115.5 119.2 97.2 77.0 48.5 55.1 REMARK 620 8 DT A 4 O4 123.4 60.8 134.6 70.3 142.1 113.7 116.4 REMARK 620 9 DT B 4 O2 139.1 82.7 145.2 75.7 95.5 60.6 49.0 70.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 8 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC B 2 OP1 REMARK 620 2 HOH B 130 O 103.6 REMARK 620 3 HOH B 131 O 144.5 75.5 REMARK 620 4 DG B 1 O3' 47.5 69.9 145.4 REMARK 620 5 DC B 6 OP1 121.2 82.2 94.1 83.9 REMARK 620 6 DG B 5 O3' 94.0 129.2 114.3 90.1 48.6 REMARK 620 7 DT A 4 O2 76.0 156.0 90.9 120.3 118.9 74.3 REMARK 620 8 DT B 4 O4 73.9 82.3 70.8 101.6 160.7 148.5 74.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA B 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QYL RELATED DB: PDB REMARK 900 GCATGCT + VANADIUM REMARK 900 RELATED ID: 1QZL RELATED DB: PDB REMARK 900 GCATGCT + COBALT REMARK 900 RELATED ID: 1R2O RELATED DB: PDB REMARK 900 GCATGCT + NI2+ DBREF 1QYK A 1 7 PDB 1QYK 1QYK 1 7 DBREF 1QYK B 1 7 PDB 1QYK 1QYK 1 7 SEQRES 1 A 7 DG DC DA DT DG DC DT SEQRES 1 B 7 DG DC DA DT DG DC DT HET BA A 8 1 HET BA B 8 1 HETNAM BA BARIUM ION FORMUL 3 BA 2(BA 2+) FORMUL 5 HOH *41(H2 O) LINK BA BA A 8 O HOH A 105 1555 1555 2.67 LINK BA BA A 8 O HOH A 106 1555 1555 2.76 LINK BA BA A 8 O HOH A 122 1555 1555 2.97 LINK BA BA A 8 O HOH A 117 1555 1555 2.88 LINK BA BA A 8 O HOH A 121 1555 1555 2.68 LINK BA BA A 8 O HOH A 132 1555 1555 3.32 LINK BA BA A 8 O HOH A 120 1555 1555 3.24 LINK BA BA B 8 OP1 DC B 2 1555 1555 2.96 LINK BA BA B 8 O HOH B 130 1555 1555 2.70 LINK BA BA B 8 O HOH B 131 1555 1555 2.45 LINK BA BA B 8 O3' DG B 1 1555 1555 3.30 LINK BA BA B 8 OP1 DC B 6 1555 1555 2.72 LINK BA BA B 8 O3' DG B 5 1555 1555 3.33 LINK BA BA A 8 O4 DT A 4 1555 8456 3.07 LINK BA BA A 8 O2 DT B 4 1555 6555 2.86 LINK BA BA B 8 O2 DT A 4 1555 6554 2.99 LINK BA BA B 8 O4 DT B 4 1555 8455 2.79 SITE 1 AC1 7 DT A 4 HOH A 105 HOH A 106 HOH A 117 SITE 2 AC1 7 HOH A 121 HOH A 122 DT B 4 SITE 1 AC2 8 DT A 4 DG B 1 DC B 2 DT B 4 SITE 2 AC2 8 DG B 5 DC B 6 HOH B 130 HOH B 131 CRYST1 22.015 59.536 47.667 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.045424 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020979 0.00000