PDB Short entry for 1QYR HEADER TRANSFERASE, TRANSLATION 11-SEP-03 1QYR TITLE 2.1 ANGSTROM CRYSTAL STRUCTURE OF KSGA: A UNIVERSALLY CONSERVED TITLE 2 ADENOSINE DIMETHYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH LEVEL KASUGAMYCIN RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KSGA; DIMETHYLADENOSINE TRANSFERASE; S-ADENOSYLMETHIONINE-6- COMPND 5 N',N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE; 16S RRNA DIMETHYLASE; COMPND 6 KASUGAMYCIN DIMETHYLTRANSFERASE; COMPND 7 EC: 2.1.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: KSGA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HMS174; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS KASUGAMYCIN RESISTANCE; ADENOSINE DIMETHYLTRANSFERASE; RRNA KEYWDS 2 MODIFICATION, TRANSFERASE, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR H.C.O'FARRELL,J.N.SCARSDALE,H.T.WRIGHT,J.P.RIFE REVDAT 5 14-FEB-24 1QYR 1 REMARK REVDAT 4 24-JUL-19 1QYR 1 REMARK REVDAT 3 13-JUL-11 1QYR 1 VERSN REVDAT 2 24-FEB-09 1QYR 1 VERSN REVDAT 1 29-JUN-04 1QYR 0 JRNL AUTH H.C.O'FARRELL,J.N.SCARSDALE,J.P.RIFE JRNL TITL CRYSTAL STRUCTURE OF KSGA, A UNIVERSALLY CONSERVED RRNA JRNL TITL 2 ADENINE DIMETHYLTRANSFERASE IN ESCHERICHIA COLI JRNL REF J.MOL.BIOL. V. 339 337 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15136037 JRNL DOI 10.1016/J.JMB.2004.02.068 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 28356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3159 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1829 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 42.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.21000 REMARK 3 B22 (A**2) : 1.94000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.157 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3960 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5395 ; 1.352 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 502 ; 5.310 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3024 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1826 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 244 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2532 ; 0.714 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4105 ; 1.315 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1428 ; 2.284 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1290 ; 3.666 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 45.5337 25.5625 20.5766 REMARK 3 T TENSOR REMARK 3 T11: 0.0659 T22: 0.0642 REMARK 3 T33: 0.0305 T12: -0.0041 REMARK 3 T13: -0.0371 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9481 L22: 0.3725 REMARK 3 L33: 1.7122 L12: 0.0590 REMARK 3 L13: -0.0395 L23: -0.3619 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: -0.0576 S13: 0.0560 REMARK 3 S21: 0.0469 S22: -0.0706 S23: -0.0458 REMARK 3 S31: -0.0805 S32: -0.0012 S33: 0.0950 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 62.9155 33.2071 -5.1564 REMARK 3 T TENSOR REMARK 3 T11: 0.0487 T22: 0.1158 REMARK 3 T33: 0.0471 T12: -0.0091 REMARK 3 T13: 0.0000 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 2.9461 L22: 0.7200 REMARK 3 L33: 2.5606 L12: -0.1050 REMARK 3 L13: -1.3134 L23: -0.7213 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -0.2106 S13: 0.0303 REMARK 3 S21: -0.0451 S22: -0.1480 S23: -0.1833 REMARK 3 S31: -0.1259 S32: 0.3795 S33: 0.1376 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): 103.9478 41.8075 -39.1212 REMARK 3 T TENSOR REMARK 3 T11: 0.0564 T22: 0.0013 REMARK 3 T33: 0.0869 T12: 0.0085 REMARK 3 T13: -0.0117 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.6231 L22: 0.5101 REMARK 3 L33: 0.8494 L12: 0.4465 REMARK 3 L13: -0.7527 L23: 0.1813 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: -0.0773 S13: -0.1042 REMARK 3 S21: 0.0305 S22: -0.0108 S23: -0.0364 REMARK 3 S31: -0.0120 S32: 0.0403 S33: 0.0833 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 203 B 268 REMARK 3 ORIGIN FOR THE GROUP (A): 82.4455 29.4999 -19.4404 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.0988 REMARK 3 T33: 0.1392 T12: 0.0566 REMARK 3 T13: 0.0893 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 6.3308 L22: 1.3317 REMARK 3 L33: 4.7289 L12: 1.1531 REMARK 3 L13: -3.3829 L23: -1.6333 REMARK 3 S TENSOR REMARK 3 S11: -0.4713 S12: -0.5610 S13: -0.7072 REMARK 3 S21: 0.1665 S22: 0.0644 S23: -0.1994 REMARK 3 S31: 0.2481 S32: 0.4179 S33: 0.4069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED ALSO BY CNS 1. THE SAME TEST REMARK 3 SET WAS USED IN BOTH CNS AND REFMAC REMARK 4 REMARK 4 1QYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC CONFOCAL OPTICS REMARK 200 OPTICS : OSMIC CONFOCAL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32474 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, 0.2M CALCIUM ACETATE, 50MM REMARK 280 TRIS, PH 7.4, 50 MM NH4CL, 6MM B-MERCAPTOETHANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.95600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.21400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.95600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.21400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS ONE MONOMER. REMARK 300 THE ASSYMETRIC UNIT CONTAINS TWO MONOMERS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 TYR A 116 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 TYR B 116 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 117 CG OD1 ND2 REMARK 470 GLN B 220 CG CD OE1 NE2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 223 CG CD CE NZ REMARK 470 ARG B 226 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 231 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 221 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 91 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 130 -105.61 33.84 REMARK 500 THR B 130 -113.38 33.47 REMARK 500 ASN B 267 -115.01 -118.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 1QYR A 17 268 UNP P06992 KSGA_ECOLI 17 268 DBREF 1QYR B 17 268 UNP P06992 KSGA_ECOLI 17 268 SEQRES 1 A 252 GLN ASN PHE LEU ASN ASP GLN PHE VAL ILE ASP SER ILE SEQRES 2 A 252 VAL SER ALA ILE ASN PRO GLN LYS GLY GLN ALA MET VAL SEQRES 3 A 252 GLU ILE GLY PRO GLY LEU ALA ALA LEU THR GLU PRO VAL SEQRES 4 A 252 GLY GLU ARG LEU ASP GLN LEU THR VAL ILE GLU LEU ASP SEQRES 5 A 252 ARG ASP LEU ALA ALA ARG LEU GLN THR HIS PRO PHE LEU SEQRES 6 A 252 GLY PRO LYS LEU THR ILE TYR GLN GLN ASP ALA MET THR SEQRES 7 A 252 PHE ASN PHE GLY GLU LEU ALA GLU LYS MET GLY GLN PRO SEQRES 8 A 252 LEU ARG VAL PHE GLY ASN LEU PRO TYR ASN ILE SER THR SEQRES 9 A 252 PRO LEU MET PHE HIS LEU PHE SER TYR THR ASP ALA ILE SEQRES 10 A 252 ALA ASP MET HIS PHE MET LEU GLN LYS GLU VAL VAL ASN SEQRES 11 A 252 ARG LEU VAL ALA GLY PRO ASN SER LYS ALA TYR GLY ARG SEQRES 12 A 252 LEU SER VAL MET ALA GLN TYR TYR CYS ASN VAL ILE PRO SEQRES 13 A 252 VAL LEU GLU VAL PRO PRO SER ALA PHE THR PRO PRO PRO SEQRES 14 A 252 LYS VAL ASP SER ALA VAL VAL ARG LEU VAL PRO HIS ALA SEQRES 15 A 252 THR MET PRO HIS PRO VAL LYS ASP VAL ARG VAL LEU SER SEQRES 16 A 252 ARG ILE THR THR GLU ALA PHE ASN GLN ARG ARG LYS THR SEQRES 17 A 252 ILE ARG ASN SER LEU GLY ASN LEU PHE SER VAL GLU VAL SEQRES 18 A 252 LEU THR GLY MET GLY ILE ASP PRO ALA MET ARG ALA GLU SEQRES 19 A 252 ASN ILE SER VAL ALA GLN TYR CYS GLN MET ALA ASN TYR SEQRES 20 A 252 LEU ALA GLU ASN ALA SEQRES 1 B 252 GLN ASN PHE LEU ASN ASP GLN PHE VAL ILE ASP SER ILE SEQRES 2 B 252 VAL SER ALA ILE ASN PRO GLN LYS GLY GLN ALA MET VAL SEQRES 3 B 252 GLU ILE GLY PRO GLY LEU ALA ALA LEU THR GLU PRO VAL SEQRES 4 B 252 GLY GLU ARG LEU ASP GLN LEU THR VAL ILE GLU LEU ASP SEQRES 5 B 252 ARG ASP LEU ALA ALA ARG LEU GLN THR HIS PRO PHE LEU SEQRES 6 B 252 GLY PRO LYS LEU THR ILE TYR GLN GLN ASP ALA MET THR SEQRES 7 B 252 PHE ASN PHE GLY GLU LEU ALA GLU LYS MET GLY GLN PRO SEQRES 8 B 252 LEU ARG VAL PHE GLY ASN LEU PRO TYR ASN ILE SER THR SEQRES 9 B 252 PRO LEU MET PHE HIS LEU PHE SER TYR THR ASP ALA ILE SEQRES 10 B 252 ALA ASP MET HIS PHE MET LEU GLN LYS GLU VAL VAL ASN SEQRES 11 B 252 ARG LEU VAL ALA GLY PRO ASN SER LYS ALA TYR GLY ARG SEQRES 12 B 252 LEU SER VAL MET ALA GLN TYR TYR CYS ASN VAL ILE PRO SEQRES 13 B 252 VAL LEU GLU VAL PRO PRO SER ALA PHE THR PRO PRO PRO SEQRES 14 B 252 LYS VAL ASP SER ALA VAL VAL ARG LEU VAL PRO HIS ALA SEQRES 15 B 252 THR MET PRO HIS PRO VAL LYS ASP VAL ARG VAL LEU SER SEQRES 16 B 252 ARG ILE THR THR GLU ALA PHE ASN GLN ARG ARG LYS THR SEQRES 17 B 252 ILE ARG ASN SER LEU GLY ASN LEU PHE SER VAL GLU VAL SEQRES 18 B 252 LEU THR GLY MET GLY ILE ASP PRO ALA MET ARG ALA GLU SEQRES 19 B 252 ASN ILE SER VAL ALA GLN TYR CYS GLN MET ALA ASN TYR SEQRES 20 B 252 LEU ALA GLU ASN ALA FORMUL 3 HOH *236(H2 O) HELIX 1 1 ASP A 22 ASN A 34 1 13 HELIX 2 2 LEU A 51 GLU A 57 1 7 HELIX 3 3 ASP A 68 THR A 77 1 10 HELIX 4 4 LEU A 81 PRO A 83 5 3 HELIX 5 5 ASP A 91 PHE A 95 5 5 HELIX 6 6 ASN A 96 GLY A 105 1 10 HELIX 7 7 ILE A 118 SER A 128 1 11 HELIX 8 8 TYR A 129 ASP A 131 5 3 HELIX 9 9 LYS A 142 ALA A 150 1 9 HELIX 10 10 GLY A 158 TYR A 167 1 10 HELIX 11 11 PRO A 177 SER A 179 5 3 HELIX 12 12 ASP A 206 GLN A 220 1 15 HELIX 13 13 THR A 224 LEU A 229 1 6 HELIX 14 14 SER A 234 MET A 241 1 8 HELIX 15 15 ARG A 248 ILE A 252 5 5 HELIX 16 16 SER A 253 ALA A 268 1 16 HELIX 17 17 ASP B 22 ASN B 34 1 13 HELIX 18 18 LEU B 51 GLU B 57 1 7 HELIX 19 19 ASP B 68 THR B 77 1 10 HELIX 20 20 LEU B 81 PRO B 83 5 3 HELIX 21 21 ASN B 96 GLY B 105 1 10 HELIX 22 22 ILE B 118 TYR B 129 1 12 HELIX 23 23 LYS B 142 ALA B 150 1 9 HELIX 24 24 GLY B 158 TYR B 167 1 10 HELIX 25 25 PRO B 177 SER B 179 5 3 HELIX 26 26 ASP B 206 GLN B 220 1 15 HELIX 27 27 THR B 224 LEU B 229 1 6 HELIX 28 28 SER B 234 MET B 241 1 8 HELIX 29 29 ARG B 248 ILE B 252 5 5 HELIX 30 30 SER B 253 ASN B 267 1 15 SHEET 1 A 2 PHE A 19 LEU A 20 0 SHEET 2 A 2 PHE A 181 THR A 182 -1 O THR A 182 N PHE A 19 SHEET 1 B 7 LEU A 85 TYR A 88 0 SHEET 2 B 7 LEU A 62 ILE A 65 1 N VAL A 64 O TYR A 88 SHEET 3 B 7 MET A 41 ILE A 44 1 N GLU A 43 O ILE A 65 SHEET 4 B 7 LEU A 108 ASN A 113 1 O PHE A 111 N VAL A 42 SHEET 5 B 7 ILE A 133 GLN A 141 1 O ASP A 135 N VAL A 110 SHEET 6 B 7 SER A 189 PRO A 196 -1 O ALA A 190 N LEU A 140 SHEET 7 B 7 CYS A 168 VAL A 176 -1 N VAL A 176 O SER A 189 SHEET 1 C 2 PHE B 19 LEU B 20 0 SHEET 2 C 2 PHE B 181 THR B 182 -1 O THR B 182 N PHE B 19 SHEET 1 D 7 LEU B 85 TYR B 88 0 SHEET 2 D 7 LEU B 62 ILE B 65 1 N VAL B 64 O TYR B 88 SHEET 3 D 7 ALA B 40 ILE B 44 1 N GLU B 43 O ILE B 65 SHEET 4 D 7 LEU B 108 ASN B 113 1 O PHE B 111 N ILE B 44 SHEET 5 D 7 ILE B 133 GLN B 141 1 O ASP B 135 N VAL B 110 SHEET 6 D 7 SER B 189 PRO B 196 -1 O LEU B 194 N MET B 136 SHEET 7 D 7 CYS B 168 VAL B 176 -1 N ILE B 171 O ARG B 193 CISPEP 1 THR A 182 PRO A 183 0 -7.41 CISPEP 2 THR B 182 PRO B 183 0 -7.65 CRYST1 173.912 38.428 82.982 90.00 90.01 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005750 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012051 0.00000