PDB Short entry for 1R00 HEADER OXIDOREDUCTASE, TRANSFERASE 19-SEP-03 1R00 TITLE CRYSTAL STRUCTURE OF ACLACINOMYCIN-10-HYDROXYLASE (RDMB) IN COMPLEX TITLE 2 WITH S-ADENOSYL-L-HOMOCYSTEINE (SAH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACLACINOMYCIN-10-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RDMB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES PURPURASCENS; SOURCE 3 ORGANISM_TAXID: 1924; SOURCE 4 GENE: RDMB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL2-BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX 4T-3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRDM16 KEYWDS ANTHRACYCLINE, HYDROXYLASE, METHYLTRANSFERASE, POLYKETIDE, KEYWDS 2 STREPTOMYCES, TAILORING ENZYME, OXIDOREDUCTASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.JANSSON,J.NIEMI,Y.LINDQVIST,P.MANTSALA,G.SCHNEIDER REVDAT 5 23-AUG-23 1R00 1 REMARK REVDAT 4 28-FEB-18 1R00 1 TITLE REMARK REVDAT 3 13-JUL-11 1R00 1 VERSN REVDAT 2 24-FEB-09 1R00 1 VERSN REVDAT 1 25-NOV-03 1R00 0 JRNL AUTH A.JANSSON,J.NIEMI,Y.LINDQVIST,P.MANTSALA,G.SCHNEIDER JRNL TITL CRYSTAL STRUCTURE OF ACLACINOMYCIN-10-HYDROXYLASE, A JRNL TITL 2 S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE HOMOLOG JRNL TITL 3 INVOLVED IN ANTHRACYCLINE BIOSYNTHESIS IN STREPTOMYCES JRNL TITL 4 PURPURASCENS. JRNL REF J.MOL.BIOL. V. 334 269 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 14607118 JRNL DOI 10.1016/J.JMB.2003.09.061 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.JANSSON,J.NIEMI,P.MANTSALA,G.SCHNEIDER REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 ACLACINOMYCIN-10-METHYLESTERASE AND REMARK 1 TITL 3 ACLACINOMYCIN-10-HYDROXYLASE FROM STREPTOMYCES PURPURASCENS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 1637 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444903014100 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 12560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 7680 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.011 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.395 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RIDING HYDROGENS; THE OCCUPANCY IS PUT TO ZERO ON THE SIDECHAINS REMARK 3 OF GLN15, ASP57, LYS84, GLU219, ARG298, REMARK 3 ARG319 REMARK 4 REMARK 4 1R00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.076 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12651 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FFT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: PDB ENTRY 1QZZ, SAM-COMPLEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, AMMONIUM ACETATE, SODIUM REMARK 280 ACETATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.66500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.66500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.56000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.06500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.56000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.06500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.66500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.56000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.06500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.66500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.56000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.06500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.66500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 PRO A 9 REMARK 465 GLN A 85 REMARK 465 ALA A 289 REMARK 465 ASP A 290 REMARK 465 VAL A 291 REMARK 465 GLU A 292 REMARK 465 GLY A 293 REMARK 465 ASP A 294 REMARK 465 GLY A 295 REMARK 465 GLU A 358 REMARK 465 GLU A 359 REMARK 465 ALA A 360 REMARK 465 ALA A 361 REMARK 465 PRO A 362 REMARK 465 ALA A 363 REMARK 465 ALA A 364 REMARK 465 GLN A 365 REMARK 465 ALA A 366 REMARK 465 SER A 367 REMARK 465 GLU A 368 REMARK 465 ALA A 369 REMARK 465 LEU A 370 REMARK 465 PRO A 371 REMARK 465 ALA A 372 REMARK 465 GLN A 373 REMARK 465 GLU A 374 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 15 CB CG CD OE1 NE2 REMARK 480 ASP A 57 CB CG OD1 OD2 REMARK 480 LYS A 84 CB CG CD CE NZ REMARK 480 GLU A 219 CD OE1 OE2 REMARK 480 ARG A 298 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG A 319 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 319 OE1 GLU A 336 4566 1.05 REMARK 500 NH1 ARG A 319 CD GLU A 336 4566 2.15 REMARK 500 CZ ARG A 319 OE1 GLU A 336 4566 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 157 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 263 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 297 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 298 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 319 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 -82.34 -116.68 REMARK 500 ASP A 50 14.94 -149.63 REMARK 500 ARG A 337 106.60 -167.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 635 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QZZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACLACINOMYCIN-10-HYDROXYLASE (RDMB) IN COMPLEX REMARK 900 WITH S-ADENSYL-L-METHIONINE (SAM) DBREF 1R00 A 1 374 UNP Q54527 Q54527_9ACTO 1 374 SEQRES 1 A 374 MET SER SER SER SER PRO GLY GLU PRO LEU GLU PRO THR SEQRES 2 A 374 ASP GLN ASP LEU ASP VAL LEU LEU LYS ASN LEU GLY ASN SEQRES 3 A 374 LEU VAL THR PRO MET ALA LEU ARG VAL ALA ALA THR LEU SEQRES 4 A 374 ARG LEU VAL ASP HIS LEU LEU ALA GLY ALA ASP THR LEU SEQRES 5 A 374 ALA GLY LEU ALA ASP ARG THR ASP THR HIS PRO GLN ALA SEQRES 6 A 374 LEU SER ARG LEU VAL ARG HIS LEU THR VAL VAL GLY VAL SEQRES 7 A 374 LEU GLU GLY GLY GLU LYS GLN GLY ARG PRO LEU ARG PRO SEQRES 8 A 374 THR ARG LEU GLY MET LEU LEU ALA ASP GLY HIS PRO ALA SEQRES 9 A 374 GLN GLN ARG ALA TRP LEU ASP LEU ASN GLY ALA VAL SER SEQRES 10 A 374 HIS ALA ASP LEU ALA PHE THR GLY LEU LEU ASP VAL VAL SEQRES 11 A 374 ARG THR GLY ARG PRO ALA TYR ALA GLY ARG TYR GLY ARG SEQRES 12 A 374 PRO PHE TRP GLU ASP LEU SER ALA ASP VAL ALA LEU ALA SEQRES 13 A 374 ASP SER PHE ASP ALA LEU MET SER CYS ASP GLU ASP LEU SEQRES 14 A 374 ALA TYR GLU ALA PRO ALA ASP ALA TYR ASP TRP SER ALA SEQRES 15 A 374 VAL ARG HIS VAL LEU ASP VAL GLY GLY GLY ASN GLY GLY SEQRES 16 A 374 MET LEU ALA ALA ILE ALA LEU ARG ALA PRO HIS LEU ARG SEQRES 17 A 374 GLY THR LEU VAL GLU LEU ALA GLY PRO ALA GLU ARG ALA SEQRES 18 A 374 ARG ARG ARG PHE ALA ASP ALA GLY LEU ALA ASP ARG VAL SEQRES 19 A 374 THR VAL ALA GLU GLY ASP PHE PHE LYS PRO LEU PRO VAL SEQRES 20 A 374 THR ALA ASP VAL VAL LEU LEU SER PHE VAL LEU LEU ASN SEQRES 21 A 374 TRP SER ASP GLU ASP ALA LEU THR ILE LEU ARG GLY CYS SEQRES 22 A 374 VAL ARG ALA LEU GLU PRO GLY GLY ARG LEU LEU VAL LEU SEQRES 23 A 374 ASP ARG ALA ASP VAL GLU GLY ASP GLY ALA ASP ARG PHE SEQRES 24 A 374 PHE SER THR LEU LEU ASP LEU ARG MET LEU THR PHE MET SEQRES 25 A 374 GLY GLY ARG VAL ARG THR ARG ASP GLU VAL VAL ASP LEU SEQRES 26 A 374 ALA GLY SER ALA GLY LEU ALA LEU ALA SER GLU ARG THR SEQRES 27 A 374 SER GLY SER THR THR LEU PRO PHE ASP PHE SER ILE LEU SEQRES 28 A 374 GLU PHE THR ALA VAL SER GLU GLU ALA ALA PRO ALA ALA SEQRES 29 A 374 GLN ALA SER GLU ALA LEU PRO ALA GLN GLU HET ACT A 421 4 HET SAH A 635 26 HETNAM ACT ACETATE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 HOH *91(H2 O) HELIX 1 1 THR A 13 ASN A 23 1 11 HELIX 2 2 LEU A 27 ARG A 40 1 14 HELIX 3 3 ARG A 40 ALA A 47 1 8 HELIX 4 4 THR A 51 ASP A 60 1 10 HELIX 5 5 HIS A 62 VAL A 76 1 15 HELIX 6 6 ARG A 93 ALA A 99 5 7 HELIX 7 7 GLN A 105 ASP A 111 1 7 HELIX 8 8 GLY A 114 LEU A 121 1 8 HELIX 9 9 ALA A 122 THR A 124 5 3 HELIX 10 10 GLY A 125 GLY A 133 1 9 HELIX 11 11 ALA A 136 GLY A 142 1 7 HELIX 12 12 PRO A 144 ASP A 152 1 9 HELIX 13 13 ASP A 152 MET A 163 1 12 HELIX 14 14 SER A 164 GLU A 167 5 4 HELIX 15 15 TYR A 171 ALA A 177 1 7 HELIX 16 16 GLY A 194 ALA A 204 1 11 HELIX 17 17 LEU A 214 ALA A 228 1 15 HELIX 18 18 VAL A 257 TRP A 261 5 5 HELIX 19 19 SER A 262 ALA A 276 1 15 HELIX 20 20 ALA A 296 MET A 312 1 17 HELIX 21 21 THR A 318 ALA A 329 1 12 SHEET 1 A 2 LEU A 79 GLU A 80 0 SHEET 2 A 2 ARG A 90 PRO A 91 -1 O ARG A 90 N GLU A 80 SHEET 1 B 7 VAL A 234 GLU A 238 0 SHEET 2 B 7 ARG A 208 GLU A 213 1 N LEU A 211 O ALA A 237 SHEET 3 B 7 HIS A 185 VAL A 189 1 N ASP A 188 O THR A 210 SHEET 4 B 7 ALA A 249 SER A 255 1 O LEU A 253 N LEU A 187 SHEET 5 B 7 LEU A 277 ASP A 287 1 O LEU A 284 N VAL A 252 SHEET 6 B 7 PHE A 348 ALA A 355 -1 O LEU A 351 N VAL A 285 SHEET 7 B 7 LEU A 331 SER A 339 -1 N SER A 335 O GLU A 352 SITE 1 AC1 9 TYR A 171 ASP A 188 GLY A 191 GLY A 194 SITE 2 AC1 9 GLY A 195 MET A 196 LEU A 197 SER A 255 SITE 3 AC1 9 SAH A 635 SITE 1 AC2 18 TRP A 146 TYR A 171 GLY A 190 GLY A 191 SITE 2 AC2 18 GLY A 192 GLU A 213 LEU A 214 PRO A 217 SITE 3 AC2 18 GLY A 239 ASP A 240 PHE A 241 PHE A 242 SITE 4 AC2 18 SER A 255 ASN A 260 TRP A 261 ACT A 421 SITE 5 AC2 18 HOH A 647 HOH A 712 CRYST1 63.120 92.130 115.330 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015843 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008671 0.00000